Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 5 5 C 1.34773 * 119.99910 * 275.00232 * 4 2 1 6 6 O 1.21288 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99928 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.47331 * 179.97438 * 7 5 4 9 9 C 1.76196 * 100.00488 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99536 * 0.02562 * 9 8 7 11 11 C 1.38795 * 120.00410 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00135 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99945 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47047 * 90.00210 * 13 11 9 15 15 H 1.48497 * 109.47343 * 210.00296 * 13 11 9 16 16 H 1.48504 * 109.47307 * 330.00275 * 13 11 9 17 17 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 18 18 H 1.09004 * 109.46881 * 174.99844 * 17 2 1 19 19 C 1.53000 * 109.47341 * 295.00521 * 17 2 1 20 20 N 1.46502 * 109.47004 * 55.00263 * 17 2 1 21 21 C 1.34779 * 119.99830 * 154.99864 * 20 17 2 22 22 O 1.21282 * 120.00222 * 359.97438 * 21 20 17 23 23 C 1.50700 * 119.99647 * 180.02562 * 21 20 17 24 24 C 1.50698 * 109.47080 * 179.97438 * 23 21 20 25 25 C 1.34513 * 125.79199 * 89.99610 * 24 23 21 26 26 C 1.41380 * 106.84654 * 180.02562 * 25 24 23 27 27 C 1.34515 * 106.83860 * 0.02562 * 26 25 24 28 28 O 1.34306 * 125.79085 * 269.69570 * 24 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 0.96995 * 120.00293 * 94.99410 * 4 2 1 33 33 H 1.09000 * 109.47712 * 299.99892 * 7 5 4 34 34 H 1.08995 * 109.47183 * 60.00106 * 7 5 4 35 35 H 0.97002 * 120.00253 * 180.02562 * 12 11 9 36 36 H 1.08994 * 109.47281 * 59.99487 * 19 17 2 37 37 H 1.09004 * 109.47031 * 180.02562 * 19 17 2 38 38 H 1.09002 * 109.46818 * 300.00038 * 19 17 2 39 39 H 0.97001 * 120.00062 * 334.99906 * 20 17 2 40 40 H 1.09006 * 109.47178 * 299.99768 * 23 21 20 41 41 H 1.09003 * 109.47372 * 60.00192 * 23 21 20 42 42 H 1.08009 * 126.57833 * 359.96653 * 25 24 23 43 43 H 1.07996 * 126.58172 * 179.97438 * 26 25 24 44 44 H 1.07998 * 125.79166 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6488 -0.7288 3.5877 8 16 2.7105 0.4344 4.9731 9 6 3.3135 -0.6307 6.2405 10 1 3.5228 -1.6672 6.0205 11 6 3.5195 -0.1379 7.5216 12 7 3.9705 -0.9335 8.4683 13 14 3.1582 1.6549 7.9019 14 1 1.7473 1.7925 8.3441 15 1 4.0634 2.1241 8.9816 16 1 3.3768 2.4735 6.6822 17 6 2.0401 -0.7213 -1.2492 18 1 3.1264 -0.6443 -1.2951 19 6 1.6352 -2.1955 -1.1880 20 7 1.4559 -0.1037 -2.4423 21 6 2.0914 -0.1939 -3.6275 22 8 3.1470 -0.7859 -3.7061 23 6 1.4908 0.4420 -4.8547 24 6 2.3913 0.1986 -6.0383 25 6 2.3257 -0.8538 -6.8734 26 6 3.3505 -0.6807 -7.8320 27 6 3.9814 0.4669 -7.5250 28 8 3.3918 0.9987 -6.4417 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 1.9759 -1.5506 3.8326 34 1 3.6479 -1.1213 3.3987 35 1 4.1142 -0.5892 9.3636 36 1 0.5490 -2.2724 -1.1420 37 1 1.9990 -2.7094 -2.0777 38 1 2.0698 -2.6550 -0.3002 39 1 0.6119 0.3701 -2.3794 40 1 0.5108 0.0054 -5.0475 41 1 1.3853 1.5148 -4.6935 42 1 1.6253 -1.6743 -6.8212 43 1 3.5827 -1.3432 -8.6526 44 1 4.8164 0.8919 -8.0621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486655849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = -59.565480 kcal Electronic energy + Delta-G solvation = -26064.432790 eV Core-core repulsion = 22109.974261 eV Total energy + Delta-G solvation = -3954.458530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88479 -40.48320 -39.40891 -37.10867 -34.18440 -33.52963 -32.63659 -32.45066 -31.30886 -29.85649 -28.65007 -27.46134 -25.63860 -24.95015 -22.16115 -22.06308 -20.82000 -20.53382 -20.05393 -18.28765 -17.74397 -17.65282 -16.71402 -16.31374 -16.19730 -15.73353 -15.60027 -15.24850 -14.97070 -14.87838 -14.58422 -14.10031 -13.87910 -13.60084 -13.38641 -13.16614 -13.14870 -13.04575 -12.88710 -12.79358 -12.53743 -12.20221 -12.13434 -12.05556 -11.32668 -11.27636 -11.16692 -11.02169 -10.63003 -10.35319 -10.20837 -9.87627 -9.60637 -9.51271 -9.12475 -9.01000 -8.80341 -8.52413 -6.93696 -6.30081 -4.02167 1.35191 2.20414 2.24297 2.50247 2.69122 2.87910 2.94527 3.30787 3.34671 3.49175 3.64048 4.10621 4.22864 4.31778 4.43809 4.53837 4.59856 4.67576 4.70614 4.81972 4.82674 4.87390 5.05947 5.08938 5.12246 5.19289 5.37125 5.41664 5.47017 5.57267 5.59367 5.70597 5.73654 5.75177 5.83246 5.98552 6.03235 6.09019 6.16651 6.46292 6.79705 7.02396 7.51769 7.79296 7.92867 8.40420 8.41849 9.15958 10.79109 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.001733 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.741780 B =16151.540121 C =16240.455904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.730 5.730 5 C 0.534 3.466 6 O -0.517 6.517 7 C -0.125 4.125 8 S -0.141 6.141 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.096 3.904 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C 0.136 3.864 18 H 0.096 0.904 19 C -0.168 4.168 20 N -0.722 5.722 21 C 0.515 3.485 22 O -0.524 6.524 23 C -0.061 4.061 24 C 0.003 3.997 25 C -0.195 4.195 26 C -0.214 4.214 27 C -0.036 4.036 28 O -0.172 6.172 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.402 0.598 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 -0.330 -32.185 33.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.386 5.386 5 C 0.320 3.680 6 O -0.391 6.391 7 C -0.276 4.276 8 S 0.085 5.915 9 C -0.670 4.670 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.516 5.516 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C 0.031 3.969 18 H 0.114 0.886 19 C -0.226 4.226 20 N -0.377 5.377 21 C 0.300 3.700 22 O -0.399 6.399 23 C -0.101 4.101 24 C -0.048 4.048 25 C -0.214 4.214 26 C -0.233 4.233 27 C -0.104 4.104 28 O -0.068 6.068 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.239 0.761 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.497 1.451 -31.801 32.705 hybrid contribution -0.009 -1.245 0.236 1.267 sum -7.506 0.207 -31.565 32.446 Atomic orbital electron populations 1.22270 0.95110 1.02623 1.02631 1.20983 0.94475 0.97750 0.83622 0.88758 1.46040 1.69416 1.14124 1.09065 1.20303 0.76736 0.87202 0.83781 1.90700 1.48331 1.15684 1.84430 1.23284 1.04582 1.03508 0.96179 1.84779 1.87162 1.16467 1.03055 1.22316 1.50671 0.98707 0.95275 0.89363 1.24712 0.93350 0.98282 0.94956 1.69940 1.43367 1.35797 1.02521 0.86733 0.79294 0.85234 0.80563 1.19226 1.19931 1.15942 1.21118 0.99684 0.92673 0.83421 0.88600 1.22249 1.02255 0.95278 1.02817 1.46026 1.26207 1.57573 1.07858 1.20407 0.85040 0.80290 0.84230 1.90773 1.21998 1.41834 1.85264 1.20081 0.97539 1.04244 0.88246 1.21420 0.92519 0.92607 0.98253 1.21525 1.02629 0.99866 0.97391 1.21811 0.99125 0.99484 1.02930 1.24028 1.00495 0.96250 0.89591 1.83994 1.38533 1.45456 1.38828 0.92130 0.91735 0.91051 0.76374 0.88412 0.88365 0.91932 0.91613 0.91610 0.91333 0.76125 0.85748 0.86806 0.83600 0.83432 0.78064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.00 37.16 0.33 -1.04 16 2 C 0.14 1.35 2.62 -67.93 -0.18 1.17 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.73 -8.53 4.99 -53.80 -0.27 -8.80 16 5 C 0.53 8.96 7.81 -10.99 -0.09 8.87 16 6 O -0.52 -10.57 15.53 5.55 0.09 -10.48 16 7 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 8 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 9 C -0.52 -14.93 10.04 30.94 0.31 -14.61 16 10 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 11 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 12 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 13 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 17 C 0.14 1.15 2.62 -67.93 -0.18 0.97 16 18 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 19 C -0.17 -1.24 9.00 37.16 0.33 -0.91 16 20 N -0.72 -4.85 4.99 -53.80 -0.27 -5.12 16 21 C 0.51 4.49 7.79 -10.98 -0.09 4.40 16 22 O -0.52 -7.04 15.70 5.56 0.09 -6.95 16 23 C -0.06 -0.35 6.23 -29.04 -0.18 -0.53 16 24 C 0.00 0.02 5.81 -35.63 -0.21 -0.18 16 25 C -0.19 -1.67 10.81 -39.70 -0.43 -2.10 16 26 C -0.21 -1.71 10.91 -39.70 -0.43 -2.15 16 27 C -0.04 -0.28 12.09 29.42 0.36 0.07 16 28 O -0.17 -1.74 10.65 5.69 0.06 -1.68 16 29 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 30 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 3.71 6.58 -40.82 -0.27 3.44 16 33 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 34 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.47 6.29 -51.93 -0.33 0.14 16 39 H 0.40 1.60 6.58 -40.82 -0.27 1.33 16 40 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -37.96 382.83 -6.82 -44.78 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.04 Total: 2.17 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.32 Total: -5.46 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.24 Total: -39.57 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.23 Total: -19.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.96 -6.82 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486655849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.783 kcal (2) G-P(sol) polarization free energy of solvation -37.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds