Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.47101 * 2 1 4 4 C 1.52994 * 109.47701 * 120.00066 * 2 1 3 5 5 C 1.53001 * 109.47722 * 185.00385 * 4 2 1 6 6 S 1.81397 * 109.47281 * 179.97438 * 5 4 2 7 7 C 1.81402 * 101.91868 * 179.97438 * 6 5 4 8 8 O 1.42095 * 108.57927 * 294.48464 * 6 5 4 9 9 O 1.42101 * 108.57866 * 65.51463 * 6 5 4 10 10 N 1.46499 * 109.47130 * 240.00446 * 2 1 3 11 11 C 1.34776 * 120.00310 * 84.99604 * 10 2 1 12 12 O 1.21586 * 120.00216 * 0.02562 * 11 10 2 13 13 N 1.34779 * 120.00121 * 179.97438 * 11 10 2 14 14 C 1.39959 * 120.00052 * 184.52151 * 13 11 10 15 15 C 1.39285 * 119.94486 * 144.36680 * 14 13 11 16 16 C 1.38488 * 120.42423 * 179.97438 * 15 14 13 17 17 C 1.37679 * 120.32666 * 359.97438 * 16 15 14 18 18 C 1.40745 * 119.88076 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.20885 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00144 * 155.38191 * 19 18 17 21 21 C 1.39938 * 120.00135 * 335.38105 * 19 18 17 22 22 N 1.30836 * 119.99754 * 344.59012 * 21 19 18 23 23 Si 1.86796 * 119.99962 * 164.58786 * 21 19 18 24 24 H 1.48497 * 109.47264 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46713 * 120.00040 * 23 21 19 26 26 H 1.48496 * 109.47030 * 239.99981 * 23 21 19 27 27 C 1.38234 * 119.94682 * 324.09199 * 14 13 11 28 28 H 1.08999 * 109.47287 * 60.00197 * 1 2 3 29 29 H 1.09004 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46889 * 299.99639 * 1 2 3 31 31 H 1.09010 * 109.47038 * 305.00172 * 4 2 1 32 32 H 1.09004 * 109.47295 * 64.99781 * 4 2 1 33 33 H 1.09001 * 109.46586 * 300.00292 * 5 4 2 34 34 H 1.09004 * 109.47228 * 59.99356 * 5 4 2 35 35 H 1.08999 * 109.47124 * 60.00429 * 7 6 5 36 36 H 1.09002 * 109.46899 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47328 * 300.00310 * 7 6 5 38 38 H 0.96995 * 119.99925 * 264.99181 * 10 2 1 39 39 H 0.97000 * 120.00047 * 4.52586 * 13 11 10 40 40 H 1.07998 * 119.78602 * 359.97438 * 15 14 13 41 41 H 1.08010 * 119.83566 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.05927 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99439 * 179.97438 * 22 21 19 44 44 H 1.08009 * 120.15724 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5650 -0.6132 1.3136 6 16 4.1696 -1.4677 2.7951 7 6 5.9616 -1.2162 2.6675 8 8 3.6954 -0.7757 3.9421 9 8 3.8970 -2.8557 2.6601 10 7 2.0183 -0.6905 -1.1962 11 6 2.1470 -0.0181 -2.3572 12 8 1.8582 1.1617 -2.4117 13 7 2.5968 -0.6533 -3.4575 14 6 2.8204 0.0648 -4.6378 15 6 3.8818 -0.2803 -5.4711 16 6 4.1119 0.4232 -6.6416 17 6 3.2928 1.4720 -6.9948 18 6 2.2164 1.8321 -6.1626 19 6 1.3705 2.9078 -6.5188 20 1 0.3593 2.9474 -6.1417 21 6 1.8436 3.9210 -7.3601 22 7 3.1281 4.0465 -7.5747 23 14 0.6412 5.0943 -8.1767 24 1 -0.7443 4.7428 -7.7741 25 1 0.9416 6.4854 -7.7524 26 1 0.7705 4.9880 -9.6522 27 6 1.9842 1.1118 -4.9775 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -0.2617 2.1370 32 1 1.7518 -1.7715 1.2055 33 1 3.9995 -1.0726 0.4258 34 1 3.8533 0.4371 1.3572 35 1 6.1798 -0.1483 2.6708 36 1 6.4562 -1.6903 3.5152 37 1 6.3254 -1.6586 1.7401 38 1 2.2491 -1.6316 -1.1527 39 1 2.7654 -1.6082 -3.4315 40 1 4.5295 -1.1018 -5.2027 41 1 4.9375 0.1472 -7.2810 42 1 3.4760 2.0174 -7.9088 43 1 3.4560 4.7486 -8.1582 44 1 1.1584 1.3775 -4.3339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364368279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -81.919581 kcal Electronic energy + Delta-G solvation = -26811.586790 eV Core-core repulsion = 22856.158914 eV Total energy + Delta-G solvation = -3955.427876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.08040 -37.75061 -37.34966 -36.51434 -36.30948 -34.36900 -33.14138 -32.42614 -30.36390 -29.85067 -29.78794 -27.73987 -25.27567 -24.67423 -22.35663 -20.98287 -20.72600 -20.13512 -19.23926 -18.12720 -17.63463 -16.99460 -16.63041 -16.40373 -16.03751 -15.42276 -15.11167 -14.78556 -14.52426 -14.39597 -14.06035 -13.78389 -13.68553 -13.62352 -13.26590 -12.95430 -12.89977 -12.46095 -12.42457 -12.36440 -12.09582 -12.04592 -11.83829 -11.67176 -11.48529 -11.34318 -11.19683 -11.09537 -10.67278 -10.64307 -10.46862 -10.16414 -9.72037 -9.53551 -9.18908 -8.99649 -8.82962 -7.41549 -6.86732 -6.68199 -4.30894 -0.42899 2.32224 2.74031 2.86819 3.03982 3.11022 3.17230 3.19816 3.22296 3.60362 3.69348 3.98415 4.12971 4.26615 4.35920 4.46858 4.53793 4.61361 4.68258 5.06180 5.11384 5.22458 5.23695 5.35884 5.50580 5.63423 5.75180 5.90192 6.18708 6.25607 6.41672 6.58501 6.80805 6.81500 7.07179 7.14337 7.28057 7.36960 7.71173 7.85596 8.02886 8.13850 8.28235 8.45199 8.70030 8.92649 9.00274 9.06887 10.25017 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002256 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.949433 B =12406.227309 C =12969.626997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.095 0.905 4 C -0.118 4.118 5 C -0.610 4.610 6 S 2.420 3.580 7 C -0.657 4.657 8 O -0.941 6.941 9 O -0.941 6.941 10 N -0.749 5.749 11 C 0.697 3.303 12 O -0.562 6.562 13 N -0.682 5.682 14 C 0.165 3.835 15 C -0.264 4.264 16 C -0.093 4.093 17 C -0.175 4.175 18 C 0.117 3.883 19 C -0.454 4.454 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.796 5.796 23 Si 0.909 3.091 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.273 1.273 27 C -0.208 4.208 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.391 0.609 39 H 0.393 0.607 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.278 0.722 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -10.438 16.463 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.113 0.887 4 C -0.157 4.157 5 C -0.739 4.739 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.938 6.938 9 O -0.938 6.938 10 N -0.407 5.407 11 C 0.397 3.603 12 O -0.437 6.437 13 N -0.329 5.329 14 C 0.073 3.927 15 C -0.286 4.286 16 C -0.112 4.112 17 C -0.194 4.194 18 C 0.113 3.887 19 C -0.484 4.484 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.422 5.422 23 Si 0.734 3.266 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.230 4.230 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.225 0.775 39 H 0.227 0.773 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.510 -9.614 17.004 19.695 hybrid contribution 0.503 0.081 -0.978 1.102 sum 3.013 -9.533 16.027 18.890 Atomic orbital electron populations 1.22238 0.95001 1.02253 1.03139 1.20666 0.93954 0.97316 0.81783 0.88743 1.21678 0.90521 1.03203 1.00295 1.30358 1.06959 1.15487 1.21141 1.07830 0.78381 0.76065 0.77428 1.30272 1.26377 1.12121 1.11900 1.93604 1.78592 1.75628 1.45966 1.93602 1.83366 1.30106 1.86753 1.45269 1.72949 1.13382 1.09054 1.16006 0.78884 0.85309 0.80104 1.90991 1.54804 1.14043 1.83847 1.42582 1.69510 1.10842 1.09927 1.17226 0.95741 0.95161 0.84557 1.20012 1.01379 1.06733 1.00461 1.20448 0.98565 0.96403 0.95791 1.21405 0.98734 0.97974 1.01320 1.17535 0.91481 0.90777 0.88860 1.19596 0.99661 1.04457 1.24681 0.90482 1.25909 0.95411 0.98057 0.94944 1.69839 1.13773 1.29201 1.29350 0.86250 0.81554 0.79582 0.79254 1.18428 1.20034 1.19775 1.21086 1.02645 1.01056 0.98202 0.91210 0.92450 0.91575 0.88479 0.89578 0.84765 0.84444 0.85222 0.85306 0.85231 0.77531 0.77335 0.89498 0.89151 0.86104 0.91070 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.48 37.16 0.35 -1.37 16 2 C 0.17 1.75 2.57 -67.93 -0.17 1.58 16 3 H 0.09 1.16 7.58 -51.92 -0.39 0.77 16 4 C -0.12 -0.85 4.76 -26.73 -0.13 -0.98 16 5 C -0.61 -3.47 5.69 37.16 0.21 -3.26 16 6 S 2.42 15.03 5.36 -107.50 -0.58 14.46 16 7 C -0.66 -2.38 10.62 101.05 1.07 -1.31 16 8 O -0.94 -9.39 18.10 -57.83 -1.05 -10.43 16 9 O -0.94 -9.20 18.10 -57.83 -1.05 -10.25 16 10 N -0.75 -8.62 4.53 -58.68 -0.27 -8.89 16 11 C 0.70 12.02 8.36 -86.92 -0.73 11.29 16 12 O -0.56 -12.53 13.49 5.29 0.07 -12.46 16 13 N -0.68 -11.75 5.34 -14.27 -0.08 -11.83 16 14 C 0.17 3.70 6.28 -83.76 -0.53 3.17 16 15 C -0.26 -5.74 9.97 -39.10 -0.39 -6.13 16 16 C -0.09 -2.16 10.01 -39.69 -0.40 -2.56 16 17 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 18 C 0.12 3.21 5.58 -106.85 -0.60 2.61 16 19 C -0.45 -12.51 9.06 -37.74 -0.34 -12.85 16 20 H 0.08 2.08 7.89 -52.49 -0.41 1.66 16 21 C 0.07 1.90 5.19 -17.34 -0.09 1.81 16 22 N -0.80 -20.99 10.82 55.55 0.60 -20.39 16 23 Si 0.91 19.18 29.59 -169.99 -5.03 14.15 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.21 -5.39 8.43 -38.69 -0.33 -5.72 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.13 0.63 7.75 -51.92 -0.40 0.23 16 34 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.39 3.23 8.62 -40.82 -0.35 2.87 16 39 H 0.39 5.11 8.84 -40.82 -0.36 4.74 16 40 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.12 3.26 6.07 -52.49 -0.32 2.94 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.11 3.01 6.27 -52.48 -0.33 2.68 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -37.91 382.07 -10.36 -48.28 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.36 Total: 10.24 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.40 Total: -18.63 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.26 Total: -41.11 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -2.02 Total: -33.15 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 16 Polarization: 15.03 SS G_CDS: -0.58 Total: 14.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.91 -10.36 -48.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364368279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.643 kcal (2) G-P(sol) polarization free energy of solvation -37.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds