Wall clock time and date at job start Sat Apr 11 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.47101 * 2 1 4 4 C 1.52994 * 109.47701 * 120.00066 * 2 1 3 5 5 C 1.53001 * 109.47722 * 185.00385 * 4 2 1 6 6 S 1.81397 * 109.47281 * 179.97438 * 5 4 2 7 7 C 1.81402 * 101.91868 * 179.97438 * 6 5 4 8 8 O 1.42095 * 108.57927 * 294.48464 * 6 5 4 9 9 O 1.42101 * 108.57866 * 65.51463 * 6 5 4 10 10 N 1.46499 * 109.47130 * 240.00446 * 2 1 3 11 11 C 1.34776 * 120.00310 * 84.99604 * 10 2 1 12 12 O 1.21586 * 120.00216 * 0.02562 * 11 10 2 13 13 N 1.34779 * 120.00121 * 179.97438 * 11 10 2 14 14 C 1.39959 * 120.00052 * 184.52151 * 13 11 10 15 15 C 1.39285 * 119.94486 * 144.36680 * 14 13 11 16 16 C 1.38488 * 120.42423 * 179.97438 * 15 14 13 17 17 C 1.37679 * 120.32666 * 359.97438 * 16 15 14 18 18 C 1.40745 * 119.88076 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.20885 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00144 * 155.38191 * 19 18 17 21 21 C 1.39938 * 120.00135 * 335.38105 * 19 18 17 22 22 N 1.30836 * 119.99754 * 344.59012 * 21 19 18 23 23 Si 1.86796 * 119.99962 * 164.58786 * 21 19 18 24 24 H 1.48497 * 109.47264 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46713 * 120.00040 * 23 21 19 26 26 H 1.48496 * 109.47030 * 239.99981 * 23 21 19 27 27 C 1.38234 * 119.94682 * 324.09199 * 14 13 11 28 28 H 1.08999 * 109.47287 * 60.00197 * 1 2 3 29 29 H 1.09004 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46889 * 299.99639 * 1 2 3 31 31 H 1.09010 * 109.47038 * 305.00172 * 4 2 1 32 32 H 1.09004 * 109.47295 * 64.99781 * 4 2 1 33 33 H 1.09001 * 109.46586 * 300.00292 * 5 4 2 34 34 H 1.09004 * 109.47228 * 59.99356 * 5 4 2 35 35 H 1.08999 * 109.47124 * 60.00429 * 7 6 5 36 36 H 1.09002 * 109.46899 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47328 * 300.00310 * 7 6 5 38 38 H 0.96995 * 119.99925 * 264.99181 * 10 2 1 39 39 H 0.97000 * 120.00047 * 4.52586 * 13 11 10 40 40 H 1.07998 * 119.78602 * 359.97438 * 15 14 13 41 41 H 1.08010 * 119.83566 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.05927 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99439 * 179.97438 * 22 21 19 44 44 H 1.08009 * 120.15724 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5650 -0.6132 1.3136 6 16 4.1696 -1.4677 2.7951 7 6 5.9616 -1.2162 2.6675 8 8 3.6954 -0.7757 3.9421 9 8 3.8970 -2.8557 2.6601 10 7 2.0183 -0.6905 -1.1962 11 6 2.1470 -0.0181 -2.3572 12 8 1.8582 1.1617 -2.4117 13 7 2.5968 -0.6533 -3.4575 14 6 2.8204 0.0648 -4.6378 15 6 3.8818 -0.2803 -5.4711 16 6 4.1119 0.4232 -6.6416 17 6 3.2928 1.4720 -6.9948 18 6 2.2164 1.8321 -6.1626 19 6 1.3705 2.9078 -6.5188 20 1 0.3593 2.9474 -6.1417 21 6 1.8436 3.9210 -7.3601 22 7 3.1281 4.0465 -7.5747 23 14 0.6412 5.0943 -8.1767 24 1 -0.7443 4.7428 -7.7741 25 1 0.9416 6.4854 -7.7524 26 1 0.7705 4.9880 -9.6522 27 6 1.9842 1.1118 -4.9775 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -0.2617 2.1370 32 1 1.7518 -1.7715 1.2055 33 1 3.9995 -1.0726 0.4258 34 1 3.8533 0.4371 1.3572 35 1 6.1798 -0.1483 2.6708 36 1 6.4562 -1.6903 3.5152 37 1 6.3254 -1.6586 1.7401 38 1 2.2491 -1.6316 -1.1527 39 1 2.7654 -1.6082 -3.4315 40 1 4.5295 -1.1018 -5.2027 41 1 4.9375 0.1472 -7.2810 42 1 3.4760 2.0174 -7.9088 43 1 3.4560 4.7486 -8.1582 44 1 1.1584 1.3775 -4.3339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364368279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:25 Heat of formation + Delta-G solvation = -110.976301 kcal Electronic energy + Delta-G solvation = -26812.846784 eV Core-core repulsion = 22856.158914 eV Total energy + Delta-G solvation = -3956.687870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48089 -39.32424 -37.96614 -37.66506 -37.00212 -36.09585 -34.85940 -33.42484 -31.71601 -31.19232 -30.27182 -29.40738 -27.22890 -25.40296 -23.72276 -22.73174 -21.94138 -21.63531 -19.75593 -19.60886 -19.26181 -17.77393 -17.36473 -17.25128 -16.96007 -16.89533 -16.56326 -16.41954 -16.00593 -15.53818 -15.06614 -14.94239 -14.64082 -14.60168 -14.09025 -13.96678 -13.91333 -13.90206 -13.51473 -13.13299 -13.11642 -13.10240 -13.00505 -12.82557 -12.82212 -12.55148 -12.41821 -12.19972 -12.11629 -11.96952 -11.89280 -11.54903 -11.29649 -11.24924 -10.98125 -10.62426 -10.12980 -9.35517 -8.66990 -8.58286 -6.34714 -0.89786 0.95392 1.06808 1.36319 1.49220 1.51989 1.71876 1.89593 2.20649 2.23993 2.72902 2.76116 3.15356 3.33010 3.58969 3.75561 3.78264 3.87805 4.12490 4.23805 4.37240 4.40300 4.50874 4.60017 4.68156 4.70756 4.78097 4.94479 5.00355 5.03219 5.09791 5.15244 5.18124 5.25577 5.30363 5.36965 5.57264 5.76548 5.87217 6.09689 6.16340 6.23116 6.40338 6.72680 6.97380 7.04495 7.16471 7.66716 8.35705 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002256 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.949433 B =12406.227309 C =12969.626997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.166 3.834 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.610 4.610 6 S 2.435 3.565 7 C -0.646 4.646 8 O -0.984 6.984 9 O -0.980 6.980 10 N -0.722 5.722 11 C 0.694 3.306 12 O -0.616 6.616 13 N -0.670 5.670 14 C 0.175 3.825 15 C -0.249 4.249 16 C -0.092 4.092 17 C -0.201 4.201 18 C 0.085 3.915 19 C -0.499 4.499 20 H 0.062 0.938 21 C 0.034 3.966 22 N -0.826 5.826 23 Si 0.983 3.017 24 H -0.264 1.264 25 H -0.266 1.266 26 H -0.257 1.257 27 C -0.235 4.235 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.413 0.587 39 H 0.418 0.582 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -12.097 17.128 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.740 4.740 6 S 2.622 3.378 7 C -0.798 4.798 8 O -0.982 6.982 9 O -0.977 6.977 10 N -0.380 5.380 11 C 0.395 3.605 12 O -0.495 6.495 13 N -0.319 5.319 14 C 0.081 3.919 15 C -0.271 4.271 16 C -0.111 4.111 17 C -0.221 4.221 18 C 0.082 3.918 19 C -0.529 4.529 20 H 0.081 0.919 21 C -0.180 4.180 22 N -0.452 5.452 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.190 1.190 26 H -0.181 1.181 27 C -0.257 4.257 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.168 0.832 38 H 0.250 0.750 39 H 0.256 0.744 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.141 -11.374 17.731 21.469 hybrid contribution 0.093 0.473 -1.064 1.168 sum 4.234 -10.901 16.667 20.361 Atomic orbital electron populations 1.22222 0.95000 1.03081 1.02204 1.20779 0.94044 0.96726 0.82402 0.90950 1.21698 0.91718 1.03759 0.98627 1.30348 1.05939 1.16413 1.21290 1.07136 0.79481 0.74621 0.76535 1.30152 1.22458 1.13764 1.13429 1.93549 1.80379 1.76073 1.48157 1.93549 1.84786 1.32250 1.87144 1.45039 1.71289 1.14161 1.07473 1.16217 0.78343 0.84798 0.81190 1.90975 1.56920 1.16822 1.84798 1.42317 1.69324 1.11807 1.08468 1.17261 0.94656 0.94042 0.85944 1.20450 1.00727 1.06849 0.99031 1.20830 0.98473 0.95120 0.96669 1.21366 0.99816 0.99712 1.01193 1.17873 0.92479 0.91525 0.89889 1.19769 0.99519 1.06298 1.27311 0.91929 1.26730 0.97266 0.99258 0.94790 1.69876 1.15244 1.30199 1.29893 0.85156 0.78616 0.77223 0.78639 1.18745 1.19040 1.18150 1.21028 1.03475 1.03236 0.97956 0.94965 0.90698 0.89733 0.87416 0.88031 0.83270 0.83245 0.83461 0.84474 0.83232 0.75031 0.74412 0.84921 0.85979 0.87654 0.90160 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.48 71.98 0.68 -2.67 16 2 C 0.17 3.27 2.57 44.99 0.12 3.39 16 3 H 0.07 1.79 7.58 -2.38 -0.02 1.77 16 4 C -0.12 -1.46 4.76 30.59 0.15 -1.31 16 5 C -0.61 -5.40 5.69 71.98 0.41 -4.99 16 6 S 2.44 25.73 5.36 -56.49 -0.30 25.42 16 7 C -0.65 -2.55 10.62 113.37 1.20 -1.34 16 8 O -0.98 -18.76 18.10 -127.37 -2.31 -21.06 16 9 O -0.98 -17.65 18.10 -127.37 -2.30 -19.96 16 10 N -0.72 -15.35 4.53 -457.81 -2.08 -17.42 16 11 C 0.69 23.56 8.36 179.05 1.50 25.05 16 12 O -0.62 -28.48 13.49 -3.99 -0.05 -28.53 16 13 N -0.67 -21.89 5.34 -317.32 -1.69 -23.59 16 14 C 0.17 7.69 6.28 38.09 0.24 7.93 16 15 C -0.25 -10.14 9.97 22.58 0.23 -9.91 16 16 C -0.09 -4.15 10.01 22.20 0.22 -3.93 16 17 C -0.20 -10.81 8.69 22.75 0.20 -10.61 16 18 C 0.09 4.92 5.58 -21.31 -0.12 4.80 16 19 C -0.50 -29.20 9.06 23.46 0.21 -28.99 16 20 H 0.06 3.66 7.89 -2.91 -0.02 3.64 16 21 C 0.03 1.79 5.19 85.25 0.44 2.24 16 22 N -0.83 -44.91 10.82 21.83 0.24 -44.67 16 23 Si 0.98 40.50 29.59 68.60 2.03 42.53 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 27 C -0.23 -12.68 8.43 22.85 0.19 -12.49 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.15 0.87 7.75 -2.39 -0.02 0.85 16 34 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.14 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.41 5.45 8.62 -92.71 -0.80 4.65 16 39 H 0.42 9.37 8.84 -92.71 -0.82 8.55 16 40 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.11 5.90 6.07 -2.91 -0.02 5.88 16 43 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 44 H 0.09 5.05 6.27 -2.91 -0.02 5.03 16 Total: -1.00 -88.29 382.07 -1.39 -89.67 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.58 Total: 30.44 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 5.67 Total: -32.84 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.53 Total: -85.68 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -4.66 Total: -69.55 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 25.73 SS G_CDS: -0.30 Total: 25.42 kcal Total: -88.29 -1.39 -89.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364368279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.301 kcal (2) G-P(sol) polarization free energy of solvation -88.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds