Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46334 * 2 1 4 4 C 1.52995 * 109.46885 * 119.99788 * 2 1 3 5 5 C 1.53006 * 109.46871 * 185.00580 * 4 2 1 6 6 C 1.53003 * 109.47094 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47109 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00174 * 180.02562 * 7 6 5 9 9 O 1.21618 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.47376 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.47019 * 127.19544 * 180.28123 * 10 8 7 12 12 C 1.34177 * 105.95809 * 180.17417 * 11 10 8 13 13 O 1.34214 * 109.12112 * 359.60541 * 12 11 10 14 14 C 1.33655 * 110.90867 * 0.26473 * 13 12 11 15 15 N 1.46492 * 109.47181 * 240.00117 * 2 1 3 16 16 C 1.34782 * 120.00279 * 85.00034 * 15 2 1 17 17 O 1.21279 * 119.99466 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99979 * 180.02562 * 16 15 2 19 19 S 1.81002 * 109.47020 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00079 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99983 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00292 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99534 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00227 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47030 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47275 * 119.99637 * 24 22 20 27 27 H 1.48501 * 109.47155 * 240.00285 * 24 22 20 28 28 H 1.09003 * 109.47354 * 60.00444 * 1 2 3 29 29 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47533 * 299.99878 * 1 2 3 31 31 H 1.08994 * 109.47381 * 65.00634 * 4 2 1 32 32 H 1.09004 * 109.47164 * 304.99716 * 4 2 1 33 33 H 1.08994 * 109.47074 * 59.99866 * 5 4 2 34 34 H 1.08996 * 109.46668 * 299.99806 * 5 4 2 35 35 H 1.09003 * 109.46665 * 59.99986 * 6 5 4 36 36 H 1.08996 * 109.46757 * 299.99766 * 6 5 4 37 37 H 0.97003 * 120.00150 * 359.97438 * 7 6 5 38 38 H 1.08005 * 127.02536 * 0.08201 * 11 10 8 39 39 H 1.08002 * 125.44341 * 179.87398 * 12 11 10 40 40 H 1.08001 * 125.79936 * 179.97438 * 14 13 12 41 41 H 0.97001 * 120.00219 * 264.99341 * 15 2 1 42 42 H 1.09000 * 109.46712 * 299.99702 * 18 16 15 43 43 H 1.08997 * 109.47380 * 59.99766 * 18 16 15 44 44 H 0.96998 * 119.99930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3338 2.5634 7 7 5.5348 -1.2308 2.6248 8 6 6.2078 -1.7960 3.6466 9 8 5.6030 -2.3911 4.5179 10 6 7.6767 -1.6929 3.7082 11 6 8.5643 -2.2500 4.7393 12 6 9.8097 -1.9022 4.3811 13 8 9.7588 -1.2018 3.2373 14 6 8.4973 -1.0647 2.8177 15 7 2.0183 -0.6905 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4116 18 6 2.6489 -0.7288 -3.5877 19 16 2.7092 0.4341 -4.9734 20 6 3.3125 -0.6310 -6.2407 21 1 3.5227 -1.6673 -6.0205 22 6 3.5178 -0.1384 -7.5220 23 7 3.2613 1.1244 -7.7905 24 14 4.1567 -1.2679 -8.8657 25 1 4.3641 -2.6296 -8.3106 26 1 3.1685 -1.3291 -9.9723 27 1 5.4463 -0.7428 -9.3820 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7517 -1.7714 1.2056 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4371 1.3574 34 1 3.9994 -1.0726 0.4261 35 1 3.7864 -2.3841 2.5201 36 1 3.6401 -0.8738 3.4508 37 1 6.0173 -0.7565 1.9297 38 1 8.2733 -2.8211 5.6085 39 1 10.7099 -2.1502 4.9239 40 1 8.1812 -0.5446 1.9255 41 1 2.2491 -1.6317 -1.1526 42 1 3.6480 -1.1213 -3.3985 43 1 1.9760 -1.5506 -3.8325 44 1 3.4050 1.4688 -8.6858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487473982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -104.686022 kcal Electronic energy + Delta-G solvation = -25461.835332 eV Core-core repulsion = 21505.420229 eV Total energy + Delta-G solvation = -3956.415103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.48438 -40.80194 -40.46702 -37.78968 -36.09391 -34.57674 -34.04860 -33.39587 -31.96422 -30.65268 -29.86367 -27.64870 -27.26305 -24.53746 -22.95098 -22.42318 -22.27570 -21.52881 -21.00826 -19.81640 -19.36229 -17.90525 -17.45188 -17.21635 -17.15196 -16.87365 -16.69966 -16.52924 -16.35617 -15.90293 -15.71052 -15.19549 -14.78952 -14.72393 -14.47153 -14.42951 -14.07489 -13.85996 -13.56820 -13.35025 -13.33029 -13.14946 -13.09513 -12.91011 -12.59307 -12.49873 -12.29412 -11.89034 -11.68904 -11.63731 -11.21340 -11.15147 -10.88216 -10.85719 -10.24787 -10.18870 -10.05002 -9.74470 -8.64724 -8.34089 -6.11341 0.33714 1.11613 1.29169 1.41662 1.48903 1.59663 1.68113 1.99161 2.17899 2.27324 2.29306 2.36929 3.00192 3.34338 3.61475 3.63277 3.76330 3.99227 4.02604 4.04449 4.12771 4.30786 4.33435 4.43917 4.52142 4.54379 4.56671 4.69297 4.73727 4.75550 4.86957 4.91597 5.01263 5.07490 5.22226 5.26529 5.31249 5.36896 5.41812 5.43139 5.63066 5.98270 6.20892 6.47052 6.58995 7.07674 7.14019 7.33005 8.75215 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.002060 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.498996 B =13587.567098 C =15968.490064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.125 4.125 6 C 0.124 3.876 7 N -0.715 5.715 8 C 0.583 3.417 9 O -0.587 6.587 10 C -0.273 4.273 11 C -0.199 4.199 12 C -0.025 4.025 13 O -0.180 6.180 14 C 0.043 3.957 15 N -0.707 5.707 16 C 0.536 3.464 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.413 0.587 38 H 0.155 0.845 39 H 0.245 0.755 40 H 0.246 0.754 41 H 0.414 0.586 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 -8.297 25.327 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.163 4.163 6 C 0.000 4.000 7 N -0.367 5.367 8 C 0.373 3.627 9 O -0.468 6.468 10 C -0.277 4.277 11 C -0.218 4.218 12 C -0.090 4.090 13 O -0.074 6.074 14 C -0.028 4.028 15 N -0.361 5.361 16 C 0.321 3.679 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.199 1.199 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.250 0.750 38 H 0.172 0.828 39 H 0.261 0.739 40 H 0.262 0.738 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.802 -6.525 25.618 27.563 hybrid contribution 0.521 -1.850 -1.071 2.200 sum 8.323 -8.375 24.547 27.239 Atomic orbital electron populations 1.22159 0.95047 1.02822 1.01986 1.21032 0.94220 0.97002 0.83972 0.91440 1.21734 0.94392 1.02341 0.96488 1.21749 0.96401 1.01328 0.96841 1.21390 0.78631 1.01107 0.98837 1.45800 1.08507 1.56278 1.26087 1.17575 0.86220 0.77768 0.81186 1.90758 1.70653 1.44895 1.40541 1.21604 0.93631 1.10976 1.01538 1.22971 0.92236 1.05190 1.01437 1.24620 1.00450 0.97079 0.86886 1.83855 1.29409 1.58330 1.35800 1.25095 0.80094 0.98237 0.99350 1.45895 1.67346 1.14474 1.08400 1.19998 0.76696 0.86539 0.84642 1.90691 1.50750 1.17859 1.85160 1.23389 1.05516 1.03101 0.96188 1.85575 1.86714 1.17306 1.02854 1.23232 1.50634 0.98485 0.96854 0.89975 1.26117 0.95169 0.97178 1.00761 1.70187 1.46919 1.15468 1.22192 0.84920 0.77831 0.78262 0.77027 1.18043 1.20085 1.19908 0.95167 0.91034 0.89836 0.89237 0.88416 0.90947 0.90642 0.91595 0.91705 0.75011 0.82761 0.73859 0.73811 0.74873 0.87147 0.87602 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.48 71.98 0.68 -2.34 16 2 C 0.14 2.63 2.57 44.99 0.12 2.75 16 3 H 0.07 1.59 7.58 -2.38 -0.02 1.58 16 4 C -0.11 -1.18 4.75 30.59 0.15 -1.03 16 5 C -0.13 -1.37 5.22 30.60 0.16 -1.21 16 6 C 0.12 1.63 5.67 86.38 0.49 2.12 16 7 N -0.72 -9.94 5.55 -466.42 -2.59 -12.53 16 8 C 0.58 12.08 7.81 86.65 0.68 12.76 16 9 O -0.59 -17.21 16.98 -4.09 -0.07 -17.28 16 10 C -0.27 -4.62 6.31 -18.99 -0.12 -4.74 16 11 C -0.20 -3.11 11.01 23.65 0.26 -2.85 16 12 C -0.03 -0.25 12.03 66.89 0.80 0.55 16 13 O -0.18 -2.14 10.52 4.46 0.05 -2.09 16 14 C 0.04 0.46 11.61 67.39 0.78 1.24 16 15 N -0.71 -15.36 4.53 -442.55 -2.00 -17.37 16 16 C 0.54 18.34 7.81 87.66 0.68 19.02 16 17 O -0.57 -25.01 15.52 -3.03 -0.05 -25.06 16 18 C -0.13 -4.91 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.22 20.57 -56.49 -1.16 -9.39 16 20 C -0.54 -30.50 9.50 67.95 0.65 -29.86 16 21 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 24 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.84 7.75 -2.39 -0.02 0.83 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.41 3.34 7.44 -92.71 -0.69 2.65 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.25 0.34 8.06 -2.91 -0.02 0.31 16 40 H 0.25 0.54 7.47 -2.91 -0.02 0.52 16 41 H 0.41 6.25 8.60 -92.71 -0.80 5.45 16 42 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 43 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -87.20 395.72 2.26 -84.93 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.46 Total: 15.73 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 6.23 Total: -6.90 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -4.31 Total: -84.94 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.07 Total: -44.43 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.39 kcal Total: -87.20 2.26 -84.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487473982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.754 kcal (2) G-P(sol) polarization free energy of solvation -87.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds