Wall clock time and date at job start Sat Apr 11 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35790 * 116.99863 * 2 1 4 4 C 1.38019 * 123.46809 * 0.02562 * 3 2 1 5 5 C 1.33616 * 115.08578 * 179.97438 * 4 3 2 6 6 S 1.70582 * 111.14344 * 0.02562 * 5 4 3 7 7 C 1.37264 * 123.47051 * 180.02562 * 3 2 1 8 8 C 1.41720 * 125.47499 * 359.97438 * 7 3 2 9 9 O 1.21770 * 120.00096 * 311.30531 * 8 7 3 10 10 N 1.34782 * 119.99863 * 131.30853 * 8 7 3 11 11 C 1.47143 * 120.98119 * 4.05098 * 10 8 7 12 12 C 1.53294 * 108.38655 * 230.51313 * 11 10 8 13 13 O 1.42958 * 109.22624 * 307.70151 * 12 11 10 14 14 C 1.42969 * 114.16431 * 62.57545 * 13 12 11 15 15 H 1.09003 * 109.50704 * 57.40026 * 14 13 12 16 16 C 1.53001 * 109.51145 * 177.49800 * 14 13 12 17 17 H 1.09001 * 109.47124 * 175.00471 * 16 14 13 18 18 C 1.52999 * 109.47186 * 55.00240 * 16 14 13 19 19 N 1.46499 * 109.46980 * 295.00312 * 16 14 13 20 20 C 1.36939 * 120.00249 * 205.00167 * 19 16 14 21 21 H 1.08008 * 119.99611 * 359.97438 * 20 19 16 22 22 C 1.38813 * 120.00582 * 180.02562 * 20 19 16 23 23 N 1.31616 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00228 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47091 * 89.99717 * 24 22 20 26 26 H 1.48498 * 109.47189 * 209.99882 * 24 22 20 27 27 H 1.48503 * 109.46820 * 330.00082 * 24 22 20 28 28 C 1.47147 * 120.97841 * 183.77776 * 10 8 7 29 29 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46945 * 300.00469 * 1 2 3 31 31 H 1.08998 * 109.47083 * 60.00400 * 1 2 3 32 32 H 1.08006 * 122.46282 * 359.70646 * 4 3 2 33 33 H 1.07994 * 124.43149 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.68632 * 350.23959 * 11 10 8 35 35 H 1.09012 * 109.68170 * 110.79261 * 11 10 8 36 36 H 1.09000 * 109.51154 * 67.62731 * 12 11 10 37 37 H 1.09004 * 109.51337 * 187.72859 * 12 11 10 38 38 H 1.09001 * 109.46829 * 299.99846 * 18 16 14 39 39 H 1.09000 * 109.47199 * 60.00058 * 18 16 14 40 40 H 1.09000 * 109.46981 * 180.02562 * 18 16 14 41 41 H 0.97003 * 120.00399 * 24.99923 * 19 16 14 42 42 H 0.96997 * 120.00143 * 180.02562 * 23 22 20 43 43 H 1.09003 * 109.67889 * 249.20382 * 28 10 8 44 44 H 1.08995 * 109.69007 * 9.75750 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3652 2.4108 0.0005 5 6 2.1388 3.5002 0.0010 6 16 3.7922 3.0806 0.0001 7 6 3.4094 1.3646 -0.0005 8 6 4.3567 0.3106 -0.0006 9 8 4.2463 -0.6074 0.7919 10 7 5.3800 0.3242 -0.8778 11 6 5.5851 1.4647 -1.7846 12 6 5.7418 0.9260 -3.2112 13 8 6.7523 -0.0852 -3.2242 14 6 6.4458 -1.2292 -2.4234 15 1 5.5028 -1.6638 -2.7553 16 6 7.5631 -2.2650 -2.5631 17 1 7.3736 -3.0976 -1.8855 18 6 8.9049 -1.6181 -2.2135 19 7 7.6030 -2.7573 -3.9423 20 6 8.1213 -3.9956 -4.2127 21 1 8.5011 -4.6092 -3.4091 22 6 8.1596 -4.4619 -5.5196 23 7 7.6972 -3.7140 -6.4990 24 14 8.8673 -6.1509 -5.8884 25 1 7.7858 -7.1663 -5.8206 26 1 9.4626 -6.1518 -7.2488 27 1 9.9159 -6.4771 -4.8888 28 6 6.3284 -0.7984 -0.9526 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2865 2.4660 -0.0037 33 1 1.7661 4.5138 0.0010 34 1 4.7242 2.1314 -1.7365 35 1 6.4860 2.0061 -1.4956 36 1 4.7959 0.4997 -3.5454 37 1 6.0305 1.7388 -3.8777 38 1 9.0943 -0.7857 -2.8912 39 1 8.8752 -1.2519 -1.1873 40 1 9.7009 -2.3560 -2.3135 41 1 7.2622 -2.2061 -4.6641 42 1 7.7236 -4.0399 -7.4121 43 1 7.3028 -0.4810 -0.5813 44 1 5.9601 -1.6309 -0.3533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485650264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:02 Heat of formation + Delta-G solvation = -47.963043 kcal Electronic energy + Delta-G solvation = -27973.333158 eV Core-core repulsion = 24019.377748 eV Total energy + Delta-G solvation = -3953.955410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70913 -39.78995 -38.19494 -36.27685 -35.45407 -34.44322 -32.48846 -30.89930 -30.05743 -28.43605 -27.75293 -26.73112 -25.16703 -24.46095 -23.42155 -22.50097 -20.71347 -19.87190 -19.52150 -18.34856 -17.26945 -17.11439 -16.80963 -16.18538 -16.02965 -15.70927 -15.31438 -15.20405 -14.86442 -14.47529 -14.31166 -14.17907 -13.71765 -13.43076 -13.29858 -13.21810 -12.80893 -12.66639 -12.42778 -12.13813 -11.95550 -11.91100 -11.42067 -11.32990 -11.24893 -11.07055 -10.80443 -10.67269 -10.47912 -10.24287 -10.06816 -9.81238 -9.76082 -9.59895 -9.07367 -8.84713 -8.42095 -8.34635 -6.88074 -5.68782 -2.97187 0.26115 1.00071 1.42257 2.07932 2.73668 3.03870 3.29159 3.48519 3.53557 3.55212 4.04177 4.24917 4.58740 4.63209 4.75566 4.82056 4.83145 4.83338 4.97136 5.12932 5.17049 5.19220 5.26706 5.40705 5.41938 5.52018 5.64535 5.74813 5.74934 5.79007 5.90687 6.04706 6.07121 6.27982 6.45482 6.52959 6.71627 6.88483 6.90753 7.21979 7.33088 7.53982 7.76592 8.13320 8.49562 9.61334 10.19461 10.56264 11.53777 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002746 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.346034 B =10192.926378 C =10716.921576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.284 6.284 3 C 0.176 3.824 4 C -0.206 4.206 5 C -0.213 4.213 6 S 0.243 5.757 7 C -0.320 4.320 8 C 0.600 3.400 9 O -0.523 6.523 10 N -0.609 5.609 11 C 0.062 3.938 12 C 0.049 3.951 13 O -0.358 6.358 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.059 0.941 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.085 3.915 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.389 0.611 42 H 0.254 0.746 43 H 0.082 0.918 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 19.636 13.942 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.196 6.196 3 C 0.117 3.883 4 C -0.239 4.239 5 C -0.350 4.350 6 S 0.509 5.491 7 C -0.440 4.440 8 C 0.389 3.611 9 O -0.400 6.400 10 N -0.344 5.344 11 C -0.062 4.062 12 C -0.029 4.029 13 O -0.275 6.275 14 C 0.017 3.983 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.037 4.037 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.191 0.809 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.469 19.604 14.263 27.262 hybrid contribution -1.757 -1.183 -0.443 2.164 sum -14.226 18.421 13.821 27.069 Atomic orbital electron populations 1.23175 0.77855 1.04598 1.01316 1.86236 1.21430 1.24409 1.87529 1.18153 0.89934 0.85555 0.94662 1.20024 1.02090 0.90825 1.10990 1.25126 0.99730 1.03749 1.06426 1.83201 1.03061 0.94576 1.68301 1.22545 0.95477 0.98812 1.27140 1.15576 0.79951 0.84936 0.80686 1.90847 1.73962 1.36717 1.38514 1.48090 1.28561 1.20657 1.37087 1.22780 1.02920 0.88980 0.91501 1.22863 0.93168 0.92434 0.94465 1.88092 1.42486 1.28241 1.68729 1.23063 1.00298 0.86880 0.88068 0.91804 1.20200 0.90983 0.91804 0.89604 0.92273 1.22411 0.99867 1.01216 0.98708 1.42359 1.73935 1.18075 1.01715 1.19258 1.32425 0.92770 0.92385 0.91174 1.24731 1.02064 0.98452 0.95745 1.69679 1.52120 1.36985 0.99194 0.86207 0.78602 0.84235 0.77257 1.21810 1.21855 1.20780 1.22578 0.92669 0.89827 0.98625 0.87739 0.92487 0.92467 0.83269 0.80854 0.89044 0.90140 0.92878 0.87804 0.92442 0.94625 0.92922 0.77677 0.93622 0.90018 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.94 101.05 1.00 1.20 16 2 O -0.28 -3.67 10.25 -19.08 -0.20 -3.87 16 3 C 0.18 2.10 6.70 -40.02 -0.27 1.83 16 4 C -0.21 -1.68 9.17 -41.28 -0.38 -2.06 16 5 C -0.21 -1.42 10.90 29.11 0.32 -1.10 16 6 S 0.24 1.99 20.05 -107.50 -2.16 -0.17 16 7 C -0.32 -4.10 5.18 -38.61 -0.20 -4.30 16 8 C 0.60 9.57 7.20 -14.93 -0.11 9.47 16 9 O -0.52 -10.22 16.43 5.13 0.08 -10.14 16 10 N -0.61 -8.92 3.01 -175.40 -0.53 -9.44 16 11 C 0.06 0.72 5.98 -3.54 -0.02 0.70 16 12 C 0.05 0.65 6.98 37.31 0.26 0.91 16 13 O -0.36 -6.28 9.24 -35.23 -0.33 -6.61 16 14 C 0.08 1.38 2.62 -26.36 -0.07 1.31 16 15 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 16 C 0.18 3.83 2.77 -67.93 -0.19 3.64 16 17 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 18 C -0.16 -3.06 9.06 37.16 0.34 -2.73 16 19 N -0.72 -18.67 5.10 -53.42 -0.27 -18.95 16 20 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 24 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.09 1.35 5.82 -3.32 -0.02 1.33 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 31 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 32 H 0.15 0.83 6.99 -52.48 -0.37 0.46 16 33 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.09 0.88 4.41 -35.46 -0.16 0.72 16 35 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.14 7.56 -51.93 -0.39 0.74 16 39 H 0.03 0.56 6.41 -51.93 -0.33 0.23 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.39 10.87 7.58 -40.82 -0.31 10.56 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 1.21 6.28 -51.93 -0.33 0.88 16 44 H 0.10 1.68 7.11 -51.93 -0.37 1.31 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -36.11 369.01 -7.71 -43.82 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.00 Total: 7.17 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 0.42 Total: 2.82 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.08 Total: -56.39 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.44 Total: -20.61 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.16 Total: -0.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.11 -7.71 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485650264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.145 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds