Wall clock time and date at job start Sat Apr 11 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35781 * 117.00098 * 2 1 4 4 C 1.38023 * 123.47466 * 359.96801 * 3 2 1 5 5 C 1.33614 * 115.09046 * 180.02562 * 4 3 2 6 6 S 1.70579 * 111.14329 * 359.72498 * 5 4 3 7 7 C 1.37269 * 123.47006 * 180.02562 * 3 2 1 8 8 C 1.41721 * 125.47838 * 359.97142 * 7 3 2 9 9 O 1.21775 * 119.99603 * 318.96043 * 8 7 3 10 10 N 1.34775 * 120.00462 * 138.96052 * 8 7 3 11 11 C 1.47153 * 120.98061 * 354.33782 * 10 8 7 12 12 C 1.53294 * 108.38466 * 230.55990 * 11 10 8 13 13 O 1.42962 * 109.22106 * 307.69748 * 12 11 10 14 14 C 1.42959 * 114.16750 * 62.58065 * 13 12 11 15 15 H 1.08994 * 109.55529 * 57.37048 * 14 13 12 16 16 C 1.52998 * 109.50992 * 177.49669 * 14 13 12 17 17 H 1.09003 * 109.47045 * 184.74575 * 16 14 13 18 18 C 1.52996 * 109.47339 * 304.74456 * 16 14 13 19 19 N 1.46501 * 109.47313 * 64.74931 * 16 14 13 20 20 C 1.36938 * 120.00222 * 154.99945 * 19 16 14 21 21 H 1.08002 * 119.99873 * 0.02562 * 20 19 16 22 22 C 1.38805 * 120.00106 * 180.26924 * 20 19 16 23 23 N 1.31621 * 120.00214 * 179.72138 * 22 20 19 24 24 Si 1.86808 * 120.00037 * 359.72856 * 22 20 19 25 25 H 1.48503 * 109.46976 * 89.99256 * 24 22 20 26 26 H 1.48495 * 109.47039 * 209.99557 * 24 22 20 27 27 H 1.48501 * 109.46762 * 329.99733 * 24 22 20 28 28 C 1.47144 * 120.98566 * 174.36147 * 10 8 7 29 29 H 1.09008 * 109.46868 * 300.00774 * 1 2 3 30 30 H 1.09000 * 109.46852 * 60.00317 * 1 2 3 31 31 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.08006 * 122.45364 * 0.02562 * 4 3 2 33 33 H 1.07996 * 124.42840 * 179.97438 * 5 4 3 34 34 H 1.09008 * 109.67815 * 350.28018 * 11 10 8 35 35 H 1.08990 * 109.68406 * 110.79524 * 11 10 8 36 36 H 1.09002 * 109.51416 * 67.62035 * 12 11 10 37 37 H 1.09002 * 109.51176 * 187.77303 * 12 11 10 38 38 H 1.08998 * 109.47430 * 60.00095 * 18 16 14 39 39 H 1.08999 * 109.47183 * 180.02562 * 18 16 14 40 40 H 1.09002 * 109.47415 * 300.00366 * 18 16 14 41 41 H 0.97000 * 119.99862 * 334.99596 * 19 16 14 42 42 H 0.96999 * 120.00128 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.68178 * 9.71506 * 28 10 8 44 44 H 1.09001 * 109.68212 * 249.17003 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3653 2.4108 -0.0006 5 6 2.1390 3.5001 -0.0011 6 16 3.7923 3.0805 0.0069 7 6 3.4094 1.3645 -0.0005 8 6 4.3567 0.3104 -0.0005 9 8 4.1723 -0.6739 0.6923 10 7 5.4617 0.3974 -0.7672 11 6 5.6473 1.5166 -1.7044 12 6 6.0089 0.9416 -3.0787 13 8 7.1113 0.0424 -2.9374 14 6 6.8372 -1.0950 -2.1159 15 1 5.9835 -1.6393 -2.5194 16 6 8.0614 -2.0123 -2.0884 17 1 7.8237 -2.9188 -1.5318 18 6 8.4545 -2.3813 -3.5202 19 7 9.1767 -1.3190 -1.4390 20 6 10.1750 -2.0395 -0.8395 21 1 10.1404 -3.1190 -0.8458 22 6 11.2289 -1.3825 -0.2194 23 7 12.1856 -2.0750 0.3616 24 14 11.2892 0.4845 -0.2092 25 1 10.5873 0.9959 0.9955 26 1 12.7043 0.9339 -0.1857 27 1 10.6237 1.0079 -1.4292 28 6 6.5180 -0.6243 -0.6924 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2866 2.4660 -0.0008 33 1 1.7663 4.5138 -0.0020 34 1 4.7235 2.0906 -1.7781 35 1 6.4526 2.1609 -1.3520 36 1 5.1517 0.4055 -3.4861 37 1 6.2850 1.7533 -3.7517 38 1 8.6923 -1.4748 -4.0769 39 1 9.3264 -3.0351 -3.5006 40 1 7.6248 -2.8972 -4.0034 41 1 9.2080 -0.3495 -1.4337 42 1 12.9218 -1.6159 0.7952 43 1 6.1711 -1.4681 -0.0958 44 1 7.4116 -0.1959 -0.2382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485650267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:12 Heat of formation + Delta-G solvation = -44.300692 kcal Electronic energy + Delta-G solvation = -28316.936907 eV Core-core repulsion = 24363.140308 eV Total energy + Delta-G solvation = -3953.796599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69740 -39.82267 -38.23858 -36.27715 -35.61869 -34.53108 -32.28016 -30.96754 -30.18912 -28.87195 -28.08310 -26.96959 -25.10369 -24.05252 -23.30421 -22.51952 -20.67556 -19.90716 -19.63323 -18.37600 -17.65608 -17.19389 -16.74960 -16.29207 -16.13165 -15.68749 -15.42381 -15.01635 -14.83039 -14.57267 -14.30910 -14.15333 -13.74606 -13.48395 -13.39954 -13.16212 -12.83590 -12.66096 -12.41015 -12.18310 -11.95848 -11.91356 -11.60269 -11.40456 -11.31884 -11.23474 -10.88220 -10.81852 -10.54520 -10.25210 -10.03164 -9.89473 -9.82103 -9.50823 -9.07538 -8.89783 -8.42342 -8.34618 -7.19356 -5.70619 -3.05395 0.24791 1.03822 1.45107 2.05880 2.83621 3.06300 3.30379 3.43314 3.48555 3.50490 3.90522 4.24562 4.57625 4.65914 4.72665 4.77281 4.79588 4.83706 4.94845 5.07054 5.13091 5.16160 5.24416 5.32349 5.40188 5.43165 5.58150 5.62958 5.67372 5.73186 5.76233 5.97621 6.19197 6.30737 6.35987 6.50876 6.56117 6.77930 6.89942 7.11263 7.37685 7.39949 8.06201 8.19724 8.48671 9.27938 10.00105 10.21215 11.47805 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.003338 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.075905 B = 8386.784354 C = 8812.868231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.282 6.282 3 C 0.178 3.822 4 C -0.209 4.209 5 C -0.213 4.213 6 S 0.247 5.753 7 C -0.320 4.320 8 C 0.598 3.402 9 O -0.520 6.520 10 N -0.613 5.613 11 C 0.061 3.939 12 C 0.051 3.949 13 O -0.363 6.363 14 C 0.074 3.926 15 H 0.061 0.939 16 C 0.188 3.812 17 H 0.070 0.930 18 C -0.159 4.159 19 N -0.743 5.743 20 C -0.240 4.240 21 H 0.091 0.909 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.878 3.122 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.088 3.912 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.102 0.898 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.245 13.502 -5.307 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.194 6.194 3 C 0.118 3.882 4 C -0.242 4.242 5 C -0.351 4.351 6 S 0.513 5.487 7 C -0.440 4.440 8 C 0.386 3.614 9 O -0.397 6.397 10 N -0.348 5.348 11 C -0.063 4.063 12 C -0.027 4.027 13 O -0.282 6.282 14 C 0.015 3.985 15 H 0.079 0.921 16 C 0.078 3.922 17 H 0.088 0.912 18 C -0.219 4.219 19 N -0.387 5.387 20 C -0.370 4.370 21 H 0.109 0.891 22 C -0.190 4.190 23 N -0.583 5.583 24 Si 0.708 3.292 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.199 1.199 28 C -0.034 4.034 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.167 0.833 33 H 0.191 0.809 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.199 0.801 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.601 13.440 -4.889 28.456 hybrid contribution -1.822 0.905 0.152 2.040 sum -26.423 14.346 -4.737 30.437 Atomic orbital electron populations 1.23167 0.78042 1.04488 1.01293 1.86248 1.21235 1.24396 1.87490 1.18178 0.89997 0.85490 0.94544 1.20013 1.02027 0.90852 1.11328 1.25156 0.99926 1.03751 1.06218 1.83361 1.02659 0.94739 1.67955 1.22642 0.95430 0.98789 1.27145 1.15565 0.80211 0.85556 0.80028 1.90861 1.75229 1.31943 1.41711 1.48119 1.20140 1.26058 1.40488 1.22722 1.02920 0.89666 0.91023 1.22866 0.90799 0.94056 0.95025 1.88070 1.35929 1.34737 1.69417 1.22976 0.99172 0.87235 0.89104 0.92092 1.20241 0.85503 0.93028 0.93388 0.91248 1.22289 1.00367 1.01232 0.98048 1.42770 1.24412 1.04756 1.66737 1.19081 0.98764 0.92536 1.26633 0.89132 1.24630 0.97053 0.97024 1.00290 1.69699 1.12823 1.34088 1.41659 0.86624 0.76901 0.87726 0.77927 1.21186 1.21857 1.19873 1.22419 0.90010 0.92486 0.98486 0.92478 0.92586 0.87809 0.83337 0.80889 0.88992 0.90122 0.92991 0.87842 0.92593 0.92356 0.94535 0.80066 0.93146 0.87926 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.94 101.05 1.00 1.18 16 2 O -0.28 -3.55 10.05 -20.62 -0.21 -3.76 16 3 C 0.18 2.11 6.68 -40.01 -0.27 1.84 16 4 C -0.21 -1.71 9.17 -41.28 -0.38 -2.09 16 5 C -0.21 -1.48 10.90 29.11 0.32 -1.17 16 6 S 0.25 2.22 20.00 -107.50 -2.15 0.07 16 7 C -0.32 -4.24 5.20 -38.60 -0.20 -4.44 16 8 C 0.60 9.99 7.27 -14.93 -0.11 9.88 16 9 O -0.52 -10.65 16.15 3.56 0.06 -10.60 16 10 N -0.61 -9.54 3.02 -175.65 -0.53 -10.07 16 11 C 0.06 0.73 5.66 -3.53 -0.02 0.71 16 12 C 0.05 0.61 6.98 37.31 0.26 0.87 16 13 O -0.36 -5.91 9.24 -35.23 -0.33 -6.24 16 14 C 0.07 1.26 2.57 -26.58 -0.07 1.19 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.19 3.70 2.80 -67.93 -0.19 3.51 16 17 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 18 C -0.16 -2.91 9.30 37.16 0.35 -2.57 16 19 N -0.74 -17.65 4.05 -53.43 -0.22 -17.86 16 20 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 24 Si 0.88 22.44 27.73 -169.99 -4.71 17.72 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.27 -6.64 6.52 56.52 0.37 -6.27 16 28 C 0.09 1.56 5.84 -3.54 -0.02 1.54 16 29 H 0.06 0.32 7.88 -51.92 -0.41 -0.09 16 30 H 0.06 0.29 7.88 -51.93 -0.41 -0.12 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.15 0.81 6.99 -52.48 -0.37 0.45 16 33 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.09 0.90 4.81 -40.19 -0.19 0.70 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.05 7.57 -51.93 -0.39 0.65 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.37 8.74 4.94 -40.82 -0.20 8.54 16 42 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 43 H 0.10 1.94 7.06 -51.93 -0.37 1.58 16 44 H 0.09 1.79 6.94 -51.93 -0.36 1.43 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -36.38 366.73 -7.46 -43.84 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.09 Total: 6.66 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 0.42 Total: 3.60 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.03 Total: -56.83 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.48 Total: -20.59 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.15 Total: 0.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.38 -7.46 -43.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485650267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.462 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds