Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47845 * 2 1 4 4 C 1.53006 * 109.47264 * 120.00218 * 2 1 3 5 5 C 1.50696 * 109.46891 * 294.99829 * 4 2 1 6 6 C 1.38238 * 120.00609 * 264.72692 * 5 4 2 7 7 C 1.38222 * 120.01052 * 179.77197 * 6 5 4 8 8 C 1.38264 * 120.02857 * 0.49932 * 7 6 5 9 9 C 1.38186 * 120.01336 * 359.74904 * 8 7 6 10 10 C 1.38334 * 120.00691 * 84.99651 * 5 4 2 11 11 Cl 1.73596 * 120.01454 * 359.95840 * 10 5 4 12 12 C 1.50704 * 109.47022 * 239.99563 * 2 1 3 13 13 O 1.21276 * 120.00499 * 240.00267 * 12 2 1 14 14 N 1.34783 * 119.99567 * 60.00417 * 12 2 1 15 15 C 1.46497 * 119.99638 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.46900 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47164 * 60.00014 * 16 15 14 18 18 O 1.42903 * 109.47171 * 299.99748 * 16 15 14 19 19 C 1.53003 * 109.47376 * 180.02562 * 16 15 14 20 20 N 1.46494 * 109.47283 * 185.00021 * 19 16 15 21 21 C 1.36937 * 120.00022 * 179.97438 * 20 19 16 22 22 H 1.08002 * 120.00269 * 0.02562 * 21 20 19 23 23 C 1.38819 * 120.00106 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99677 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99701 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47086 * 89.99739 * 25 23 21 27 27 H 1.48503 * 109.46612 * 209.99678 * 25 23 21 28 28 H 1.48497 * 109.46986 * 329.99380 * 25 23 21 29 29 H 1.09001 * 109.47500 * 300.00131 * 1 2 3 30 30 H 1.08997 * 109.47131 * 59.99878 * 1 2 3 31 31 H 1.08998 * 109.47845 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46956 * 54.99661 * 4 2 1 33 33 H 1.08996 * 109.47450 * 174.99706 * 4 2 1 34 34 H 1.08001 * 119.98944 * 359.97438 * 6 5 4 35 35 H 1.08008 * 119.98316 * 180.26981 * 7 6 5 36 36 H 1.07995 * 119.99165 * 179.76835 * 8 7 6 37 37 H 1.07999 * 120.01015 * 179.97438 * 9 8 7 38 38 H 0.96996 * 120.00052 * 0.02562 * 14 12 2 39 39 H 1.08999 * 109.47200 * 60.00094 * 15 14 12 40 40 H 1.08997 * 109.47487 * 300.00148 * 15 14 12 41 41 H 0.96700 * 114.00311 * 300.00378 * 18 16 15 42 42 H 1.09005 * 109.46682 * 304.99749 * 19 16 15 43 43 H 1.08999 * 109.47221 * 64.99915 * 19 16 15 44 44 H 0.96999 * 120.00388 * 359.97438 * 20 19 16 45 45 H 0.97005 * 119.99686 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.5262 0.9552 3.0432 7 6 2.1589 1.6726 4.1661 8 6 0.9103 1.4847 4.7294 9 6 0.0268 0.5833 4.1669 10 6 0.3919 -0.1314 3.0397 11 17 -0.7177 -1.2636 2.3322 12 6 2.0323 -0.7105 -1.2304 13 8 2.7294 -1.6966 -1.1192 14 7 1.7066 -0.2500 -2.4546 15 6 2.1954 -0.9404 -3.6507 16 6 1.6859 -0.2188 -4.9000 17 1 2.0492 0.8089 -4.8996 18 8 0.2568 -0.2188 -4.9005 19 6 2.1957 -0.9401 -6.1493 20 7 1.8086 -0.1832 -7.3423 21 6 2.1581 -0.6388 -8.5855 22 1 2.7188 -1.5564 -8.6864 23 6 1.7909 0.0781 -9.7161 24 7 2.1273 -0.3596 -10.9108 25 14 0.8205 1.6647 -9.5415 26 1 1.7597 2.8091 -9.4247 27 1 -0.0415 1.8516 -10.7362 28 1 -0.0281 1.5946 -8.3249 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 3.5035 1.0989 2.6064 35 1 2.8491 2.3775 4.6059 36 1 0.6254 2.0428 5.6090 37 1 -0.9484 0.4363 4.6072 38 1 1.1494 0.5389 -2.5436 39 1 1.8324 -1.9681 -3.6509 40 1 3.2854 -0.9400 -3.6506 41 1 -0.1365 -1.1022 -4.9008 42 1 3.2821 -1.0187 -6.1054 43 1 1.7607 -1.9384 -6.1954 44 1 1.3048 0.6407 -7.2517 45 1 1.8710 0.1415 -11.7009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497063374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -63.468278 kcal Electronic energy + Delta-G solvation = -26396.653482 eV Core-core repulsion = 22439.982008 eV Total energy + Delta-G solvation = -3956.671474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49364 -39.60902 -37.84116 -36.87019 -35.30102 -34.53837 -34.14399 -31.70696 -31.40874 -31.07034 -29.36888 -27.13327 -25.90868 -23.95077 -23.07196 -22.26305 -21.58467 -21.36542 -19.93632 -17.83271 -17.67716 -17.28748 -16.52887 -16.24044 -16.08058 -15.67460 -15.51008 -15.14079 -14.61505 -14.47758 -14.32784 -14.09683 -13.75823 -13.61836 -13.32026 -13.21218 -12.95545 -12.59593 -12.57066 -12.39930 -12.11219 -11.96518 -11.90064 -11.84059 -11.38871 -11.32136 -11.29414 -10.88274 -10.82025 -10.66627 -10.18878 -10.03042 -9.72332 -9.56486 -9.36204 -9.16739 -9.06596 -8.94118 -7.27398 -5.78952 -3.15267 0.67088 0.77425 1.73959 2.52518 2.97738 3.18784 3.38243 3.43936 3.45712 4.18482 4.28707 4.46278 4.48594 4.52898 4.58697 4.62514 4.68023 4.75058 4.83735 4.89605 5.06283 5.12729 5.17627 5.32290 5.43540 5.44586 5.48528 5.50102 5.54077 5.69827 5.74889 5.75953 5.82914 5.85756 5.88627 5.93170 6.02327 6.30358 6.32716 6.40571 6.53403 7.38873 7.75587 7.96677 8.10979 8.39445 9.18810 9.90761 10.10312 11.39032 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.001881 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.908904 B =14884.343517 C =14922.500142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.067 4.067 5 C -0.069 4.069 6 C -0.105 4.105 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.110 4.110 10 C -0.034 4.034 11 Cl -0.062 7.062 12 C 0.517 3.483 13 O -0.542 6.542 14 N -0.721 5.721 15 C 0.089 3.911 16 C 0.085 3.915 17 H 0.104 0.896 18 O -0.556 6.556 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.249 4.249 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.273 1.273 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.405 0.595 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.376 0.624 42 H 0.038 0.962 43 H 0.032 0.968 44 H 0.365 0.635 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 4.037 35.641 36.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 H 0.116 0.884 4 C -0.105 4.105 5 C -0.070 4.070 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.061 4.061 11 Cl -0.033 7.033 12 C 0.302 3.698 13 O -0.420 6.420 14 N -0.372 5.372 15 C -0.035 4.035 16 C 0.025 3.975 17 H 0.122 0.878 18 O -0.362 6.362 19 C 0.003 3.997 20 N -0.395 5.395 21 C -0.378 4.378 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.580 5.580 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.223 0.777 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.199 0.801 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.190 3.708 35.443 35.779 hybrid contribution -1.053 0.831 -0.183 1.354 sum -4.243 4.539 35.260 35.803 Atomic orbital electron populations 1.22247 0.92517 1.03226 1.02853 1.21240 0.98057 1.00655 0.92322 0.88449 1.20482 1.02541 0.98619 0.88851 1.19796 0.92283 0.97594 0.97278 1.21105 0.99538 0.95578 0.96067 1.21279 0.96620 0.99279 0.95925 1.21128 0.93784 0.98109 1.00162 1.21083 1.00638 0.96348 0.94765 1.20872 0.91961 0.96416 0.96802 1.98381 1.61838 1.60107 1.82966 1.20553 0.80005 0.84598 0.84596 1.90707 1.38032 1.26336 1.86875 1.45918 1.53629 1.32350 1.05342 1.22068 1.00336 0.96883 0.84220 1.22453 0.81382 1.00966 0.92680 0.87813 1.86546 1.18719 1.34029 1.96876 1.21178 0.98153 0.94625 0.85755 1.42570 1.67550 1.27465 1.01964 1.19046 1.29682 1.07335 0.81757 0.89256 1.24680 1.00591 0.98735 0.95046 1.69708 1.51112 1.40255 0.96957 0.86533 0.80346 0.84561 0.77121 1.21108 1.21727 1.19863 0.91064 0.92167 0.91466 0.89407 0.89542 0.84957 0.85345 0.85172 0.84959 0.76026 0.90919 0.90298 0.77681 0.94457 0.95054 0.80120 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.32 37.15 0.27 -0.94 16 2 C -0.10 -0.87 2.71 -91.77 -0.25 -1.12 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.07 -0.59 3.97 -27.88 -0.11 -0.70 16 5 C -0.07 -0.53 4.86 -104.59 -0.51 -1.04 16 6 C -0.10 -0.67 9.68 -39.59 -0.38 -1.06 16 7 C -0.11 -0.61 10.05 -39.58 -0.40 -1.01 16 8 C -0.11 -0.61 10.05 -39.59 -0.40 -1.01 16 9 C -0.11 -0.70 9.83 -39.55 -0.39 -1.09 16 10 C -0.03 -0.26 5.18 -39.49 -0.20 -0.47 16 11 Cl -0.06 -0.50 23.12 -51.86 -1.20 -1.70 16 12 C 0.52 5.96 7.15 -10.98 -0.08 5.89 16 13 O -0.54 -8.26 15.92 5.56 0.09 -8.17 16 14 N -0.72 -7.70 5.34 -60.30 -0.32 -8.02 16 15 C 0.09 1.09 5.34 -4.04 -0.02 1.07 16 16 C 0.08 1.18 3.09 -26.73 -0.08 1.10 16 17 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 18 O -0.56 -7.88 13.03 -35.23 -0.46 -8.33 16 19 C 0.13 2.39 5.90 -4.04 -0.02 2.37 16 20 N -0.75 -17.65 5.35 -59.91 -0.32 -17.97 16 21 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 25 Si 0.88 22.26 27.74 -169.99 -4.71 17.54 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.27 -6.55 6.52 56.52 0.37 -6.18 16 29 H 0.07 0.55 5.29 -51.93 -0.27 0.27 16 30 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.07 0.60 6.73 -51.93 -0.35 0.25 16 32 H 0.09 0.88 7.13 -51.93 -0.37 0.51 16 33 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.40 3.72 7.77 -40.82 -0.32 3.41 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.38 4.39 9.05 45.56 0.41 4.81 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.37 8.56 5.53 -40.82 -0.23 8.33 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -34.59 380.66 -8.99 -43.58 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.74 Total: 11.13 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.83 Total: -5.15 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.13 Total: -54.63 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.37 Total: -16.50 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.20 Total: -1.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.59 -8.99 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497063374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.893 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds