Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47351 * 2 1 4 4 C 1.50694 * 109.47323 * 119.99868 * 2 1 3 5 5 O 1.21289 * 120.00031 * 109.99824 * 4 2 1 6 6 N 1.34781 * 120.00485 * 290.00143 * 4 2 1 7 7 C 1.46495 * 120.00422 * 186.00227 * 6 4 2 8 8 C 1.46500 * 119.99432 * 5.99848 * 6 4 2 9 9 C 1.52999 * 109.46993 * 96.19537 * 8 6 4 10 10 H 1.09005 * 109.47015 * 302.53319 * 9 8 6 11 11 O 1.42901 * 109.47157 * 62.53409 * 9 8 6 12 12 C 1.53005 * 109.47308 * 182.53672 * 9 8 6 13 13 N 1.46500 * 109.47318 * 180.02562 * 12 9 8 14 14 C 1.36941 * 119.99884 * 179.72361 * 13 12 9 15 15 H 1.08000 * 119.99962 * 0.27453 * 14 13 12 16 16 C 1.38811 * 119.99857 * 180.27200 * 14 13 12 17 17 N 1.31624 * 119.99784 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47486 * 89.99829 * 18 16 14 20 20 H 1.48498 * 109.46959 * 209.99919 * 18 16 14 21 21 H 1.48503 * 109.46983 * 329.99841 * 18 16 14 22 22 C 1.50702 * 109.47187 * 240.00138 * 2 1 3 23 23 C 1.38265 * 119.99584 * 120.00004 * 22 2 1 24 24 C 1.38218 * 120.02937 * 179.97438 * 23 22 2 25 25 C 1.38235 * 120.01128 * 0.02562 * 24 23 22 26 26 C 1.38330 * 119.98806 * 359.97438 * 25 24 23 27 27 Cl 1.73598 * 120.01351 * 180.02562 * 26 25 24 28 28 C 1.38192 * 119.99414 * 299.72012 * 22 2 1 29 29 H 1.08999 * 109.46872 * 189.98849 * 1 2 3 30 30 H 1.08993 * 109.46973 * 309.99119 * 1 2 3 31 31 H 1.08993 * 109.46809 * 69.99324 * 1 2 3 32 32 H 1.09000 * 109.46785 * 265.22159 * 7 6 4 33 33 H 1.08995 * 109.47260 * 25.22471 * 7 6 4 34 34 H 1.09002 * 109.46968 * 145.22542 * 7 6 4 35 35 H 1.09007 * 109.47430 * 336.19660 * 8 6 4 36 36 H 1.08999 * 109.47291 * 216.19165 * 8 6 4 37 37 H 0.96693 * 113.99981 * 60.00337 * 11 9 8 38 38 H 1.08994 * 109.47007 * 59.99448 * 12 9 8 39 39 H 1.09005 * 109.46794 * 299.99782 * 12 9 8 40 40 H 0.97003 * 119.99717 * 359.97438 * 13 12 9 41 41 H 0.96996 * 119.99580 * 180.02562 * 17 16 14 42 42 H 1.08001 * 119.98334 * 359.97313 * 23 22 2 43 43 H 1.07997 * 119.99279 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.00384 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.00448 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.5732 -1.7912 1.1284 6 7 1.8807 -0.1447 2.4444 7 6 2.4834 -0.7698 3.6242 8 6 1.1130 1.0952 2.5839 9 6 -0.3235 0.7624 2.9921 10 1 -0.7675 0.0984 2.2504 11 8 -0.3190 0.1172 4.2672 12 6 -1.1417 2.0526 3.0763 13 7 -2.5170 1.7340 3.4678 14 6 -3.4373 2.7376 3.6134 15 1 -3.1504 3.7634 3.4353 16 6 -4.7390 2.4363 3.9899 17 7 -5.0887 1.1859 4.2064 18 14 -5.9946 3.8050 4.1879 19 1 -6.6858 4.0338 2.8936 20 1 -6.9904 3.4179 5.2192 21 1 -5.3057 5.0517 4.6082 22 6 2.0324 -0.7104 -1.2305 23 6 2.8273 -0.0383 -2.1405 24 6 3.2888 -0.6893 -3.2691 25 6 2.9555 -2.0128 -3.4888 26 6 2.1602 -2.6857 -2.5787 27 17 1.7417 -4.3479 -2.8536 28 6 1.7032 -2.0351 -1.4462 29 1 -0.3633 -1.0121 0.1782 30 1 -0.3633 0.6604 0.7873 31 1 -0.3633 0.3516 -0.9656 32 1 1.7473 -1.4076 4.1135 33 1 3.3399 -1.3710 3.3193 34 1 2.8115 0.0045 4.3179 35 1 1.1063 1.6274 1.6326 36 1 1.5718 1.7226 3.3480 37 1 0.0629 0.6514 4.9769 38 1 -1.1450 2.5448 2.1038 39 1 -0.6977 2.7166 3.8180 40 1 -2.7747 0.8126 3.6274 41 1 -5.9984 0.9754 4.4691 42 1 3.0876 0.9958 -1.9695 43 1 3.9100 -0.1640 -3.9793 44 1 3.3165 -2.5214 -4.3704 45 1 1.0857 -2.5612 -0.7331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332606008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -72.788624 kcal Electronic energy + Delta-G solvation = -27526.599439 eV Core-core repulsion = 23569.523804 eV Total energy + Delta-G solvation = -3957.075635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68578 -40.02396 -38.89371 -37.47885 -36.35256 -35.73125 -35.18523 -33.17692 -31.68354 -31.15741 -30.31099 -28.17094 -27.01491 -25.35810 -24.56107 -23.61997 -22.66173 -22.60289 -20.09501 -19.18720 -18.31676 -18.14000 -17.47370 -17.27569 -16.62178 -16.53896 -16.39230 -16.23905 -15.91012 -15.37207 -14.99990 -14.74941 -14.67057 -14.54759 -14.37374 -14.18684 -13.92040 -13.65223 -13.34049 -13.19733 -13.08535 -12.92532 -12.74811 -12.71476 -12.58818 -12.47627 -12.29582 -12.16446 -12.11646 -11.90262 -11.77075 -11.66223 -11.14999 -10.93894 -10.77331 -9.84196 -9.65041 -9.55336 -8.96079 -7.91180 -5.20149 0.18109 0.32149 1.15815 1.49319 1.51001 1.53477 1.59292 1.99901 2.58237 2.68480 3.35654 3.41860 3.51471 3.56957 3.79334 3.84716 4.00446 4.07602 4.11375 4.21327 4.23725 4.32223 4.46223 4.48949 4.50075 4.54012 4.64457 4.68298 4.74079 4.75570 4.84524 4.96891 4.98850 5.01956 5.20513 5.25083 5.28461 5.37454 5.50581 5.52374 5.53615 5.86501 6.28940 6.32510 6.93935 7.11556 7.36623 8.15018 8.34985 9.32227 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.002536 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.170836 B =11036.667770 C =11756.591640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.063 4.063 3 H 0.141 0.859 4 C 0.511 3.489 5 O -0.573 6.573 6 N -0.601 5.601 7 C 0.088 3.912 8 C 0.081 3.919 9 C 0.084 3.916 10 H 0.086 0.914 11 O -0.567 6.567 12 C 0.121 3.879 13 N -0.742 5.742 14 C -0.240 4.240 15 H 0.082 0.918 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.972 3.028 19 H -0.288 1.288 20 H -0.301 1.301 21 H -0.265 1.265 22 C -0.070 4.070 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.116 4.116 26 C -0.055 4.055 27 Cl -0.084 7.084 28 C -0.092 4.092 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.382 0.618 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.149 0.851 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.125 0.656 -13.201 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.083 4.083 3 H 0.159 0.841 4 C 0.300 3.700 5 O -0.453 6.453 6 N -0.332 5.332 7 C -0.055 4.055 8 C -0.042 4.042 9 C 0.024 3.976 10 H 0.104 0.896 11 O -0.374 6.374 12 C -0.006 4.006 13 N -0.385 5.385 14 C -0.371 4.371 15 H 0.100 0.900 16 C -0.272 4.272 17 N -0.622 5.622 18 Si 0.801 3.199 19 H -0.215 1.215 20 H -0.228 1.228 21 H -0.190 1.190 22 C -0.071 4.071 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.082 4.082 27 Cl -0.055 7.055 28 C -0.111 4.111 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.230 0.770 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.178 0.822 43 H 0.184 0.816 44 H 0.166 0.834 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.076 -0.355 -13.586 25.924 hybrid contribution -1.224 -0.128 0.857 1.499 sum 20.852 -0.482 -12.729 24.435 Atomic orbital electron populations 1.22150 0.91691 1.02438 1.04808 1.20330 0.97676 1.01319 0.89024 0.84115 1.20961 0.78331 0.85327 0.85384 1.90697 1.45493 1.22273 1.86804 1.47719 1.52143 1.26252 1.07101 1.21685 0.97642 0.99135 0.86991 1.22530 0.90165 0.85560 1.05973 1.22768 0.94703 0.94089 0.86080 0.89608 1.86627 1.85871 1.46152 1.18738 1.21504 0.84963 0.95525 0.98622 1.42487 1.06574 1.06502 1.82953 1.19662 0.90789 0.89746 1.36947 0.90045 1.25594 0.99802 0.98295 1.03492 1.69854 1.18394 1.18503 1.55472 0.85159 0.78896 0.78931 0.76891 1.21522 1.22775 1.19007 1.19461 0.98566 0.93102 0.95988 1.21513 0.95690 1.01544 0.93533 1.21463 0.99560 0.93386 0.98003 1.21350 0.97302 0.95678 0.99098 1.21082 1.02912 0.86114 0.98065 1.98356 1.92683 1.18295 1.96183 1.20806 0.99938 0.95031 0.95277 0.94050 0.89916 0.89601 0.93484 0.92055 0.88482 0.86464 0.86757 0.76987 0.93942 0.94489 0.79535 0.94264 0.82165 0.81608 0.83367 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 7.78 71.98 0.56 -2.70 16 2 C -0.06 -1.20 2.06 -12.29 -0.03 -1.22 16 3 H 0.14 1.64 6.86 -2.38 -0.02 1.63 16 4 C 0.51 12.89 6.87 87.65 0.60 13.49 16 5 O -0.57 -19.04 14.33 -3.06 -0.04 -19.08 16 6 N -0.60 -12.84 2.86 -846.76 -2.42 -15.26 16 7 C 0.09 1.80 9.80 127.77 1.25 3.05 16 8 C 0.08 1.39 4.63 86.38 0.40 1.79 16 9 C 0.08 2.25 2.39 30.60 0.07 2.32 16 10 H 0.09 2.70 5.73 -2.38 -0.01 2.69 16 11 O -0.57 -17.13 11.88 -148.98 -1.77 -18.90 16 12 C 0.12 3.96 5.91 86.38 0.51 4.47 16 13 N -0.74 -35.56 5.49 -343.44 -1.89 -37.45 16 14 C -0.24 -12.75 9.99 84.03 0.84 -11.91 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 17 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 18 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C -0.07 -1.47 4.48 -19.87 -0.09 -1.56 16 23 C -0.11 -1.57 9.67 22.27 0.22 -1.35 16 24 C -0.11 -1.45 10.05 22.26 0.22 -1.22 16 25 C -0.12 -2.03 9.83 22.29 0.22 -1.81 16 26 C -0.06 -1.29 6.32 22.32 0.14 -1.15 16 27 Cl -0.08 -1.98 28.96 -2.72 -0.08 -2.06 16 28 C -0.09 -2.35 7.72 22.29 0.17 -2.18 16 29 H 0.04 1.07 7.74 -2.39 -0.02 1.05 16 30 H 0.08 1.77 3.73 -2.39 -0.01 1.76 16 31 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.05 1.14 7.70 -2.39 -0.02 1.12 16 33 H 0.06 1.39 7.37 -2.39 -0.02 1.38 16 34 H 0.10 1.34 8.01 -2.39 -0.02 1.32 16 35 H 0.12 1.48 5.29 -2.38 -0.01 1.47 16 36 H 0.11 1.37 8.02 -2.39 -0.02 1.35 16 37 H 0.38 8.75 9.04 -74.06 -0.67 8.08 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.37 20.13 7.54 -92.71 -0.70 19.43 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.16 1.31 7.95 -2.91 -0.02 1.29 16 43 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 44 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.11 3.19 7.43 -2.91 -0.02 3.17 16 Total: -1.00 -76.26 379.50 1.33 -74.93 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.34 Total: 34.09 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.56 Total: -4.02 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.02 Total: -112.13 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.81 Total: -37.98 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -76.26 1.33 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332606008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -76.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds