Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00459 * 4 2 1 6 6 C 1.38236 * 120.00315 * 264.72643 * 5 4 2 7 7 C 1.38214 * 120.01000 * 179.77117 * 6 5 4 8 8 C 1.38264 * 120.02698 * 0.49784 * 7 6 5 9 9 C 1.38185 * 120.01256 * 359.75207 * 8 7 6 10 10 C 1.38330 * 120.00751 * 84.99453 * 5 4 2 11 11 Cl 1.73601 * 120.01369 * 359.95957 * 10 5 4 12 12 C 1.50703 * 109.46946 * 119.99872 * 2 1 3 13 13 O 1.21278 * 119.99985 * 120.00236 * 12 2 1 14 14 N 1.34779 * 119.99944 * 299.99948 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 18 18 O 1.42900 * 109.47041 * 299.99263 * 16 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 20 20 N 1.46500 * 109.47094 * 184.99933 * 19 16 15 21 21 C 1.36939 * 120.00025 * 179.97438 * 20 19 16 22 22 H 1.08000 * 119.99887 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99964 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99736 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99921 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47650 * 59.99249 * 25 23 21 27 27 H 1.48500 * 109.47130 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.46784 * 299.99415 * 25 23 21 29 29 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 32 32 H 1.09000 * 109.47278 * 184.99898 * 4 2 1 33 33 H 1.09004 * 109.47610 * 305.00203 * 4 2 1 34 34 H 1.08005 * 119.99214 * 359.97438 * 6 5 4 35 35 H 1.08010 * 119.98657 * 180.22806 * 7 6 5 36 36 H 1.08002 * 119.99120 * 179.77054 * 8 7 6 37 37 H 1.08004 * 120.00467 * 180.02562 * 9 8 7 38 38 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 39 39 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 40 40 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 41 41 H 0.96698 * 114.00516 * 300.00983 * 18 16 15 42 42 H 1.09008 * 109.46864 * 304.99696 * 19 16 15 43 43 H 1.09000 * 109.47679 * 64.99728 * 19 16 15 44 44 H 0.97004 * 120.00359 * 359.97438 * 20 19 16 45 45 H 0.97002 * 119.99299 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 6 0.4891 -0.2774 -3.1632 7 6 0.1209 0.4392 -4.2862 8 6 0.9101 1.4844 -4.7295 9 6 2.0649 1.8163 -4.0469 10 6 2.4313 1.1025 -2.9196 11 17 3.8816 1.5192 -2.0613 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 6 1.6847 -0.2193 4.9000 17 1 0.5948 -0.2200 4.8999 18 8 2.1602 1.1283 4.9001 19 6 2.1957 -0.9398 6.1492 20 7 1.6110 -0.3227 7.3424 21 6 1.9248 -0.8036 8.5856 22 1 2.6036 -1.6375 8.6865 23 6 1.3704 -0.2191 9.7161 24 7 0.5435 0.7976 9.5930 25 14 1.7989 -0.8747 11.4119 26 1 3.2633 -0.7615 11.6310 27 1 1.0809 -0.0845 12.4441 28 1 1.3926 -2.2998 11.5089 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 -0.1253 -1.0968 -2.8201 35 1 -0.7815 0.1800 -4.8202 36 1 0.6238 2.0416 -5.6092 37 1 2.6810 2.6330 -4.3931 38 1 1.1493 0.5390 2.5435 39 1 3.2854 -0.9398 3.6507 40 1 1.8324 -1.9679 3.6509 41 1 3.1241 1.2054 4.9001 42 1 1.9084 -1.9904 6.1057 43 1 3.2819 -0.8617 6.1951 44 1 1.0016 0.4266 7.2518 45 1 0.1564 1.2061 10.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497063371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -98.883277 kcal Electronic energy + Delta-G solvation = -26243.837776 eV Core-core repulsion = 22285.630592 eV Total energy + Delta-G solvation = -3958.207184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24870 -40.25347 -38.97678 -37.38362 -36.12118 -35.99288 -35.30240 -33.21983 -32.06089 -31.63352 -30.42576 -27.73193 -27.19956 -25.06654 -23.90992 -23.56441 -22.77913 -22.12419 -20.78775 -19.24618 -18.44467 -17.98820 -17.54367 -17.19684 -16.77611 -16.58907 -16.42930 -16.15116 -15.97156 -15.45911 -15.07479 -14.90999 -14.78717 -14.64724 -14.41799 -14.10342 -13.87957 -13.80536 -13.56133 -13.19487 -13.15028 -12.96661 -12.72456 -12.59947 -12.48503 -12.34645 -12.21058 -12.10491 -11.98623 -11.90880 -11.81548 -11.62374 -11.12797 -10.97378 -10.72107 -10.13171 -9.81587 -9.59295 -9.02158 -7.95582 -5.25220 0.21111 0.33055 1.21344 1.47174 1.50275 1.56520 1.61223 2.10763 2.55763 2.70872 3.35027 3.44609 3.56897 3.60270 3.77548 3.81770 3.96806 4.02729 4.07499 4.19908 4.20576 4.34417 4.41055 4.44269 4.47620 4.60950 4.70124 4.71966 4.78363 4.83894 4.89665 4.92429 5.04810 5.14917 5.20287 5.25338 5.33822 5.37839 5.47271 5.48978 5.53257 5.91296 6.25420 6.51206 6.77557 7.20873 7.32547 8.07567 8.30948 9.27341 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.001775 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.815056 B =15770.275533 C =15964.280712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.103 0.897 4 C -0.061 4.061 5 C -0.080 4.080 6 C -0.107 4.107 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.051 4.051 11 Cl -0.082 7.082 12 C 0.516 3.484 13 O -0.582 6.582 14 N -0.712 5.712 15 C 0.102 3.898 16 C 0.109 3.891 17 H 0.101 0.899 18 O -0.563 6.563 19 C 0.122 3.878 20 N -0.739 5.739 21 C -0.251 4.251 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.976 3.024 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.277 1.277 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.384 0.616 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.377 0.623 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 1.576 -33.896 33.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.121 0.879 4 C -0.099 4.099 5 C -0.081 4.081 6 C -0.125 4.125 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.137 4.137 10 C -0.077 4.077 11 Cl -0.053 7.053 12 C 0.303 3.697 13 O -0.462 6.462 14 N -0.363 5.363 15 C -0.023 4.023 16 C 0.049 3.951 17 H 0.119 0.881 18 O -0.369 6.369 19 C -0.005 4.005 20 N -0.382 5.382 21 C -0.383 4.383 22 H 0.094 0.906 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.804 3.196 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.203 1.203 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.233 0.767 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.886 0.929 -33.757 33.782 hybrid contribution 0.730 0.219 1.436 1.625 sum -0.155 1.148 -32.322 32.343 Atomic orbital electron populations 1.21856 0.90937 1.03263 1.03961 1.21198 0.99040 1.00581 0.90755 0.87937 1.20354 1.01671 0.98194 0.89655 1.19728 0.95495 0.95464 0.97372 1.21306 0.95206 1.00541 0.95410 1.21611 1.00494 0.94934 0.95959 1.21470 0.93519 0.97628 1.00326 1.21292 0.98403 1.00068 0.93897 1.21062 0.90509 0.99327 0.96814 1.98379 1.37113 1.92792 1.77055 1.21067 0.79237 0.84024 0.85328 1.90684 1.39804 1.28276 1.87407 1.45841 1.53475 1.32242 1.04787 1.21831 0.99730 0.96761 0.84024 1.22090 0.99546 0.82086 0.91370 0.88071 1.86552 1.27955 1.25630 1.96767 1.21410 0.96436 0.96053 0.86612 1.42405 1.55431 1.39188 1.01211 1.19613 1.21798 1.11868 0.84993 0.90621 1.25610 1.00354 0.99079 1.01730 1.69830 1.36010 1.26673 1.29239 0.85186 0.77581 0.77503 0.79306 1.20403 1.22084 1.20317 0.91782 0.91163 0.89969 0.91387 0.90042 0.83642 0.82840 0.82725 0.84079 0.74936 0.91183 0.90650 0.76677 0.94875 0.95274 0.79117 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.74 71.98 0.63 -1.23 16 2 C -0.09 -1.65 2.71 -11.54 -0.03 -1.69 16 3 H 0.10 1.74 7.94 -2.39 -0.02 1.72 16 4 C -0.06 -1.11 3.68 29.85 0.11 -1.00 16 5 C -0.08 -1.21 4.56 -19.84 -0.09 -1.30 16 6 C -0.11 -1.17 8.37 22.26 0.19 -0.98 16 7 C -0.11 -0.92 10.05 22.27 0.22 -0.70 16 8 C -0.11 -0.96 10.05 22.26 0.22 -0.74 16 9 C -0.12 -1.44 9.83 22.29 0.22 -1.23 16 10 C -0.05 -0.81 6.31 22.32 0.14 -0.67 16 11 Cl -0.08 -1.52 27.21 -2.72 -0.07 -1.60 16 12 C 0.52 12.36 7.15 87.66 0.63 12.99 16 13 O -0.58 -18.48 15.92 -3.02 -0.05 -18.52 16 14 N -0.71 -15.72 5.34 -463.05 -2.47 -18.19 16 15 C 0.10 2.57 5.34 86.38 0.46 3.03 16 16 C 0.11 3.23 3.09 30.59 0.09 3.32 16 17 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 18 O -0.56 -17.04 13.03 -148.98 -1.94 -18.98 16 19 C 0.12 4.65 5.90 86.38 0.51 5.16 16 20 N -0.74 -37.41 5.55 -343.44 -1.91 -39.32 16 21 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 24 N -0.97 -59.64 13.06 21.65 0.28 -59.35 16 25 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.84 7.56 -2.38 -0.02 0.82 16 31 H 0.08 0.89 6.53 -2.39 -0.02 0.87 16 32 H 0.07 1.52 6.94 -2.39 -0.02 1.51 16 33 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 34 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.41 7.82 7.77 -92.71 -0.72 7.10 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.38 9.65 9.04 -74.06 -0.67 8.98 16 42 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.38 20.58 7.67 -92.71 -0.71 19.87 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -72.49 390.98 -0.59 -73.08 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -1.07 Total: 36.75 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.61 Total: -2.14 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -4.10 Total: -116.86 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.99 Total: -37.51 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.60 kcal Total: -72.49 -0.59 -73.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497063371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.804 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds