Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.36937 * 119.99946 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00249 * 179.97438 * 8 7 6 11 11 N 1.31615 * 120.00063 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99753 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47492 * 90.00038 * 12 10 8 14 14 H 1.48500 * 109.46982 * 209.99770 * 12 10 8 15 15 H 1.48507 * 109.47317 * 329.99642 * 12 10 8 16 16 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 17 17 C 1.34778 * 120.00226 * 85.00029 * 16 2 1 18 18 O 1.21281 * 119.99825 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99836 * 179.97438 * 17 16 2 20 20 O 1.42899 * 109.46887 * 179.97438 * 19 17 16 21 21 C 1.35895 * 117.00128 * 179.97438 * 20 19 17 22 22 C 1.38763 * 120.04940 * 359.72592 * 21 20 19 23 23 C 1.38130 * 119.97075 * 179.74495 * 22 21 20 24 24 C 1.38266 * 120.06957 * 0.55183 * 23 22 21 25 25 C 1.38364 * 120.09730 * 359.69907 * 24 23 22 26 26 Cl 1.73596 * 119.98574 * 180.02562 * 25 24 23 27 27 C 1.38286 * 120.03063 * 0.02562 * 25 24 23 28 28 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 30 30 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 31 31 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 32 32 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 33 33 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 34 34 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 35 35 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 36 36 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 37 37 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 38 38 H 0.96993 * 119.99944 * 180.02562 * 11 10 8 39 39 H 0.97003 * 119.99788 * 264.99268 * 16 2 1 40 40 H 1.09000 * 109.47305 * 299.99746 * 19 17 16 41 41 H 1.08993 * 109.47118 * 59.99813 * 19 17 16 42 42 H 1.08004 * 120.01384 * 0.02562 * 22 21 20 43 43 H 1.08006 * 119.96305 * 180.25139 * 23 22 21 44 44 H 1.08000 * 119.95222 * 179.72638 * 24 23 22 45 45 H 1.07992 * 120.03619 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 7 5.5348 -1.2308 2.6249 8 6 6.2186 -1.8056 3.6627 9 1 5.6817 -2.3361 4.4353 10 6 7.6021 -1.7076 3.7212 11 7 8.2593 -2.2597 4.7190 12 14 8.5308 -0.7909 2.3847 13 1 8.6618 0.6388 2.7644 14 1 9.8817 -1.3860 2.2235 15 1 7.7872 -0.8967 1.1036 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8583 1.1583 -2.4117 19 6 2.6501 -0.7287 -3.5873 20 8 2.6975 0.1892 -4.6814 21 6 3.1329 -0.2946 -5.8743 22 6 3.5123 -1.6246 -5.9880 23 6 3.9496 -2.1160 -7.2026 24 6 4.0206 -1.2814 -8.3026 25 6 3.6480 0.0465 -8.1913 26 17 3.7376 1.0917 -9.5744 27 6 3.2042 0.5414 -6.9787 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.7516 -1.7713 1.2058 32 1 1.6053 -0.2615 2.1370 33 1 3.8530 0.4372 1.3574 34 1 3.9994 -1.0727 0.4262 35 1 3.6401 -0.8755 3.4507 36 1 3.7865 -2.3850 2.5188 37 1 6.0171 -0.7554 1.9305 38 1 9.2259 -2.1909 4.7601 39 1 2.2492 -1.6318 -1.1524 40 1 3.6494 -1.1205 -3.3977 41 1 1.9780 -1.5510 -3.8323 42 1 3.4613 -2.2763 -5.1282 43 1 4.2410 -3.1522 -7.2919 44 1 4.3670 -1.6665 -9.2503 45 1 2.9129 1.5777 -6.8918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330977070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -75.129165 kcal Electronic energy + Delta-G solvation = -25812.455257 eV Core-core repulsion = 21855.278129 eV Total energy + Delta-G solvation = -3957.177128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56045 -40.62130 -38.74119 -37.94175 -37.26837 -36.60466 -34.26882 -33.05751 -32.11059 -31.39025 -30.94243 -28.95239 -27.36036 -24.55089 -23.95052 -23.50274 -22.54973 -22.00526 -21.55275 -19.62446 -19.58277 -18.34872 -17.61520 -17.42571 -17.00294 -16.78745 -16.56206 -15.99331 -15.88627 -15.73714 -15.62355 -15.04995 -14.94061 -14.65456 -14.57803 -14.32058 -13.98734 -13.86604 -13.57200 -13.49664 -13.09724 -12.85187 -12.84396 -12.80495 -12.49419 -12.32246 -12.10407 -12.02823 -11.96098 -11.91759 -11.87343 -11.74420 -11.53961 -10.97883 -10.94660 -10.15399 -9.93060 -9.35940 -9.29776 -8.04014 -5.37285 0.05691 0.27202 0.95316 1.36429 1.40322 1.47417 1.48363 1.57748 2.47068 2.57137 2.63781 3.27536 3.47426 3.56842 3.76271 3.88821 3.95231 4.05082 4.06989 4.09892 4.11660 4.18786 4.22718 4.38960 4.40170 4.56111 4.65037 4.74953 4.82333 4.86689 4.90919 5.00509 5.08551 5.13085 5.21810 5.30539 5.31261 5.34844 5.43534 5.48522 5.55522 5.75194 6.19023 6.20695 6.50171 7.07384 7.16771 7.84881 8.02468 9.17463 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.002087 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.367143 B =13412.478639 C =15403.377752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.057 0.943 10 C -0.067 4.067 11 N -0.983 5.983 12 Si 0.956 3.044 13 H -0.282 1.282 14 H -0.294 1.294 15 H -0.250 1.250 16 N -0.704 5.704 17 C 0.512 3.488 18 O -0.573 6.573 19 C 0.038 3.962 20 O -0.317 6.317 21 C 0.127 3.873 22 C -0.203 4.203 23 C -0.061 4.061 24 C -0.151 4.151 25 C -0.007 4.007 26 Cl -0.066 7.066 27 C -0.165 4.165 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.031 0.969 37 H 0.365 0.635 38 H 0.258 0.742 39 H 0.419 0.581 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.164 0.836 43 H 0.169 0.831 44 H 0.153 0.847 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.554 -1.170 -28.323 32.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.025 3.975 7 N -0.408 5.408 8 C -0.367 4.367 9 H 0.075 0.925 10 C -0.258 4.258 11 N -0.634 5.634 12 Si 0.784 3.216 13 H -0.209 1.209 14 H -0.221 1.221 15 H -0.174 1.174 16 N -0.359 5.359 17 C 0.298 3.702 18 O -0.452 6.452 19 C -0.040 4.040 20 O -0.230 6.230 21 C 0.082 3.918 22 C -0.222 4.222 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.034 4.034 26 Cl -0.037 7.037 27 C -0.185 4.185 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.171 0.829 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.828 -0.160 -28.223 32.859 hybrid contribution 1.123 0.374 -0.239 1.208 sum -15.705 0.213 -28.462 32.508 Atomic orbital electron populations 1.22112 0.93944 1.03200 1.02220 1.20975 0.94691 0.96613 0.83614 0.91718 1.21754 0.93645 1.02512 0.96948 1.21677 0.96615 1.00075 0.97293 1.20864 0.81979 0.98016 0.96636 1.42795 1.03845 1.66670 1.27515 1.19076 0.90178 1.26332 1.01128 0.92477 1.25547 0.97367 1.02264 1.00633 1.69882 1.07512 1.51584 1.34427 0.85389 0.77888 0.78174 0.80184 1.20860 1.22075 1.17431 1.45857 1.66616 1.14921 1.08473 1.20502 0.77534 0.86929 0.85204 1.90743 1.50999 1.17961 1.85451 1.22758 1.05352 0.92265 0.83636 1.86115 1.81136 1.38984 1.16730 1.18959 0.95033 0.93048 0.84800 1.21749 1.05157 0.93910 1.01349 1.21341 0.94893 1.01165 0.90499 1.21316 1.03030 0.91111 1.01556 1.20703 1.02168 0.92455 0.88037 1.98381 1.96807 1.66977 1.41550 1.20284 1.06652 1.01047 0.90482 0.90534 0.90491 0.93994 0.88910 0.89250 0.92959 0.91301 0.96037 0.95053 0.80260 0.93321 0.74364 0.86116 0.85167 0.81894 0.81325 0.82925 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.54 2.57 44.99 0.12 2.65 16 3 H 0.06 1.51 7.58 -2.38 -0.02 1.49 16 4 C -0.11 -1.86 4.75 30.59 0.15 -1.71 16 5 C -0.12 -2.94 5.22 30.60 0.16 -2.78 16 6 C 0.15 5.23 6.26 86.38 0.54 5.78 16 7 N -0.76 -34.90 5.41 -343.44 -1.86 -36.75 16 8 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 9 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 10 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 11 N -0.98 -62.94 13.97 21.65 0.30 -62.64 16 12 Si 0.96 45.32 27.74 68.60 1.90 47.22 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 16 N -0.70 -10.49 4.53 -442.54 -2.00 -12.49 16 17 C 0.51 10.38 7.87 87.66 0.69 11.07 16 18 O -0.57 -17.89 16.16 16.00 0.26 -17.63 16 19 C 0.04 0.50 5.22 71.24 0.37 0.87 16 20 O -0.32 -6.73 9.67 -73.33 -0.71 -7.44 16 21 C 0.13 2.27 6.69 22.50 0.15 2.42 16 22 C -0.20 -2.30 9.04 22.37 0.20 -2.10 16 23 C -0.06 -0.57 10.04 22.25 0.22 -0.34 16 24 C -0.15 -1.82 9.83 22.31 0.22 -1.60 16 25 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 26 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 27 C -0.17 -3.17 9.77 22.39 0.22 -2.95 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.60 7.75 -2.39 -0.02 1.58 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.36 15.96 5.53 -92.71 -0.51 15.44 16 38 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.42 3.49 8.60 -92.71 -0.80 2.69 16 40 H 0.12 1.03 7.65 -2.39 -0.02 1.01 16 41 H 0.13 0.77 7.67 -2.39 -0.02 0.75 16 42 H 0.16 0.84 6.30 -2.91 -0.02 0.82 16 43 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 44 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -80.58 392.95 2.66 -77.92 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.36 Total: 19.28 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.21 Total: -6.33 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.56 Total: -111.88 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.45 Total: -25.07 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -80.58 2.66 -77.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330977070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.791 kcal (2) G-P(sol) polarization free energy of solvation -80.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds