Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35681 * 117.00077 * 2 1 4 4 C 1.38698 * 120.13312 * 0.02562 * 3 2 1 5 5 C 1.38056 * 120.09547 * 179.97438 * 4 3 2 6 6 C 1.38637 * 120.37879 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.86244 * 180.02562 * 6 5 4 8 8 C 1.37899 * 120.27315 * 359.77806 * 6 5 4 9 9 C 1.39705 * 119.89322 * 0.44963 * 8 6 5 10 10 C 1.47537 * 120.18771 * 179.81022 * 9 8 6 11 11 O 1.21581 * 120.00320 * 179.72547 * 10 9 8 12 12 N 1.34779 * 119.99638 * 359.71988 * 10 9 8 13 13 C 1.46496 * 119.99965 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47464 * 325.00834 * 13 12 10 15 15 C 1.53006 * 109.46995 * 85.00573 * 13 12 10 16 16 C 1.52999 * 109.47487 * 205.00106 * 13 12 10 17 17 C 1.53003 * 109.47015 * 64.99979 * 16 13 12 18 18 C 1.52993 * 109.47495 * 180.02562 * 17 16 13 19 19 N 1.46504 * 109.47302 * 179.97438 * 18 17 16 20 20 C 1.36935 * 119.99681 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00611 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99639 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00105 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47277 * 120.00024 * 24 22 20 27 27 H 1.48507 * 109.46633 * 239.99563 * 24 22 20 28 28 H 1.09004 * 109.47315 * 299.99501 * 1 2 3 29 29 H 1.08999 * 109.47308 * 60.00115 * 1 2 3 30 30 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.95335 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.80449 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.05035 * 180.23753 * 8 6 5 34 34 H 0.97003 * 120.00044 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.47002 * 299.99701 * 15 13 12 36 36 H 1.08993 * 109.46955 * 60.00138 * 15 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 15 13 12 38 38 H 1.08994 * 109.47465 * 185.00255 * 16 13 12 39 39 H 1.08998 * 109.47565 * 305.00687 * 16 13 12 40 40 H 1.08999 * 109.47145 * 300.00897 * 17 16 13 41 41 H 1.09000 * 109.46883 * 59.99966 * 17 16 13 42 42 H 1.08999 * 109.47626 * 300.00565 * 18 17 16 43 43 H 1.09000 * 109.47115 * 60.00069 * 18 17 16 44 44 H 0.96995 * 120.00028 * 0.02562 * 19 18 17 45 45 H 0.97004 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9198 3.6036 0.0011 6 6 3.3039 3.6843 0.0005 7 17 4.0791 5.2377 0.0019 8 6 4.0673 2.5359 0.0041 9 6 3.4441 1.2856 -0.0013 10 6 4.2545 0.0528 -0.0017 11 8 3.7087 -1.0336 -0.0014 12 7 5.6000 0.1309 -0.0027 13 6 6.4048 -1.0932 -0.0026 14 1 5.9014 -1.8590 0.5874 15 6 6.5791 -1.5891 -1.4396 16 6 7.7778 -0.8009 0.6059 17 6 7.6128 -0.4249 2.0798 18 6 8.9856 -0.1320 2.6883 19 7 8.8275 0.2286 4.0994 20 6 9.9277 0.5343 4.8553 21 1 10.9118 0.5099 4.4113 22 6 9.7779 0.8754 6.1925 23 7 8.5785 0.9057 6.7336 24 14 11.2786 1.2931 7.2236 25 1 12.5001 1.1865 6.3859 26 1 11.1528 2.6788 7.7422 27 1 11.3758 0.3452 8.3627 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2137 2.3190 0.0005 32 1 1.3292 4.5077 0.0019 33 1 5.1452 2.6031 0.0075 34 1 6.0355 0.9977 -0.0027 35 1 5.6010 -1.7974 -1.8731 36 1 7.0825 -0.8233 -2.0296 37 1 7.1783 -2.4996 -1.4395 38 1 8.4071 -1.6872 0.5253 39 1 8.2442 0.0258 0.0702 40 1 6.9834 0.4613 2.1604 41 1 7.1464 -1.2516 2.6156 42 1 9.6154 -1.0180 2.6077 43 1 9.4516 0.6949 2.1524 44 1 7.9437 0.2502 4.4984 45 1 8.4738 1.1444 7.6680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485749049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -75.729583 kcal Electronic energy + Delta-G solvation = -26740.066360 eV Core-core repulsion = 22782.863195 eV Total energy + Delta-G solvation = -3957.203164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74830 -40.28587 -38.73217 -37.90114 -37.15520 -36.48192 -34.25128 -33.23769 -31.87871 -31.04022 -30.67396 -28.18119 -27.23383 -25.50181 -24.67191 -23.32551 -22.47551 -22.05315 -21.48468 -19.59192 -19.11710 -18.38213 -17.78477 -16.97409 -16.84857 -16.73166 -16.45967 -15.94393 -15.91188 -15.66439 -15.35889 -15.23113 -14.85742 -14.67523 -14.46210 -14.28584 -13.81618 -13.57504 -13.42436 -13.17461 -13.03835 -12.99959 -12.82334 -12.80314 -12.38344 -12.33438 -12.21139 -12.04784 -12.00222 -11.85791 -11.70653 -11.68329 -11.48832 -10.94388 -10.89385 -10.35196 -10.03699 -9.25235 -9.00522 -7.95563 -5.25024 -0.34517 0.07361 1.10008 1.46839 1.48181 1.58403 1.75825 2.14164 2.25200 2.55763 2.62632 3.38217 3.49258 3.57995 3.67516 3.86283 3.98790 4.04905 4.11744 4.27023 4.30069 4.30567 4.38072 4.41133 4.56302 4.59076 4.61669 4.69031 4.73917 4.83415 4.87062 4.93223 4.98356 5.02442 5.03996 5.14079 5.32436 5.35031 5.37887 5.43525 5.50861 5.59127 6.26857 6.27029 6.54341 7.23497 7.32279 8.09485 8.31602 9.28481 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.002691 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.334526 B =10400.647988 C =11707.088521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.175 3.825 4 C -0.200 4.200 5 C -0.035 4.035 6 C -0.092 4.092 7 Cl -0.063 7.063 8 C -0.037 4.037 9 C -0.186 4.186 10 C 0.558 3.442 11 O -0.560 6.560 12 N -0.712 5.712 13 C 0.145 3.855 14 H 0.064 0.936 15 C -0.153 4.153 16 C -0.109 4.109 17 C -0.114 4.114 18 C 0.151 3.849 19 N -0.751 5.751 20 C -0.245 4.245 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.976 3.024 25 H -0.264 1.264 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.408 0.592 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.021 0.979 43 H 0.026 0.974 44 H 0.371 0.629 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.992 4.572 -22.094 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.221 6.221 3 C 0.126 3.874 4 C -0.219 4.219 5 C -0.054 4.054 6 C -0.119 4.119 7 Cl -0.034 7.034 8 C -0.057 4.057 9 C -0.190 4.190 10 C 0.347 3.653 11 O -0.440 6.440 12 N -0.365 5.365 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.211 4.211 16 C -0.147 4.147 17 C -0.152 4.152 18 C 0.025 3.975 19 N -0.394 5.394 20 C -0.377 4.377 21 H 0.095 0.905 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.804 3.196 25 H -0.188 1.188 26 H -0.219 1.219 27 H -0.221 1.221 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.193 0.807 32 H 0.187 0.813 33 H 0.171 0.829 34 H 0.245 0.755 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.202 0.798 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.009 3.721 -22.095 28.131 hybrid contribution 0.400 0.747 1.204 1.472 sum -16.609 4.468 -20.892 27.061 Atomic orbital electron populations 1.23509 0.76224 1.05740 1.03013 1.86366 1.23506 1.25898 1.86309 1.19394 0.91045 0.85954 0.91044 1.21507 1.02084 0.90059 1.08238 1.21371 0.92022 0.99263 0.92698 1.20759 0.93682 0.86820 1.10589 1.98391 1.81163 1.26623 1.97203 1.21157 1.01027 0.89100 0.94369 1.19315 0.91605 0.93406 1.14680 1.18156 0.82625 0.88481 0.76082 1.90784 1.72368 1.29923 1.50894 1.45983 1.05251 1.10600 1.74645 1.20989 0.91065 0.86365 0.97518 0.91739 1.22090 1.01694 1.02431 0.94927 1.21759 0.95452 1.03973 0.93535 1.21597 0.96420 1.00784 0.96363 1.20853 0.96028 0.96803 0.83865 1.42675 1.06203 1.82925 1.07562 1.19711 0.88672 1.36923 0.92373 0.90453 1.25631 0.99485 1.03538 0.98475 1.69841 1.22604 1.56960 1.12861 0.85041 0.79130 0.76904 0.78499 1.18812 1.21902 1.22064 0.90890 0.90321 0.87160 0.80742 0.81333 0.82934 0.75505 0.93907 0.90856 0.90115 0.88844 0.89269 0.92595 0.93633 0.96139 0.95555 0.79759 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.31 -7.49 8.57 -69.07 -0.59 -8.08 16 3 C 0.17 3.88 6.70 22.84 0.15 4.03 16 4 C -0.20 -2.92 9.03 22.34 0.20 -2.72 16 5 C -0.03 -0.48 9.81 22.32 0.22 -0.27 16 6 C -0.09 -1.63 6.31 22.28 0.14 -1.49 16 7 Cl -0.06 -1.10 28.94 -2.72 -0.08 -1.18 16 8 C -0.04 -0.74 9.31 22.54 0.21 -0.53 16 9 C -0.19 -4.53 5.89 -20.01 -0.12 -4.65 16 10 C 0.56 16.06 7.73 86.70 0.67 16.73 16 11 O -0.56 -20.20 14.82 16.96 0.25 -19.95 16 12 N -0.71 -16.81 4.48 -445.70 -2.00 -18.81 16 13 C 0.14 3.39 2.57 44.99 0.12 3.51 16 14 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 15 C -0.15 -2.97 9.48 71.98 0.68 -2.28 16 16 C -0.11 -2.45 4.75 30.60 0.15 -2.30 16 17 C -0.11 -3.64 5.22 30.59 0.16 -3.48 16 18 C 0.15 6.00 6.26 86.38 0.54 6.54 16 19 N -0.75 -39.59 5.60 -343.46 -1.92 -41.52 16 20 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 24 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 29 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.18 1.34 6.30 -2.91 -0.02 1.32 16 32 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.15 2.56 6.40 -2.91 -0.02 2.54 16 34 H 0.41 7.79 6.63 -92.71 -0.61 7.18 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.84 7.75 -2.39 -0.02 1.82 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 45 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.69 389.83 3.20 -74.49 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.31 Total: 30.05 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 5.54 Total: -3.06 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.64 Total: -121.15 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.34 Total: -28.03 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -77.69 3.20 -74.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485749049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.238 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds