Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47530 * 2 1 4 4 S 1.81403 * 109.46851 * 119.99700 * 2 1 3 5 5 O 1.42095 * 108.57819 * 305.51455 * 4 2 1 6 6 O 1.42100 * 108.57923 * 174.48250 * 4 2 1 7 7 C 1.81406 * 101.92024 * 60.00055 * 4 2 1 8 8 C 1.52994 * 109.47183 * 179.97438 * 7 4 2 9 9 N 1.46494 * 109.47395 * 180.02562 * 8 7 4 10 10 C 1.34779 * 120.00343 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00022 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.39959 * 119.99583 * 174.29043 * 12 10 9 14 14 C 1.39290 * 119.94307 * 145.42670 * 13 12 10 15 15 C 1.38488 * 120.42403 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32542 * 0.29743 * 15 14 13 17 17 C 1.40749 * 119.87885 * 359.43258 * 16 15 14 18 18 C 1.41410 * 120.20531 * 180.31234 * 17 16 15 19 19 H 1.08000 * 119.99443 * 214.42379 * 18 17 16 20 20 C 1.39932 * 120.00288 * 34.42826 * 18 17 16 21 21 N 1.30833 * 119.99587 * 5.53272 * 20 18 17 22 22 Si 1.86795 * 120.00024 * 185.53626 * 20 18 17 23 23 H 1.48502 * 109.47109 * 59.99658 * 22 20 18 24 24 H 1.48500 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46905 * 299.99776 * 22 20 18 26 26 C 1.38236 * 119.94514 * 325.39533 * 13 12 10 27 27 H 1.09002 * 109.47512 * 300.00407 * 1 2 3 28 28 H 1.09007 * 109.46977 * 59.99900 * 1 2 3 29 29 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47512 * 239.99593 * 2 1 3 31 31 H 1.08996 * 109.47190 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46637 * 300.00070 * 3 2 1 33 33 H 1.09002 * 109.47055 * 59.99313 * 3 2 1 34 34 H 1.08995 * 109.47091 * 59.99803 * 7 4 2 35 35 H 1.08997 * 109.46820 * 300.00343 * 7 4 2 36 36 H 1.09008 * 109.47421 * 59.99804 * 8 7 4 37 37 H 1.08999 * 109.47175 * 300.00292 * 8 7 4 38 38 H 0.97007 * 120.00091 * 359.97438 * 9 8 7 39 39 H 0.96995 * 120.00130 * 354.29199 * 12 10 9 40 40 H 1.07995 * 119.78747 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.83503 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.05688 * 179.69942 * 16 15 14 43 43 H 0.97001 * 119.99616 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.15986 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.5478 -0.2494 2.6248 6 8 3.5495 -0.9573 1.3992 7 6 1.4227 -2.5108 1.2748 8 6 1.8340 -3.3935 2.4549 9 7 1.2597 -4.7308 2.2879 10 6 1.4904 -5.6836 3.2128 11 8 2.1749 -5.4332 4.1860 12 7 0.9616 -6.9138 3.0594 13 6 1.2971 -7.9363 3.9543 14 6 0.3487 -8.8956 4.3012 15 6 0.6702 -9.9119 5.1853 16 6 1.9301 -9.9815 5.7361 17 6 2.9004 -9.0224 5.3905 18 6 4.1986 -9.0911 5.9470 19 1 4.7406 -8.1832 6.1667 20 6 4.7809 -10.3355 6.2130 21 7 4.1715 -11.4342 5.8480 22 14 6.4281 -10.4277 7.0890 23 1 6.3139 -9.7918 8.4261 24 1 6.8243 -11.8498 7.2499 25 1 7.4553 -9.7148 6.2880 26 6 2.5694 -7.9927 4.4919 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.7892 -2.9508 0.3474 35 1 0.3359 -2.4369 1.2372 36 1 1.4678 -2.9536 3.3826 37 1 2.9208 -3.4673 2.4920 38 1 0.7132 -4.9305 1.5117 39 1 0.3485 -7.0905 2.3288 40 1 -0.6436 -8.8466 3.8779 41 1 -0.0725 -10.6510 5.4473 42 1 2.1746 -10.7732 6.4288 43 1 4.5753 -12.2967 6.0321 44 1 3.3056 -7.2498 4.2228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413570393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -80.944198 kcal Electronic energy + Delta-G solvation = -26436.029686 eV Core-core repulsion = 22480.644106 eV Total energy + Delta-G solvation = -3955.385581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.98864 -37.47361 -37.40581 -36.43940 -35.64201 -35.45773 -34.33107 -32.99876 -31.16432 -29.75374 -28.15029 -27.69583 -25.23425 -24.22774 -22.80693 -21.64166 -20.84850 -20.17083 -19.13292 -18.17527 -17.68962 -17.50704 -16.63712 -16.21067 -15.88119 -15.71352 -15.21773 -15.07216 -14.64755 -14.41099 -14.25032 -14.10979 -13.90742 -13.69807 -13.06631 -12.94445 -12.84048 -12.63666 -12.45432 -12.35638 -12.33001 -12.09906 -12.00990 -11.96245 -11.61894 -11.37779 -11.13827 -11.06033 -10.90584 -10.70406 -10.43183 -10.20734 -9.66586 -9.45074 -9.20489 -9.04973 -8.95285 -7.32993 -6.86054 -6.56469 -4.30190 -0.53679 2.25849 2.70274 2.85678 2.97307 3.14836 3.19714 3.24518 3.26189 3.49482 3.67404 3.92334 3.97195 4.04142 4.05506 4.38308 4.46493 4.52317 4.76771 4.79957 4.87154 4.97849 5.01949 5.15382 5.33864 5.42471 5.44167 5.46841 5.71726 6.23965 6.36345 6.39773 6.73289 6.78744 7.06419 7.13795 7.27581 7.36988 7.72034 7.81638 7.99890 8.17638 8.27495 8.41497 8.72684 8.91558 9.03255 9.04354 10.37486 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002132 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.822018 B =13127.750614 C =14319.781333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.574 4.574 3 C -0.144 4.144 4 S 2.424 3.576 5 O -0.926 6.926 6 O -0.928 6.928 7 C -0.635 4.635 8 C 0.153 3.847 9 N -0.747 5.747 10 C 0.697 3.303 11 O -0.561 6.561 12 N -0.679 5.679 13 C 0.162 3.838 14 C -0.252 4.252 15 C -0.097 4.097 16 C -0.158 4.158 17 C 0.121 3.879 18 C -0.464 4.464 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.812 5.812 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.200 4.200 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.395 0.605 39 H 0.394 0.606 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.278 0.722 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 19.037 -15.984 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.684 4.684 3 C -0.202 4.202 4 S 2.604 3.396 5 O -0.923 6.923 6 O -0.925 6.925 7 C -0.763 4.763 8 C 0.028 3.972 9 N -0.405 5.405 10 C 0.397 3.603 11 O -0.436 6.436 12 N -0.326 5.326 13 C 0.070 3.930 14 C -0.274 4.274 15 C -0.116 4.116 16 C -0.178 4.178 17 C 0.118 3.882 18 C -0.494 4.494 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.439 5.439 22 Si 0.738 3.262 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.222 4.222 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.229 0.771 39 H 0.228 0.772 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.089 0.911 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.681 19.363 -14.400 25.323 hybrid contribution -0.416 -0.711 -1.359 1.589 sum -8.097 18.652 -15.758 25.725 Atomic orbital electron populations 1.21761 0.89914 1.03720 1.05179 1.30054 1.06995 1.10113 1.21192 1.21647 1.02243 0.91541 1.04770 1.08188 0.76198 0.77576 0.77645 1.93605 1.79231 1.74214 1.45274 1.93621 1.26659 1.85671 1.86596 1.30714 1.14423 1.22663 1.08481 1.20675 0.99826 0.81665 0.95079 1.44968 1.57969 1.11046 1.26562 1.15958 0.80998 0.80364 0.82956 1.91007 1.42198 1.80204 1.30166 1.42545 1.49386 1.08436 1.32227 1.17246 0.93877 0.88151 0.93747 1.20055 0.97068 1.01329 1.08938 1.20479 0.96648 0.96867 0.97587 1.21363 0.91595 1.02104 1.02763 1.17509 0.92829 0.89582 0.88296 1.19495 1.00050 0.92988 1.36904 0.90527 1.25844 0.99446 0.95248 0.93727 1.69775 1.38278 0.98679 1.37161 0.86300 0.81724 0.77661 0.80552 1.18971 1.20504 1.19130 1.21124 0.94274 1.03402 1.03406 0.90164 0.90153 0.91110 0.84459 0.90674 0.89945 0.90645 0.84159 0.84122 0.89884 0.89838 0.77104 0.77234 0.89259 0.88936 0.86408 0.91150 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 8.94 37.16 0.33 -0.11 16 2 C -0.57 -2.37 3.31 -26.73 -0.09 -2.46 16 3 C -0.14 -0.67 9.20 37.16 0.34 -0.33 16 4 S 2.42 18.96 4.24 -107.50 -0.46 18.50 16 5 O -0.93 -10.44 17.91 -57.83 -1.04 -11.48 16 6 O -0.93 -10.92 18.10 -57.83 -1.05 -11.97 16 7 C -0.64 -3.76 5.47 37.15 0.20 -3.55 16 8 C 0.15 1.75 5.68 -4.05 -0.02 1.73 16 9 N -0.75 -9.14 5.56 -65.23 -0.36 -9.50 16 10 C 0.70 12.71 8.28 -86.91 -0.72 11.99 16 11 O -0.56 -13.13 14.13 5.29 0.07 -13.06 16 12 N -0.68 -12.07 5.34 -14.27 -0.08 -12.15 16 13 C 0.16 3.70 6.25 -83.76 -0.52 3.18 16 14 C -0.25 -5.55 9.97 -39.10 -0.39 -5.94 16 15 C -0.10 -2.27 10.02 -39.69 -0.40 -2.66 16 16 C -0.16 -4.21 8.62 -38.84 -0.33 -4.54 16 17 C 0.12 3.38 5.50 -106.85 -0.59 2.80 16 18 C -0.46 -13.05 9.04 -37.74 -0.34 -13.39 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 21 N -0.81 -21.72 10.97 55.55 0.61 -21.11 16 22 Si 0.91 19.83 29.56 -169.99 -5.03 14.80 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.20 -5.30 8.39 -38.69 -0.32 -5.63 16 27 H 0.08 0.29 8.06 -51.93 -0.42 -0.13 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.08 6.56 -51.93 -0.34 -0.26 16 30 H 0.14 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.14 0.42 6.87 -51.93 -0.36 0.07 16 36 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.40 3.15 8.49 -40.82 -0.35 2.81 16 39 H 0.39 5.20 8.84 -40.82 -0.36 4.84 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.22 6.48 -52.49 -0.34 2.88 16 43 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 44 H 0.11 2.96 6.51 -52.49 -0.34 2.61 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -38.38 380.31 -10.81 -49.19 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.28 Total: 8.14 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.94 Total: -17.10 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.17 Total: -42.76 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -2.01 Total: -36.50 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: 18.96 SS G_CDS: -0.46 Total: 18.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.38 -10.81 -49.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413570393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.758 kcal (2) G-P(sol) polarization free energy of solvation -38.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds