Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99877 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00391 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00069 * 180.02562 * 11 10 9 14 14 S 1.81001 * 109.47011 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99974 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99699 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.00142 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99998 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47368 * 89.99751 * 19 17 15 21 21 H 1.48503 * 109.46914 * 209.99846 * 19 17 15 22 22 H 1.48504 * 109.46817 * 329.99441 * 19 17 15 23 23 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 24 24 C 1.34517 * 125.79068 * 119.71879 * 23 2 1 25 25 C 1.41385 * 106.84167 * 179.89094 * 24 23 2 26 26 C 1.34515 * 106.84081 * 0.36604 * 25 24 23 27 27 O 1.34302 * 108.42138 * 359.77730 * 26 25 24 28 28 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 29 29 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 32 32 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 33 33 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 34 34 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 35 35 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 36 36 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 37 37 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 38 38 H 0.96992 * 119.99973 * 359.97438 * 10 9 8 39 39 H 1.09002 * 109.46788 * 299.98995 * 13 11 10 40 40 H 1.08998 * 109.47474 * 59.99475 * 13 11 10 41 41 H 0.96995 * 120.00076 * 179.97438 * 18 17 15 42 42 H 1.07995 * 126.57743 * 0.02562 * 24 23 2 43 43 H 1.07999 * 126.57738 * 180.16999 * 25 24 23 44 44 H 1.08001 * 125.78663 * 179.75054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 6 2.1801 -0.9520 6.1490 10 7 1.6869 -0.2649 7.3452 11 6 2.0074 -0.7291 8.5692 12 8 2.7038 -1.7159 8.6805 13 6 1.4997 -0.0227 9.7998 14 16 2.0964 -0.8808 11.2775 15 6 1.3755 0.1281 12.5293 16 1 0.7744 0.9823 12.2547 17 6 1.5803 -0.1748 13.8683 18 7 2.3125 -1.2162 14.2030 19 14 0.8154 0.8945 15.1954 20 1 -0.5306 0.3700 15.5390 21 1 1.6776 0.8754 16.4043 22 1 0.6914 2.2881 14.6977 23 6 2.0322 -0.7103 -1.2305 24 6 2.8044 -0.1703 -2.1905 25 6 3.0376 -1.1845 -3.1476 26 6 2.3872 -2.2814 -2.7193 27 8 1.7800 -1.9883 -1.5577 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.1490 0.5383 2.5436 32 1 1.8264 -1.9720 3.6462 33 1 3.2802 -0.9450 3.6548 34 1 2.0395 0.8009 4.9042 35 1 0.5857 -0.2261 4.8957 36 1 1.8159 -1.9793 6.1445 37 1 3.2701 -0.9529 6.1534 38 1 1.1303 0.5244 7.2563 39 1 1.8629 1.0050 9.8046 40 1 0.4097 -0.0229 9.7952 41 1 2.4559 -1.4276 15.1387 42 1 3.1768 0.8430 -2.2228 43 1 3.6227 -1.0948 -4.0509 44 1 2.3579 -3.2357 -3.2241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349723491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -71.061607 kcal Electronic energy + Delta-G solvation = -25013.265764 eV Core-core repulsion = 21058.308724 eV Total energy + Delta-G solvation = -3954.957039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.93464 -40.18639 -39.20055 -36.41524 -34.85219 -34.41386 -33.20467 -32.44087 -31.59187 -29.29474 -28.84887 -26.03266 -25.46104 -24.52048 -22.19359 -22.12618 -21.55463 -20.40691 -20.19523 -18.07753 -17.81493 -17.35092 -16.63464 -16.41590 -16.25894 -16.09295 -15.65772 -15.48079 -14.82470 -14.81507 -14.70212 -14.23181 -13.92651 -13.74244 -13.23209 -13.15841 -13.15620 -13.00084 -12.83783 -12.70588 -12.39929 -12.16796 -12.12483 -11.96044 -11.94960 -11.35190 -11.07358 -11.03719 -10.77586 -10.30472 -10.18957 -9.83027 -9.52565 -9.44543 -9.08380 -8.94042 -8.83594 -8.24929 -6.51423 -6.22697 -3.93576 1.36159 2.17800 2.23437 2.57855 2.70972 3.04754 3.06947 3.21434 3.27281 3.31258 3.68749 3.99103 4.15266 4.19240 4.36859 4.50359 4.56652 4.59875 4.65187 4.70864 4.78466 5.00062 5.11750 5.12489 5.14874 5.18421 5.28579 5.44147 5.45941 5.50507 5.54644 5.60937 5.73405 5.74709 5.86566 5.87534 5.94780 6.11244 6.13092 6.55062 6.80680 6.98726 7.58201 7.65475 7.75866 8.33931 8.57841 9.22552 10.84756 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.045955 B = 0.001310 C = 0.001287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.147047 B =21375.371865 C =21746.345816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 H 0.126 0.874 4 C 0.514 3.486 5 O -0.522 6.522 6 N -0.728 5.728 7 C 0.121 3.879 8 C -0.142 4.142 9 C 0.124 3.876 10 N -0.740 5.740 11 C 0.531 3.469 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.009 3.991 24 C -0.205 4.205 25 C -0.217 4.217 26 C -0.035 4.035 27 O -0.161 6.161 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 6.751 -34.742 35.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.144 0.856 4 C 0.299 3.701 5 O -0.396 6.396 6 N -0.381 5.381 7 C -0.002 4.002 8 C -0.180 4.180 9 C -0.001 4.001 10 N -0.395 5.395 11 C 0.317 3.683 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.042 4.042 24 C -0.225 4.225 25 C -0.236 4.236 26 C -0.103 4.103 27 O -0.056 6.056 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.268 4.043 -34.296 34.688 hybrid contribution -1.602 2.695 0.508 3.176 sum -4.870 6.738 -33.788 34.796 Atomic orbital electron populations 1.21827 0.91152 1.03868 1.03499 1.19884 0.98262 0.99255 0.87587 0.85640 1.20397 0.80528 0.84850 0.84294 1.90779 1.36773 1.25589 1.86501 1.45924 1.54374 1.32301 1.05530 1.21266 0.99996 0.96547 0.82437 1.21973 1.02048 1.00530 0.93479 1.21103 0.99699 0.96489 0.82795 1.45959 1.55495 1.32685 1.05356 1.20326 0.79784 0.84368 0.83826 1.90715 1.36477 1.25484 1.86291 1.23530 1.04370 1.03931 0.98566 1.85427 1.67647 1.38375 0.91929 1.22866 1.37377 1.15604 0.92616 0.90927 1.24989 0.95036 0.95566 0.97946 1.70015 1.36379 1.25661 1.18202 0.86168 0.78985 0.80113 0.80229 1.20265 1.20735 1.19706 1.21482 1.02314 0.82950 0.97485 1.21546 1.03565 1.01326 0.96031 1.21790 1.05729 0.93521 1.02530 1.24063 0.98808 1.00820 0.86653 1.84030 1.58971 1.27559 1.35006 0.90680 0.91291 0.90970 0.76426 0.90790 0.90785 0.90425 0.90431 0.91224 0.91223 0.76835 0.89206 0.89205 0.92158 0.83495 0.83439 0.78132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.07 37.16 0.34 -0.24 16 2 C -0.03 -0.17 3.13 -92.92 -0.29 -0.46 16 3 H 0.13 0.38 8.10 -51.93 -0.42 -0.04 16 4 C 0.51 4.50 7.15 -10.99 -0.08 4.42 16 5 O -0.52 -7.17 15.80 -1.23 -0.02 -7.19 16 6 N -0.73 -4.36 5.45 -60.29 -0.33 -4.69 16 7 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 8 C -0.14 -0.86 5.44 -26.73 -0.15 -1.00 16 9 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 10 N -0.74 -9.05 5.56 -60.29 -0.33 -9.39 16 11 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16 12 O -0.52 -11.65 15.86 5.55 0.09 -11.56 16 13 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 19 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.01 0.08 5.20 -35.62 -0.19 -0.11 16 24 C -0.21 -1.62 10.78 -39.70 -0.43 -2.05 16 25 C -0.22 -1.63 10.91 -39.70 -0.43 -2.07 16 26 C -0.04 -0.28 12.09 29.42 0.36 0.08 16 27 O -0.16 -1.66 10.35 -1.09 -0.01 -1.67 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.13 7.56 -51.93 -0.39 -0.26 16 31 H 0.40 1.09 7.89 -40.82 -0.32 0.77 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 3.53 8.47 -40.82 -0.35 3.19 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -39.48 395.54 -8.25 -47.73 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.52 Total: -0.79 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.58 Total: -5.41 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.07 Total: -39.43 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.06 Total: -20.42 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.48 -8.25 -47.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349723491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -39.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds