Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35681 * 117.00077 * 2 1 4 4 C 1.38698 * 120.13312 * 0.02562 * 3 2 1 5 5 C 1.38056 * 120.09547 * 179.97438 * 4 3 2 6 6 C 1.38637 * 120.37879 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.86244 * 180.02562 * 6 5 4 8 8 C 1.37899 * 120.27315 * 359.77806 * 6 5 4 9 9 C 1.39705 * 119.89322 * 0.44963 * 8 6 5 10 10 C 1.47537 * 120.18771 * 179.81022 * 9 8 6 11 11 O 1.21581 * 120.00320 * 179.72547 * 10 9 8 12 12 N 1.34779 * 119.99638 * 359.71988 * 10 9 8 13 13 C 1.46496 * 119.99965 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47464 * 325.00834 * 13 12 10 15 15 C 1.53006 * 109.46995 * 85.00573 * 13 12 10 16 16 C 1.52999 * 109.47487 * 205.00106 * 13 12 10 17 17 C 1.53003 * 109.47015 * 64.99979 * 16 13 12 18 18 C 1.52993 * 109.47495 * 180.02562 * 17 16 13 19 19 N 1.46504 * 109.47302 * 179.97438 * 18 17 16 20 20 C 1.36935 * 119.99681 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00611 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99639 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00105 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47277 * 120.00024 * 24 22 20 27 27 H 1.48507 * 109.46633 * 239.99563 * 24 22 20 28 28 H 1.09004 * 109.47315 * 299.99501 * 1 2 3 29 29 H 1.08999 * 109.47308 * 60.00115 * 1 2 3 30 30 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.95335 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.80449 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.05035 * 180.23753 * 8 6 5 34 34 H 0.97003 * 120.00044 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.47002 * 299.99701 * 15 13 12 36 36 H 1.08993 * 109.46955 * 60.00138 * 15 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 15 13 12 38 38 H 1.08994 * 109.47465 * 185.00255 * 16 13 12 39 39 H 1.08998 * 109.47565 * 305.00687 * 16 13 12 40 40 H 1.08999 * 109.47145 * 300.00897 * 17 16 13 41 41 H 1.09000 * 109.46883 * 59.99966 * 17 16 13 42 42 H 1.08999 * 109.47626 * 300.00565 * 18 17 16 43 43 H 1.09000 * 109.47115 * 60.00069 * 18 17 16 44 44 H 0.96995 * 120.00028 * 0.02562 * 19 18 17 45 45 H 0.97004 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9198 3.6036 0.0011 6 6 3.3039 3.6843 0.0005 7 17 4.0791 5.2377 0.0019 8 6 4.0673 2.5359 0.0041 9 6 3.4441 1.2856 -0.0013 10 6 4.2545 0.0528 -0.0017 11 8 3.7087 -1.0336 -0.0014 12 7 5.6000 0.1309 -0.0027 13 6 6.4048 -1.0932 -0.0026 14 1 5.9014 -1.8590 0.5874 15 6 6.5791 -1.5891 -1.4396 16 6 7.7778 -0.8009 0.6059 17 6 7.6128 -0.4249 2.0798 18 6 8.9856 -0.1320 2.6883 19 7 8.8275 0.2286 4.0994 20 6 9.9277 0.5343 4.8553 21 1 10.9118 0.5099 4.4113 22 6 9.7779 0.8754 6.1925 23 7 8.5785 0.9057 6.7336 24 14 11.2786 1.2931 7.2236 25 1 12.5001 1.1865 6.3859 26 1 11.1528 2.6788 7.7422 27 1 11.3758 0.3452 8.3627 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2137 2.3190 0.0005 32 1 1.3292 4.5077 0.0019 33 1 5.1452 2.6031 0.0075 34 1 6.0355 0.9977 -0.0027 35 1 5.6010 -1.7974 -1.8731 36 1 7.0825 -0.8233 -2.0296 37 1 7.1783 -2.4996 -1.4395 38 1 8.4071 -1.6872 0.5253 39 1 8.2442 0.0258 0.0702 40 1 6.9834 0.4613 2.1604 41 1 7.1464 -1.2516 2.6156 42 1 9.6154 -1.0180 2.6077 43 1 9.4516 0.6949 2.1524 44 1 7.9437 0.2502 4.4984 45 1 8.4738 1.1444 7.6680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485749049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -53.805600 kcal Electronic energy + Delta-G solvation = -26739.115664 eV Core-core repulsion = 22782.863195 eV Total energy + Delta-G solvation = -3956.252469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93176 -39.35327 -37.99579 -36.68792 -36.38595 -34.79092 -32.84398 -31.95455 -30.62101 -30.32382 -29.30594 -27.60226 -25.67159 -24.55354 -23.01952 -22.52865 -21.27457 -20.76022 -20.48746 -18.80460 -17.57220 -16.98555 -16.94192 -16.16924 -16.01446 -15.75942 -15.14939 -14.87457 -14.64042 -14.46695 -14.13511 -13.82456 -13.78505 -13.55593 -13.38993 -12.96863 -12.91453 -12.65625 -12.37090 -12.18274 -12.13776 -12.05616 -11.69734 -11.28738 -11.26167 -11.10876 -11.00368 -10.84418 -10.77015 -10.42251 -10.36231 -9.95835 -9.84913 -9.65688 -9.58132 -9.04893 -8.83682 -8.50381 -6.87643 -5.72634 -3.01200 0.41962 0.80184 1.83219 2.63368 2.87656 3.08105 3.45528 3.48105 3.50753 3.53333 4.22519 4.24635 4.54987 4.60175 4.72403 4.79012 4.81702 4.84042 4.98464 5.08646 5.17342 5.19608 5.26271 5.36080 5.46795 5.60209 5.61388 5.67163 5.67867 5.72369 5.83770 6.01078 6.02497 6.11482 6.16484 6.25382 6.40060 6.45200 6.53343 6.90937 6.93774 6.94552 7.48499 7.73600 8.22570 8.46378 9.57217 10.16676 10.50957 11.50410 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.002691 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.334526 B =10400.647988 C =11707.088521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.275 6.275 3 C 0.190 3.810 4 C -0.209 4.209 5 C -0.044 4.044 6 C -0.082 4.082 7 Cl -0.062 7.062 8 C -0.036 4.036 9 C -0.159 4.159 10 C 0.563 3.437 11 O -0.518 6.518 12 N -0.719 5.719 13 C 0.143 3.857 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.126 4.126 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.398 0.602 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.266 3.356 -20.847 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.186 6.186 3 C 0.141 3.859 4 C -0.228 4.228 5 C -0.062 4.062 6 C -0.109 4.109 7 Cl -0.034 7.034 8 C -0.055 4.055 9 C -0.163 4.163 10 C 0.350 3.650 11 O -0.394 6.394 12 N -0.372 5.372 13 C 0.039 3.961 14 H 0.108 0.892 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.164 4.164 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.321 2.494 -20.799 27.182 hybrid contribution 0.542 1.125 0.866 1.520 sum -16.779 3.619 -19.933 26.305 Atomic orbital electron populations 1.23221 0.78447 1.04650 1.01304 1.86411 1.20975 1.24985 1.86191 1.19095 0.90957 0.85126 0.90739 1.21200 1.00714 0.91202 1.09707 1.21003 0.92412 0.98233 0.94598 1.20617 0.92944 0.87114 1.10241 1.98391 1.81001 1.26786 1.97177 1.21092 1.00443 0.89419 0.94544 1.19318 0.90981 0.93716 1.12258 1.17780 0.82107 0.88256 0.76886 1.90821 1.71560 1.28338 1.48653 1.46008 1.05638 1.10083 1.75463 1.21047 0.91583 0.86825 0.96642 0.89186 1.22173 1.02151 1.01302 0.96390 1.21856 0.95113 1.02597 0.96576 1.21737 0.99051 1.01641 0.93973 1.20646 0.93630 0.96675 0.86501 1.42395 1.07326 1.82797 1.05358 1.19285 0.87706 1.38101 0.91829 0.91181 1.24753 0.96573 1.02773 0.97066 1.69677 1.20378 1.55363 1.12804 0.86122 0.82078 0.77646 0.80398 1.20569 1.21879 1.21881 0.92325 0.92473 0.87721 0.83834 0.84169 0.83780 0.76674 0.92281 0.92553 0.91531 0.90197 0.91424 0.92071 0.91910 0.96512 0.96581 0.78328 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.28 -3.28 8.57 -40.63 -0.35 -3.62 16 3 C 0.19 2.13 6.70 -38.70 -0.26 1.87 16 4 C -0.21 -1.73 9.03 -39.48 -0.36 -2.08 16 5 C -0.04 -0.35 9.81 -39.50 -0.39 -0.74 16 6 C -0.08 -0.78 6.31 -39.56 -0.25 -1.03 16 7 Cl -0.06 -0.59 28.94 -51.86 -1.50 -2.09 16 8 C -0.04 -0.36 9.31 -39.16 -0.36 -0.73 16 9 C -0.16 -1.90 5.89 -104.85 -0.62 -2.52 16 10 C 0.56 7.79 7.73 -12.47 -0.10 7.70 16 11 O -0.52 -8.83 14.82 -16.59 -0.25 -9.08 16 12 N -0.72 -8.45 4.48 -54.85 -0.25 -8.69 16 13 C 0.14 1.70 2.57 -67.93 -0.17 1.52 16 14 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 15 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 16 C -0.12 -1.48 4.75 -26.73 -0.13 -1.61 16 17 C -0.13 -2.03 5.22 -26.73 -0.14 -2.17 16 18 C 0.15 3.11 6.26 -4.04 -0.03 3.09 16 19 N -0.73 -19.26 5.60 -59.91 -0.34 -19.59 16 20 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 24 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 1.24 6.40 -52.49 -0.34 0.90 16 34 H 0.40 3.91 6.63 -40.82 -0.27 3.64 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 45 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -35.29 389.83 -9.42 -44.70 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.62 Total: 7.37 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.70 Total: -4.45 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.14 Total: -56.48 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.59 Total: -12.70 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.29 -9.42 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485749049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.103 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds