Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35781 * 117.00098 * 2 1 4 4 C 1.38023 * 123.47466 * 359.96801 * 3 2 1 5 5 C 1.33614 * 115.09046 * 180.02562 * 4 3 2 6 6 S 1.70579 * 111.14329 * 359.72498 * 5 4 3 7 7 C 1.37269 * 123.47006 * 180.02562 * 3 2 1 8 8 C 1.41721 * 125.47838 * 359.97142 * 7 3 2 9 9 O 1.21775 * 119.99603 * 318.96043 * 8 7 3 10 10 N 1.34775 * 120.00462 * 138.96052 * 8 7 3 11 11 C 1.47153 * 120.98061 * 354.33782 * 10 8 7 12 12 C 1.53294 * 108.38466 * 230.55990 * 11 10 8 13 13 O 1.42962 * 109.22106 * 307.69748 * 12 11 10 14 14 C 1.42959 * 114.16750 * 62.58065 * 13 12 11 15 15 H 1.08994 * 109.55529 * 57.37048 * 14 13 12 16 16 C 1.52998 * 109.50992 * 177.49669 * 14 13 12 17 17 H 1.09003 * 109.47045 * 184.74575 * 16 14 13 18 18 C 1.52996 * 109.47339 * 304.74456 * 16 14 13 19 19 N 1.46501 * 109.47313 * 64.74931 * 16 14 13 20 20 C 1.36938 * 120.00222 * 154.99945 * 19 16 14 21 21 H 1.08002 * 119.99873 * 0.02562 * 20 19 16 22 22 C 1.38805 * 120.00106 * 180.26924 * 20 19 16 23 23 N 1.31621 * 120.00214 * 179.72138 * 22 20 19 24 24 Si 1.86808 * 120.00037 * 359.72856 * 22 20 19 25 25 H 1.48503 * 109.46976 * 89.99256 * 24 22 20 26 26 H 1.48495 * 109.47039 * 209.99557 * 24 22 20 27 27 H 1.48501 * 109.46762 * 329.99733 * 24 22 20 28 28 C 1.47144 * 120.98566 * 174.36147 * 10 8 7 29 29 H 1.09008 * 109.46868 * 300.00774 * 1 2 3 30 30 H 1.09000 * 109.46852 * 60.00317 * 1 2 3 31 31 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.08006 * 122.45364 * 0.02562 * 4 3 2 33 33 H 1.07996 * 124.42840 * 179.97438 * 5 4 3 34 34 H 1.09008 * 109.67815 * 350.28018 * 11 10 8 35 35 H 1.08990 * 109.68406 * 110.79524 * 11 10 8 36 36 H 1.09002 * 109.51416 * 67.62035 * 12 11 10 37 37 H 1.09002 * 109.51176 * 187.77303 * 12 11 10 38 38 H 1.08998 * 109.47430 * 60.00095 * 18 16 14 39 39 H 1.08999 * 109.47183 * 180.02562 * 18 16 14 40 40 H 1.09002 * 109.47415 * 300.00366 * 18 16 14 41 41 H 0.97000 * 119.99862 * 334.99596 * 19 16 14 42 42 H 0.96999 * 120.00128 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.68178 * 9.71506 * 28 10 8 44 44 H 1.09001 * 109.68212 * 249.17003 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3653 2.4108 -0.0006 5 6 2.1390 3.5001 -0.0011 6 16 3.7923 3.0805 0.0069 7 6 3.4094 1.3645 -0.0005 8 6 4.3567 0.3104 -0.0005 9 8 4.1723 -0.6739 0.6923 10 7 5.4617 0.3974 -0.7672 11 6 5.6473 1.5166 -1.7044 12 6 6.0089 0.9416 -3.0787 13 8 7.1113 0.0424 -2.9374 14 6 6.8372 -1.0950 -2.1159 15 1 5.9835 -1.6393 -2.5194 16 6 8.0614 -2.0123 -2.0884 17 1 7.8237 -2.9188 -1.5318 18 6 8.4545 -2.3813 -3.5202 19 7 9.1767 -1.3190 -1.4390 20 6 10.1750 -2.0395 -0.8395 21 1 10.1404 -3.1190 -0.8458 22 6 11.2289 -1.3825 -0.2194 23 7 12.1856 -2.0750 0.3616 24 14 11.2892 0.4845 -0.2092 25 1 10.5873 0.9959 0.9955 26 1 12.7043 0.9339 -0.1857 27 1 10.6237 1.0079 -1.4292 28 6 6.5180 -0.6243 -0.6924 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2866 2.4660 -0.0008 33 1 1.7663 4.5138 -0.0020 34 1 4.7235 2.0906 -1.7781 35 1 6.4526 2.1609 -1.3520 36 1 5.1517 0.4055 -3.4861 37 1 6.2850 1.7533 -3.7517 38 1 8.6923 -1.4748 -4.0769 39 1 9.3264 -3.0351 -3.5006 40 1 7.6248 -2.8972 -4.0034 41 1 9.2080 -0.3495 -1.4337 42 1 12.9218 -1.6159 0.7952 43 1 6.1711 -1.4681 -0.0958 44 1 7.4116 -0.1959 -0.2382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485650267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -71.359134 kcal Electronic energy + Delta-G solvation = -28318.110249 eV Core-core repulsion = 24363.140308 eV Total energy + Delta-G solvation = -3954.969941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74731 -40.78771 -39.49246 -37.26509 -36.99621 -35.82889 -34.23907 -32.28557 -31.37846 -30.48611 -29.06697 -27.78790 -26.05656 -25.41868 -24.91881 -23.73950 -21.78168 -21.24151 -20.54666 -19.90986 -19.24754 -18.12448 -17.74343 -17.51082 -17.08774 -16.68101 -16.55921 -16.37158 -15.98161 -15.83275 -15.76887 -15.18499 -14.85942 -14.74048 -14.61571 -14.35640 -14.29816 -14.00855 -13.65643 -13.43145 -13.34580 -13.00890 -12.85490 -12.60271 -12.57503 -12.49179 -12.08512 -12.03474 -11.99338 -11.80555 -11.75335 -11.58945 -11.20792 -11.05511 -10.99017 -9.91010 -9.61302 -9.26355 -9.09074 -7.99462 -5.31549 -0.49057 0.29086 0.82193 1.32051 1.38120 1.40470 1.48795 1.73537 2.02832 2.50502 2.51355 2.71403 3.33128 3.49023 3.56393 3.74155 3.81192 3.89673 4.02373 4.07130 4.15334 4.18949 4.27692 4.28862 4.35999 4.49486 4.60078 4.60552 4.68584 4.70797 4.77002 4.78410 4.85876 4.93051 5.03084 5.07832 5.20103 5.29436 5.57457 5.79946 6.15278 6.17130 6.26040 6.28963 6.99778 7.10782 7.86334 8.07510 9.22312 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.003338 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.075905 B = 8386.784354 C = 8812.868231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.321 6.321 3 C 0.180 3.820 4 C -0.218 4.218 5 C -0.180 4.180 6 S 0.268 5.732 7 C -0.378 4.378 8 C 0.595 3.405 9 O -0.578 6.578 10 N -0.614 5.614 11 C 0.058 3.942 12 C 0.046 3.954 13 O -0.380 6.380 14 C 0.093 3.907 15 H 0.077 0.923 16 C 0.179 3.821 17 H 0.059 0.941 18 C -0.147 4.147 19 N -0.743 5.743 20 C -0.223 4.223 21 H 0.059 0.941 22 C -0.063 4.063 23 N -0.985 5.985 24 Si 0.947 3.053 25 H -0.282 1.282 26 H -0.295 1.295 27 H -0.250 1.250 28 C 0.093 3.907 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.215 0.785 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.139 0.861 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.368 0.632 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.372 17.448 -7.106 34.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.119 3.881 4 C -0.250 4.250 5 C -0.318 4.318 6 S 0.533 5.467 7 C -0.497 4.497 8 C 0.386 3.614 9 O -0.460 6.460 10 N -0.347 5.347 11 C -0.065 4.065 12 C -0.031 4.031 13 O -0.298 6.298 14 C 0.033 3.967 15 H 0.095 0.905 16 C 0.070 3.930 17 H 0.077 0.923 18 C -0.207 4.207 19 N -0.387 5.387 20 C -0.354 4.354 21 H 0.077 0.923 22 C -0.254 4.254 23 N -0.636 5.636 24 Si 0.775 3.225 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.175 1.175 28 C -0.030 4.030 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.197 0.803 33 H 0.232 0.768 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.202 0.798 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.788 17.415 -6.753 33.482 hybrid contribution -1.041 -0.343 0.696 1.298 sum -28.828 17.072 -6.057 34.048 Atomic orbital electron populations 1.23475 0.75507 1.05672 1.03121 1.86197 1.24102 1.25758 1.87273 1.18641 0.89943 0.86485 0.93075 1.20217 1.03575 0.89443 1.11789 1.25669 0.98439 1.05293 1.02398 1.83198 1.04179 0.91324 1.67957 1.22555 0.95437 1.00313 1.31380 1.16107 0.80563 0.85776 0.78941 1.90807 1.76637 1.34541 1.44015 1.48181 1.19276 1.26308 1.40944 1.22996 1.04520 0.88789 0.90197 1.23207 0.90100 0.94273 0.95514 1.88025 1.38107 1.34845 1.68852 1.22591 0.97728 0.87543 0.88825 0.90502 1.20449 0.85454 0.93277 0.93771 0.92270 1.22118 1.00659 1.01033 0.96896 1.42705 1.24415 1.04699 1.66888 1.19039 0.99342 0.91513 1.25472 0.92303 1.25410 0.97026 1.02152 1.00851 1.69877 1.13927 1.36163 1.43641 0.85506 0.76661 0.81588 0.78735 1.20893 1.22219 1.17490 1.22110 0.89809 0.92435 0.98692 0.90948 0.90296 0.87181 0.80315 0.76773 0.86356 0.89643 0.91979 0.84338 0.92572 0.94516 0.91312 0.79848 0.93486 0.90303 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.94 113.37 1.13 1.33 16 2 O -0.32 -7.94 10.05 -89.60 -0.90 -8.84 16 3 C 0.18 3.99 6.68 21.99 0.15 4.14 16 4 C -0.22 -2.73 9.17 21.17 0.19 -2.53 16 5 C -0.18 -1.65 10.90 66.77 0.73 -0.92 16 6 S 0.27 4.02 20.00 -56.49 -1.13 2.89 16 7 C -0.38 -9.67 5.20 22.90 0.12 -9.55 16 8 C 0.59 20.36 7.27 85.10 0.62 20.98 16 9 O -0.58 -25.18 16.15 -3.09 -0.05 -25.23 16 10 N -0.61 -19.07 3.02 -827.82 -2.50 -21.57 16 11 C 0.06 1.26 5.66 86.35 0.49 1.75 16 12 C 0.05 0.96 6.98 72.08 0.50 1.47 16 13 O -0.38 -11.52 9.24 -148.98 -1.38 -12.90 16 14 C 0.09 3.08 2.57 30.69 0.08 3.16 16 15 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 16 C 0.18 7.08 2.80 44.99 0.13 7.21 16 17 H 0.06 2.45 8.08 -2.39 -0.02 2.43 16 18 C -0.15 -5.27 9.30 71.98 0.67 -4.60 16 19 N -0.74 -35.72 4.05 -322.95 -1.31 -37.03 16 20 C -0.22 -12.97 10.41 84.03 0.87 -12.10 16 21 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 22 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 23 N -0.99 -64.80 13.97 21.65 0.30 -64.50 16 24 Si 0.95 47.09 27.73 68.60 1.90 49.00 16 25 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 27 H -0.25 -11.38 6.52 99.48 0.65 -10.73 16 28 C 0.09 3.39 5.84 86.35 0.50 3.89 16 29 H 0.07 0.64 7.88 -2.38 -0.02 0.62 16 30 H 0.08 0.57 7.88 -2.39 -0.02 0.55 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.18 1.07 6.99 -2.91 -0.02 1.05 16 33 H 0.22 0.19 8.06 -2.91 -0.02 0.17 16 34 H 0.12 1.97 4.81 -9.85 -0.05 1.92 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 2.01 7.57 -2.39 -0.02 1.99 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.37 17.38 4.94 -92.71 -0.46 16.92 16 42 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.08 3.22 7.06 -2.38 -0.02 3.20 16 44 H 0.07 2.72 6.94 -2.39 -0.02 2.71 16 Total: -1.00 -84.95 366.73 2.06 -82.89 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.47 Total: 24.43 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.65 Total: 10.85 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -3.50 Total: -123.10 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -2.33 Total: -46.97 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.90 Total: 49.00 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.13 Total: 2.89 kcal Total: -84.95 2.06 -82.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485650267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.532 kcal (2) G-P(sol) polarization free energy of solvation -84.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds