Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00459 * 4 2 1 6 6 C 1.38236 * 120.00315 * 264.72643 * 5 4 2 7 7 C 1.38214 * 120.01000 * 179.77117 * 6 5 4 8 8 C 1.38264 * 120.02698 * 0.49784 * 7 6 5 9 9 C 1.38185 * 120.01256 * 359.75207 * 8 7 6 10 10 C 1.38330 * 120.00751 * 84.99453 * 5 4 2 11 11 Cl 1.73601 * 120.01369 * 359.95957 * 10 5 4 12 12 C 1.50703 * 109.46946 * 119.99872 * 2 1 3 13 13 O 1.21278 * 119.99985 * 120.00236 * 12 2 1 14 14 N 1.34779 * 119.99944 * 299.99948 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 18 18 O 1.42900 * 109.47041 * 299.99263 * 16 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 20 20 N 1.46500 * 109.47094 * 184.99933 * 19 16 15 21 21 C 1.36939 * 120.00025 * 179.97438 * 20 19 16 22 22 H 1.08000 * 119.99887 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99964 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99736 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99921 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47650 * 59.99249 * 25 23 21 27 27 H 1.48500 * 109.47130 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.46784 * 299.99415 * 25 23 21 29 29 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 32 32 H 1.09000 * 109.47278 * 184.99898 * 4 2 1 33 33 H 1.09004 * 109.47610 * 305.00203 * 4 2 1 34 34 H 1.08005 * 119.99214 * 359.97438 * 6 5 4 35 35 H 1.08010 * 119.98657 * 180.22806 * 7 6 5 36 36 H 1.08002 * 119.99120 * 179.77054 * 8 7 6 37 37 H 1.08004 * 120.00467 * 180.02562 * 9 8 7 38 38 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 39 39 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 40 40 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 41 41 H 0.96698 * 114.00516 * 300.00983 * 18 16 15 42 42 H 1.09008 * 109.46864 * 304.99696 * 19 16 15 43 43 H 1.09000 * 109.47679 * 64.99728 * 19 16 15 44 44 H 0.97004 * 120.00359 * 359.97438 * 20 19 16 45 45 H 0.97002 * 119.99299 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 6 0.4891 -0.2774 -3.1632 7 6 0.1209 0.4392 -4.2862 8 6 0.9101 1.4844 -4.7295 9 6 2.0649 1.8163 -4.0469 10 6 2.4313 1.1025 -2.9196 11 17 3.8816 1.5192 -2.0613 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 6 1.6847 -0.2193 4.9000 17 1 0.5948 -0.2200 4.8999 18 8 2.1602 1.1283 4.9001 19 6 2.1957 -0.9398 6.1492 20 7 1.6110 -0.3227 7.3424 21 6 1.9248 -0.8036 8.5856 22 1 2.6036 -1.6375 8.6865 23 6 1.3704 -0.2191 9.7161 24 7 0.5435 0.7976 9.5930 25 14 1.7989 -0.8747 11.4119 26 1 3.2633 -0.7615 11.6310 27 1 1.0809 -0.0845 12.4441 28 1 1.3926 -2.2998 11.5089 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 -0.1253 -1.0968 -2.8201 35 1 -0.7815 0.1800 -4.8202 36 1 0.6238 2.0416 -5.6092 37 1 2.6810 2.6330 -4.3931 38 1 1.1493 0.5390 2.5435 39 1 3.2854 -0.9398 3.6507 40 1 1.8324 -1.9679 3.6509 41 1 3.1241 1.2054 4.9001 42 1 1.9084 -1.9904 6.1057 43 1 3.2819 -0.8617 6.1951 44 1 1.0016 0.4266 7.2518 45 1 0.1564 1.2061 10.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497063371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -75.055148 kcal Electronic energy + Delta-G solvation = -26242.804511 eV Core-core repulsion = 22285.630592 eV Total energy + Delta-G solvation = -3957.173919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41552 -39.54804 -37.68745 -36.77180 -35.29031 -34.40826 -34.00115 -31.57451 -31.19477 -31.11430 -29.00173 -27.11777 -25.64994 -23.84834 -23.09450 -22.50706 -21.47355 -21.36534 -19.85338 -17.65667 -17.29065 -17.13095 -16.48378 -16.20522 -15.91663 -15.63471 -15.45079 -15.05199 -14.47832 -14.30643 -14.21419 -13.97465 -13.75138 -13.52865 -13.33704 -12.99538 -12.95283 -12.58151 -12.49606 -12.31547 -11.98811 -11.93318 -11.83730 -11.79713 -11.49942 -11.23074 -11.00748 -10.97274 -10.80941 -10.62686 -10.21926 -9.95780 -9.79727 -9.48881 -9.31900 -9.09001 -9.05058 -8.90686 -6.95052 -5.77016 -3.06741 0.71499 0.81291 1.79909 2.59002 3.04076 3.23825 3.43752 3.47964 3.49201 4.23348 4.32679 4.49442 4.51289 4.54956 4.67173 4.69150 4.74852 4.86554 4.89343 4.93469 5.13140 5.20108 5.23890 5.38592 5.40594 5.45183 5.54838 5.57992 5.62096 5.77682 5.80438 5.83836 5.87470 5.94883 5.96172 6.05429 6.18765 6.35450 6.40614 6.50283 6.66377 7.46598 7.67200 7.92026 8.17838 8.41141 9.52665 10.09093 10.44810 11.45257 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.001775 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.815056 B =15770.275533 C =15964.280712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.067 4.067 5 C -0.068 4.068 6 C -0.103 4.103 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.109 4.109 10 C -0.035 4.035 11 Cl -0.064 7.064 12 C 0.517 3.483 13 O -0.543 6.543 14 N -0.720 5.720 15 C 0.089 3.911 16 C 0.089 3.911 17 H 0.105 0.895 18 O -0.553 6.553 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.245 4.245 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.405 0.595 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.373 0.627 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.388 0.612 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 1.683 -32.379 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.117 0.883 4 C -0.104 4.104 5 C -0.069 4.069 6 C -0.121 4.121 7 C -0.132 4.132 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.061 4.061 11 Cl -0.035 7.035 12 C 0.303 3.697 13 O -0.421 6.421 14 N -0.371 5.371 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.122 0.878 18 O -0.358 6.358 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.376 4.376 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.240 0.760 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.220 0.780 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.184 1.044 -32.210 32.227 hybrid contribution 0.491 0.202 1.084 1.207 sum 0.307 1.246 -31.126 31.153 Atomic orbital electron populations 1.21863 0.92663 1.02918 1.03046 1.21228 0.97786 1.01059 0.92419 0.88309 1.20476 1.03064 0.98029 0.88865 1.19790 0.94541 0.95197 0.97369 1.21096 0.95707 1.00111 0.95227 1.21271 0.99848 0.95604 0.96504 1.21121 0.94356 0.97724 0.99980 1.21073 0.97643 0.99852 0.94223 1.20901 0.90765 0.98451 0.96018 1.98391 1.35953 1.92633 1.76552 1.20523 0.80081 0.84534 0.84596 1.90701 1.38046 1.26442 1.86890 1.45926 1.53677 1.32194 1.05329 1.22097 0.99888 0.97143 0.84408 1.22398 0.99903 0.82451 0.92319 0.87757 1.86573 1.26743 1.25615 1.96839 1.21203 0.96376 0.95753 0.86831 1.42228 1.55311 1.39303 1.00194 1.19179 1.22574 1.12187 0.83643 0.91254 1.24767 0.99809 0.98385 0.97904 1.69671 1.34439 1.25087 1.28644 0.86246 0.77714 0.78004 0.84062 1.21244 1.21640 1.21240 0.91852 0.91732 0.91239 0.89241 0.89757 0.84979 0.85381 0.85205 0.84988 0.75978 0.91123 0.90472 0.77991 0.95390 0.95933 0.77733 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.74 37.16 0.32 -0.76 16 2 C -0.10 -0.94 2.71 -91.77 -0.25 -1.19 16 3 H 0.10 0.87 7.94 -51.93 -0.41 0.46 16 4 C -0.07 -0.61 3.68 -27.88 -0.10 -0.71 16 5 C -0.07 -0.55 4.56 -104.59 -0.48 -1.02 16 6 C -0.10 -0.67 8.37 -39.59 -0.33 -1.00 16 7 C -0.11 -0.63 10.05 -39.58 -0.40 -1.03 16 8 C -0.11 -0.64 10.05 -39.59 -0.40 -1.04 16 9 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 10 C -0.03 -0.29 6.31 -39.50 -0.25 -0.54 16 11 Cl -0.06 -0.59 27.21 -51.86 -1.41 -2.00 16 12 C 0.52 6.30 7.15 -10.98 -0.08 6.22 16 13 O -0.54 -8.58 15.92 5.56 0.09 -8.49 16 14 N -0.72 -8.28 5.34 -60.29 -0.32 -8.60 16 15 C 0.09 1.17 5.34 -4.04 -0.02 1.14 16 16 C 0.09 1.36 3.09 -26.73 -0.08 1.27 16 17 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 18 O -0.55 -8.63 13.03 -35.23 -0.46 -9.09 16 19 C 0.13 2.46 5.90 -4.04 -0.02 2.44 16 20 N -0.73 -18.37 5.55 -59.90 -0.33 -18.70 16 21 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 25 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 31 H 0.07 0.45 6.53 -51.93 -0.34 0.11 16 32 H 0.09 0.96 6.94 -51.93 -0.36 0.60 16 33 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 36 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.41 4.10 7.77 -40.82 -0.32 3.79 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.37 4.88 9.04 45.56 0.41 5.29 16 42 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.39 10.51 7.67 -40.82 -0.31 10.19 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -33.80 390.98 -9.48 -43.28 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.91 Total: 12.73 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.72 Total: -4.85 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.07 Total: -54.95 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.37 Total: -17.58 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.41 Total: -2.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.80 -9.48 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497063371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.778 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds