Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46334 * 2 1 4 4 C 1.52995 * 109.46885 * 119.99788 * 2 1 3 5 5 C 1.53006 * 109.46871 * 185.00580 * 4 2 1 6 6 C 1.53003 * 109.47094 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47109 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00174 * 180.02562 * 7 6 5 9 9 O 1.21618 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.47376 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.47019 * 127.19544 * 180.28123 * 10 8 7 12 12 C 1.34177 * 105.95809 * 180.17417 * 11 10 8 13 13 O 1.34214 * 109.12112 * 359.60541 * 12 11 10 14 14 C 1.33655 * 110.90867 * 0.26473 * 13 12 11 15 15 N 1.46492 * 109.47181 * 240.00117 * 2 1 3 16 16 C 1.34782 * 120.00279 * 85.00034 * 15 2 1 17 17 O 1.21279 * 119.99466 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99979 * 180.02562 * 16 15 2 19 19 S 1.81002 * 109.47020 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00079 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99983 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00292 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99534 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00227 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47030 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47275 * 119.99637 * 24 22 20 27 27 H 1.48501 * 109.47155 * 240.00285 * 24 22 20 28 28 H 1.09003 * 109.47354 * 60.00444 * 1 2 3 29 29 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47533 * 299.99878 * 1 2 3 31 31 H 1.08994 * 109.47381 * 65.00634 * 4 2 1 32 32 H 1.09004 * 109.47164 * 304.99716 * 4 2 1 33 33 H 1.08994 * 109.47074 * 59.99866 * 5 4 2 34 34 H 1.08996 * 109.46668 * 299.99806 * 5 4 2 35 35 H 1.09003 * 109.46665 * 59.99986 * 6 5 4 36 36 H 1.08996 * 109.46757 * 299.99766 * 6 5 4 37 37 H 0.97003 * 120.00150 * 359.97438 * 7 6 5 38 38 H 1.08005 * 127.02536 * 0.08201 * 11 10 8 39 39 H 1.08002 * 125.44341 * 179.87398 * 12 11 10 40 40 H 1.08001 * 125.79936 * 179.97438 * 14 13 12 41 41 H 0.97001 * 120.00219 * 264.99341 * 15 2 1 42 42 H 1.09000 * 109.46712 * 299.99702 * 18 16 15 43 43 H 1.08997 * 109.47380 * 59.99766 * 18 16 15 44 44 H 0.96998 * 119.99930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3338 2.5634 7 7 5.5348 -1.2308 2.6248 8 6 6.2078 -1.7960 3.6466 9 8 5.6030 -2.3911 4.5179 10 6 7.6767 -1.6929 3.7082 11 6 8.5643 -2.2500 4.7393 12 6 9.8097 -1.9022 4.3811 13 8 9.7588 -1.2018 3.2373 14 6 8.4973 -1.0647 2.8177 15 7 2.0183 -0.6905 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4116 18 6 2.6489 -0.7288 -3.5877 19 16 2.7092 0.4341 -4.9734 20 6 3.3125 -0.6310 -6.2407 21 1 3.5227 -1.6673 -6.0205 22 6 3.5178 -0.1384 -7.5220 23 7 3.2613 1.1244 -7.7905 24 14 4.1567 -1.2679 -8.8657 25 1 4.3641 -2.6296 -8.3106 26 1 3.1685 -1.3291 -9.9723 27 1 5.4463 -0.7428 -9.3820 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7517 -1.7714 1.2056 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4371 1.3574 34 1 3.9994 -1.0726 0.4261 35 1 3.7864 -2.3841 2.5201 36 1 3.6401 -0.8738 3.4508 37 1 6.0173 -0.7565 1.9297 38 1 8.2733 -2.8211 5.6085 39 1 10.7099 -2.1502 4.9239 40 1 8.1812 -0.5446 1.9255 41 1 2.2491 -1.6317 -1.1526 42 1 3.6480 -1.1213 -3.3985 43 1 1.9760 -1.5506 -3.8325 44 1 3.4050 1.4688 -8.6858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487473982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -76.538544 kcal Electronic energy + Delta-G solvation = -25460.614766 eV Core-core repulsion = 21505.420229 eV Total energy + Delta-G solvation = -3955.194537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.96745 -39.82319 -39.41712 -36.85153 -35.21243 -33.39637 -32.49544 -32.44137 -31.04454 -30.05030 -28.53345 -26.58759 -25.50819 -23.86996 -22.24944 -21.84011 -21.45564 -20.38930 -20.31807 -18.81959 -17.87139 -16.67921 -16.60146 -16.54990 -16.41350 -15.93825 -15.68823 -15.18757 -14.96412 -14.82995 -14.56470 -14.02839 -13.88611 -13.72875 -13.37769 -13.31561 -13.17354 -12.85415 -12.75078 -12.59449 -12.35829 -11.96281 -11.86115 -11.43695 -11.23049 -11.09391 -11.04468 -10.92606 -10.77085 -10.38697 -10.26406 -9.82783 -9.50236 -9.39867 -9.24755 -9.10337 -8.91551 -8.25788 -6.52674 -6.24447 -3.94913 0.90509 1.64569 2.46813 2.75765 3.00020 3.02032 3.07943 3.19434 3.26528 3.31168 3.70587 4.13068 4.17923 4.21893 4.30451 4.56632 4.61369 4.72995 4.92765 5.06320 5.10889 5.11604 5.18531 5.21701 5.23953 5.35753 5.42237 5.45020 5.52961 5.58690 5.68364 5.74108 5.82611 5.85434 5.86056 6.02084 6.05262 6.11157 6.20266 6.48887 6.66893 7.08917 7.57356 7.70470 7.84081 8.32816 8.60686 9.21171 10.83000 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.002060 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.498996 B =13587.567098 C =15968.490064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.134 4.134 6 C 0.121 3.879 7 N -0.727 5.727 8 C 0.587 3.413 9 O -0.537 6.537 10 C -0.239 4.239 11 C -0.166 4.166 12 C -0.040 4.040 13 O -0.173 6.173 14 C 0.024 3.976 15 N -0.734 5.734 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.160 0.840 39 H 0.210 0.790 40 H 0.212 0.788 41 H 0.396 0.604 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -6.455 24.891 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.172 4.172 6 C -0.003 4.003 7 N -0.379 5.379 8 C 0.374 3.626 9 O -0.415 6.415 10 C -0.243 4.243 11 C -0.186 4.186 12 C -0.106 4.106 13 O -0.068 6.068 14 C -0.046 4.046 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.229 0.771 41 H 0.230 0.770 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.615 -4.657 25.165 26.434 hybrid contribution 0.903 -2.418 -1.065 2.792 sum 7.518 -7.075 24.101 26.219 Atomic orbital electron populations 1.22185 0.95373 1.02052 1.02675 1.20879 0.93995 0.97641 0.83672 0.89372 1.21793 0.94509 1.01678 0.98025 1.21838 0.96478 1.01533 0.97355 1.21424 0.78793 1.01309 0.98732 1.45869 1.08296 1.57188 1.26546 1.17272 0.85462 0.78393 0.81436 1.90795 1.69623 1.42461 1.38632 1.21545 0.94172 1.08752 0.99846 1.22794 0.91169 1.03728 1.00888 1.23996 0.99969 0.98905 0.87685 1.83818 1.29191 1.58314 1.35435 1.24519 0.80796 0.99909 0.99398 1.46130 1.69337 1.13828 1.09600 1.20295 0.76841 0.87223 0.83782 1.90698 1.48291 1.15817 1.84387 1.23537 1.03586 1.04862 0.98486 1.85397 1.86329 1.12881 0.98805 1.22906 1.50841 0.98201 0.96373 0.90910 1.24998 0.95117 0.95546 0.97973 1.70025 1.45560 1.13234 1.21442 0.86119 0.78529 0.80127 0.80732 1.19629 1.20555 1.20563 0.91647 0.92584 0.91919 0.90963 0.90072 0.90835 0.90683 0.91215 0.91222 0.76588 0.82274 0.77379 0.77131 0.76982 0.89363 0.89307 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.46 2.57 -67.94 -0.17 1.28 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 4 C -0.12 -0.83 4.75 -26.73 -0.13 -0.95 16 5 C -0.13 -0.90 5.22 -26.73 -0.14 -1.04 16 6 C 0.12 0.90 5.67 -4.04 -0.02 0.87 16 7 N -0.73 -5.53 5.55 -61.40 -0.34 -5.87 16 8 C 0.59 6.12 7.81 -12.54 -0.10 6.03 16 9 O -0.54 -7.66 16.98 5.26 0.09 -7.57 16 10 C -0.24 -2.08 6.31 -103.28 -0.65 -2.74 16 11 C -0.17 -1.32 11.01 -37.46 -0.41 -1.73 16 12 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 13 O -0.17 -1.22 10.52 7.65 0.08 -1.14 16 14 C 0.02 0.15 11.61 30.08 0.35 0.50 16 15 N -0.73 -8.74 4.53 -53.81 -0.24 -8.98 16 16 C 0.53 9.31 7.81 -10.98 -0.09 9.22 16 17 O -0.52 -11.20 15.52 5.56 0.09 -11.12 16 18 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.53 -15.00 9.50 30.94 0.29 -14.70 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 24 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 2.03 7.44 -40.82 -0.30 1.72 16 38 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.21 0.56 7.47 -52.49 -0.39 0.16 16 41 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -38.06 395.72 -7.57 -45.62 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.46 Total: 1.16 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.24 Total: -5.25 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.15 Total: -39.97 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.26 Total: -19.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.06 -7.57 -45.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487473982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.916 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds