Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47530 * 2 1 4 4 S 1.81403 * 109.46851 * 119.99700 * 2 1 3 5 5 O 1.42095 * 108.57819 * 305.51455 * 4 2 1 6 6 O 1.42100 * 108.57923 * 174.48250 * 4 2 1 7 7 C 1.81406 * 101.92024 * 60.00055 * 4 2 1 8 8 C 1.52994 * 109.47183 * 179.97438 * 7 4 2 9 9 N 1.46494 * 109.47395 * 180.02562 * 8 7 4 10 10 C 1.34779 * 120.00343 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00022 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.39959 * 119.99583 * 174.29043 * 12 10 9 14 14 C 1.39290 * 119.94307 * 145.42670 * 13 12 10 15 15 C 1.38488 * 120.42403 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32542 * 0.29743 * 15 14 13 17 17 C 1.40749 * 119.87885 * 359.43258 * 16 15 14 18 18 C 1.41410 * 120.20531 * 180.31234 * 17 16 15 19 19 H 1.08000 * 119.99443 * 214.42379 * 18 17 16 20 20 C 1.39932 * 120.00288 * 34.42826 * 18 17 16 21 21 N 1.30833 * 119.99587 * 5.53272 * 20 18 17 22 22 Si 1.86795 * 120.00024 * 185.53626 * 20 18 17 23 23 H 1.48502 * 109.47109 * 59.99658 * 22 20 18 24 24 H 1.48500 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46905 * 299.99776 * 22 20 18 26 26 C 1.38236 * 119.94514 * 325.39533 * 13 12 10 27 27 H 1.09002 * 109.47512 * 300.00407 * 1 2 3 28 28 H 1.09007 * 109.46977 * 59.99900 * 1 2 3 29 29 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47512 * 239.99593 * 2 1 3 31 31 H 1.08996 * 109.47190 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46637 * 300.00070 * 3 2 1 33 33 H 1.09002 * 109.47055 * 59.99313 * 3 2 1 34 34 H 1.08995 * 109.47091 * 59.99803 * 7 4 2 35 35 H 1.08997 * 109.46820 * 300.00343 * 7 4 2 36 36 H 1.09008 * 109.47421 * 59.99804 * 8 7 4 37 37 H 1.08999 * 109.47175 * 300.00292 * 8 7 4 38 38 H 0.97007 * 120.00091 * 359.97438 * 9 8 7 39 39 H 0.96995 * 120.00130 * 354.29199 * 12 10 9 40 40 H 1.07995 * 119.78747 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.83503 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.05688 * 179.69942 * 16 15 14 43 43 H 0.97001 * 119.99616 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.15986 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.5478 -0.2494 2.6248 6 8 3.5495 -0.9573 1.3992 7 6 1.4227 -2.5108 1.2748 8 6 1.8340 -3.3935 2.4549 9 7 1.2597 -4.7308 2.2879 10 6 1.4904 -5.6836 3.2128 11 8 2.1749 -5.4332 4.1860 12 7 0.9616 -6.9138 3.0594 13 6 1.2971 -7.9363 3.9543 14 6 0.3487 -8.8956 4.3012 15 6 0.6702 -9.9119 5.1853 16 6 1.9301 -9.9815 5.7361 17 6 2.9004 -9.0224 5.3905 18 6 4.1986 -9.0911 5.9470 19 1 4.7406 -8.1832 6.1667 20 6 4.7809 -10.3355 6.2130 21 7 4.1715 -11.4342 5.8480 22 14 6.4281 -10.4277 7.0890 23 1 6.3139 -9.7918 8.4261 24 1 6.8243 -11.8498 7.2499 25 1 7.4553 -9.7148 6.2880 26 6 2.5694 -7.9927 4.4919 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.7892 -2.9508 0.3474 35 1 0.3359 -2.4369 1.2372 36 1 1.4678 -2.9536 3.3826 37 1 2.9208 -3.4673 2.4920 38 1 0.7132 -4.9305 1.5117 39 1 0.3485 -7.0905 2.3288 40 1 -0.6436 -8.8466 3.8779 41 1 -0.0725 -10.6510 5.4473 42 1 2.1746 -10.7732 6.4288 43 1 4.5753 -12.2967 6.0321 44 1 3.3056 -7.2498 4.2228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413570393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -111.557227 kcal Electronic energy + Delta-G solvation = -26437.357167 eV Core-core repulsion = 22480.644106 eV Total energy + Delta-G solvation = -3956.713061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49465 -39.23649 -38.12351 -37.16763 -36.71513 -36.07679 -35.94911 -34.83452 -32.18279 -31.71823 -29.62394 -28.23410 -27.22814 -25.11913 -23.53560 -22.98475 -22.68770 -21.78154 -19.88720 -19.57897 -19.31194 -18.21564 -17.56569 -17.29007 -17.11036 -16.82166 -16.60137 -16.42169 -15.95619 -15.76952 -15.45850 -15.26761 -14.82592 -14.63757 -14.25305 -14.11524 -13.99065 -13.56460 -13.41984 -13.23316 -13.22407 -13.08316 -13.05481 -12.91906 -12.85920 -12.82149 -12.32056 -12.30968 -12.18421 -12.08593 -11.94367 -11.53952 -11.27151 -11.15531 -11.04397 -10.78218 -10.27460 -9.30624 -8.71514 -8.51202 -6.39165 -1.11454 0.92378 1.01693 1.35970 1.47605 1.48721 1.60909 1.73895 2.12383 2.23363 2.59939 2.79902 2.98970 3.30171 3.35977 3.60675 3.62911 3.70785 3.84093 4.22189 4.24031 4.46857 4.47848 4.61575 4.62919 4.63680 4.67492 4.80553 4.90663 5.03284 5.09200 5.13187 5.13871 5.16517 5.25286 5.29244 5.34235 5.71499 5.83281 6.04833 6.11382 6.16912 6.38395 6.70439 6.96246 7.01271 7.07608 7.54228 8.42209 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002132 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.822018 B =13127.750614 C =14319.781333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.539 4.539 3 C -0.159 4.159 4 S 2.403 3.597 5 O -0.976 6.976 6 O -0.983 6.983 7 C -0.616 4.616 8 C 0.139 3.861 9 N -0.716 5.716 10 C 0.691 3.309 11 O -0.620 6.620 12 N -0.665 5.665 13 C 0.170 3.830 14 C -0.236 4.236 15 C -0.094 4.094 16 C -0.183 4.183 17 C 0.087 3.913 18 C -0.509 4.509 19 H 0.058 0.942 20 C 0.034 3.966 21 N -0.837 5.837 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.266 1.266 26 C -0.228 4.228 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.422 0.578 39 H 0.421 0.579 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.286 0.714 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 19.052 -19.196 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.653 4.653 3 C -0.217 4.217 4 S 2.590 3.410 5 O -0.973 6.973 6 O -0.980 6.980 7 C -0.744 4.744 8 C 0.014 3.986 9 N -0.375 5.375 10 C 0.391 3.609 11 O -0.499 6.499 12 N -0.314 5.314 13 C 0.076 3.924 14 C -0.257 4.257 15 C -0.113 4.113 16 C -0.203 4.203 17 C 0.085 3.915 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.179 4.179 21 N -0.464 5.464 22 Si 0.804 3.196 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.191 1.191 26 C -0.250 4.250 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.191 0.809 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.198 0.802 35 H 0.199 0.801 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.261 0.739 39 H 0.260 0.740 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.483 19.398 -17.661 28.250 hybrid contribution 0.253 -0.590 -0.521 0.826 sum -10.229 18.808 -18.181 28.088 Atomic orbital electron populations 1.21960 0.88333 1.05738 1.05604 1.29793 1.08015 1.09029 1.18446 1.21832 1.02093 0.92174 1.05626 1.08439 0.75262 0.78468 0.78798 1.93542 1.79424 1.75413 1.48914 1.93555 1.30142 1.86600 1.87729 1.30557 1.16918 1.19477 1.07482 1.20769 0.98685 0.81855 0.97331 1.44641 1.57073 1.10019 1.25802 1.16257 0.80363 0.81128 0.83176 1.90986 1.44626 1.81266 1.33029 1.42241 1.49680 1.07297 1.32181 1.17297 0.92640 0.89104 0.93402 1.20520 0.98564 0.99479 1.07153 1.20877 0.95906 0.97732 0.96780 1.21304 0.93042 1.01978 1.03985 1.17839 0.93477 0.90914 0.89307 1.19640 1.01078 0.93432 1.39832 0.92333 1.26628 1.03054 0.94282 0.93913 1.69818 1.39849 0.99182 1.37571 0.85257 0.76825 0.78519 0.79038 1.18758 1.18405 1.19085 1.21064 0.95902 1.03094 1.04938 0.91270 0.88215 0.88435 0.80882 0.91376 0.87389 0.91489 0.80216 0.80087 0.91582 0.92172 0.73947 0.74045 0.84434 0.85501 0.88063 0.90325 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.28 8.94 71.98 0.64 0.37 16 2 C -0.54 -2.75 3.31 30.59 0.10 -2.65 16 3 C -0.16 -1.19 9.20 71.98 0.66 -0.53 16 4 S 2.40 36.49 4.24 -56.49 -0.24 36.25 16 5 O -0.98 -23.11 17.91 -127.37 -2.28 -25.39 16 6 O -0.98 -24.33 18.10 -127.37 -2.30 -26.63 16 7 C -0.62 -5.43 5.47 71.98 0.39 -5.04 16 8 C 0.14 3.12 5.68 86.38 0.49 3.61 16 9 N -0.72 -16.05 5.56 -478.54 -2.66 -18.71 16 10 C 0.69 24.86 8.28 179.05 1.48 26.34 16 11 O -0.62 -30.35 14.13 -3.99 -0.06 -30.41 16 12 N -0.66 -22.32 5.34 -317.31 -1.70 -24.01 16 13 C 0.17 7.62 6.25 38.10 0.24 7.86 16 14 C -0.24 -9.68 9.97 22.58 0.23 -9.46 16 15 C -0.09 -4.27 10.02 22.20 0.22 -4.04 16 16 C -0.18 -9.98 8.62 22.75 0.20 -9.78 16 17 C 0.09 5.15 5.50 -21.30 -0.12 5.03 16 18 C -0.51 -30.58 9.04 23.46 0.21 -30.37 16 19 H 0.06 3.56 7.85 -2.91 -0.02 3.53 16 20 C 0.03 1.85 5.31 85.25 0.45 2.30 16 21 N -0.84 -46.08 10.97 21.82 0.24 -45.84 16 22 Si 0.98 41.98 29.56 68.60 2.03 44.01 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C -0.23 -12.62 8.39 22.85 0.19 -12.43 16 27 H 0.07 0.33 8.06 -2.39 -0.02 0.31 16 28 H 0.10 -0.10 8.14 -2.38 -0.02 -0.11 16 29 H 0.10 -0.34 6.56 -2.39 -0.02 -0.35 16 30 H 0.17 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.18 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.18 0.15 6.87 -2.39 -0.02 0.13 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 4.89 8.49 -92.70 -0.79 4.10 16 39 H 0.42 9.41 8.84 -92.71 -0.82 8.59 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.10 5.75 6.48 -2.91 -0.02 5.73 16 43 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 44 H 0.08 4.85 6.51 -2.91 -0.02 4.83 16 Total: -1.00 -93.69 380.31 -2.15 -95.84 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.57 Total: 23.69 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 5.39 Total: -28.80 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -4.12 Total: -88.56 kcal Atomic # 8 Polarization: -77.78 SS G_CDS: -4.64 Total: -82.43 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 36.49 SS G_CDS: -0.24 Total: 36.25 kcal Total: -93.69 -2.15 -95.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413570393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.722 kcal (2) G-P(sol) polarization free energy of solvation -93.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds