Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47845 * 2 1 4 4 C 1.53006 * 109.47264 * 120.00218 * 2 1 3 5 5 C 1.50696 * 109.46891 * 294.99829 * 4 2 1 6 6 C 1.38238 * 120.00609 * 264.72692 * 5 4 2 7 7 C 1.38222 * 120.01052 * 179.77197 * 6 5 4 8 8 C 1.38264 * 120.02857 * 0.49932 * 7 6 5 9 9 C 1.38186 * 120.01336 * 359.74904 * 8 7 6 10 10 C 1.38334 * 120.00691 * 84.99651 * 5 4 2 11 11 Cl 1.73596 * 120.01454 * 359.95840 * 10 5 4 12 12 C 1.50704 * 109.47022 * 239.99563 * 2 1 3 13 13 O 1.21276 * 120.00499 * 240.00267 * 12 2 1 14 14 N 1.34783 * 119.99567 * 60.00417 * 12 2 1 15 15 C 1.46497 * 119.99638 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.46900 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47164 * 60.00014 * 16 15 14 18 18 O 1.42903 * 109.47171 * 299.99748 * 16 15 14 19 19 C 1.53003 * 109.47376 * 180.02562 * 16 15 14 20 20 N 1.46494 * 109.47283 * 185.00021 * 19 16 15 21 21 C 1.36937 * 120.00022 * 179.97438 * 20 19 16 22 22 H 1.08002 * 120.00269 * 0.02562 * 21 20 19 23 23 C 1.38819 * 120.00106 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99677 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99701 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47086 * 89.99739 * 25 23 21 27 27 H 1.48503 * 109.46612 * 209.99678 * 25 23 21 28 28 H 1.48497 * 109.46986 * 329.99380 * 25 23 21 29 29 H 1.09001 * 109.47500 * 300.00131 * 1 2 3 30 30 H 1.08997 * 109.47131 * 59.99878 * 1 2 3 31 31 H 1.08998 * 109.47845 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46956 * 54.99661 * 4 2 1 33 33 H 1.08996 * 109.47450 * 174.99706 * 4 2 1 34 34 H 1.08001 * 119.98944 * 359.97438 * 6 5 4 35 35 H 1.08008 * 119.98316 * 180.26981 * 7 6 5 36 36 H 1.07995 * 119.99165 * 179.76835 * 8 7 6 37 37 H 1.07999 * 120.01015 * 179.97438 * 9 8 7 38 38 H 0.96996 * 120.00052 * 0.02562 * 14 12 2 39 39 H 1.08999 * 109.47200 * 60.00094 * 15 14 12 40 40 H 1.08997 * 109.47487 * 300.00148 * 15 14 12 41 41 H 0.96700 * 114.00311 * 300.00378 * 18 16 15 42 42 H 1.09005 * 109.46682 * 304.99749 * 19 16 15 43 43 H 1.08999 * 109.47221 * 64.99915 * 19 16 15 44 44 H 0.96999 * 120.00388 * 359.97438 * 20 19 16 45 45 H 0.97005 * 119.99686 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.5262 0.9552 3.0432 7 6 2.1589 1.6726 4.1661 8 6 0.9103 1.4847 4.7294 9 6 0.0268 0.5833 4.1669 10 6 0.3919 -0.1314 3.0397 11 17 -0.7177 -1.2636 2.3322 12 6 2.0323 -0.7105 -1.2304 13 8 2.7294 -1.6966 -1.1192 14 7 1.7066 -0.2500 -2.4546 15 6 2.1954 -0.9404 -3.6507 16 6 1.6859 -0.2188 -4.9000 17 1 2.0492 0.8089 -4.8996 18 8 0.2568 -0.2188 -4.9005 19 6 2.1957 -0.9401 -6.1493 20 7 1.8086 -0.1832 -7.3423 21 6 2.1581 -0.6388 -8.5855 22 1 2.7188 -1.5564 -8.6864 23 6 1.7909 0.0781 -9.7161 24 7 2.1273 -0.3596 -10.9108 25 14 0.8205 1.6647 -9.5415 26 1 1.7597 2.8091 -9.4247 27 1 -0.0415 1.8516 -10.7362 28 1 -0.0281 1.5946 -8.3249 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 3.5035 1.0989 2.6064 35 1 2.8491 2.3775 4.6059 36 1 0.6254 2.0428 5.6090 37 1 -0.9484 0.4363 4.6072 38 1 1.1494 0.5389 -2.5436 39 1 1.8324 -1.9681 -3.6509 40 1 3.2854 -0.9400 -3.6506 41 1 -0.1365 -1.1022 -4.9008 42 1 3.2821 -1.0187 -6.1054 43 1 1.7607 -1.9384 -6.1954 44 1 1.3048 0.6407 -7.2517 45 1 1.8710 0.1415 -11.7009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497063374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -88.691329 kcal Electronic energy + Delta-G solvation = -26397.747235 eV Core-core repulsion = 22439.982008 eV Total energy + Delta-G solvation = -3957.765228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26966 -40.27388 -39.03261 -37.41697 -36.23502 -35.97843 -35.31000 -33.50067 -32.19152 -31.58539 -30.68915 -27.74891 -27.34688 -24.95737 -23.79702 -23.48654 -22.86235 -22.12510 -20.82064 -19.78241 -18.49493 -17.99860 -17.51222 -17.25092 -16.76752 -16.55521 -16.51569 -16.16616 -15.99679 -15.45096 -15.25987 -15.09234 -14.84525 -14.72407 -14.42963 -14.24499 -13.92094 -13.81505 -13.46992 -13.35136 -13.24187 -13.14376 -12.81242 -12.66800 -12.46489 -12.39342 -12.24482 -11.93689 -11.92614 -11.87282 -11.82650 -11.25730 -11.16017 -11.01674 -10.72813 -10.12749 -9.83520 -9.57393 -9.32934 -8.04432 -5.38436 0.20147 0.32141 1.20869 1.39510 1.42198 1.50573 1.61368 2.10420 2.48097 2.69694 3.25182 3.35355 3.50567 3.57964 3.76284 3.82558 3.96185 4.01382 4.02693 4.08952 4.19567 4.21859 4.37746 4.41511 4.47103 4.59575 4.69387 4.72953 4.76549 4.84464 4.90723 4.91527 5.01539 5.15545 5.16946 5.27432 5.32342 5.38425 5.48111 5.52558 5.72562 5.90133 6.18835 6.51897 6.74215 7.06387 7.21942 7.81490 8.00975 9.16745 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.001881 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.908904 B =14884.343517 C =14922.500142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.118 0.882 4 C -0.062 4.062 5 C -0.081 4.081 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.047 4.047 11 Cl -0.075 7.075 12 C 0.516 3.484 13 O -0.583 6.583 14 N -0.711 5.711 15 C 0.099 3.901 16 C 0.106 3.894 17 H 0.111 0.889 18 O -0.562 6.562 19 C 0.124 3.876 20 N -0.752 5.752 21 C -0.239 4.239 22 H 0.056 0.944 23 C -0.064 4.064 24 N -0.983 5.983 25 Si 0.958 3.042 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.251 1.251 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.415 0.585 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.387 0.613 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.369 0.631 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 6.457 38.269 39.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.136 0.864 4 C -0.100 4.100 5 C -0.082 4.082 6 C -0.129 4.129 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.074 4.074 11 Cl -0.046 7.046 12 C 0.304 3.696 13 O -0.463 6.463 14 N -0.363 5.363 15 C -0.026 4.026 16 C 0.047 3.953 17 H 0.128 0.872 18 O -0.369 6.369 19 C -0.003 4.003 20 N -0.398 5.398 21 C -0.370 4.370 22 H 0.074 0.926 23 C -0.256 4.256 24 N -0.633 5.633 25 Si 0.785 3.215 26 H -0.203 1.203 27 H -0.223 1.223 28 H -0.175 1.175 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.236 0.764 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.203 0.797 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.108 6.134 38.128 38.836 hybrid contribution -0.710 -0.014 -0.921 1.163 sum -4.818 6.120 37.207 38.014 Atomic orbital electron populations 1.22200 0.91874 1.02681 1.03538 1.21226 0.98364 1.01135 0.90611 0.86401 1.20364 1.01867 0.98030 0.89741 1.19739 0.92795 0.98388 0.97263 1.21312 0.99788 0.95349 0.96494 1.21600 0.97055 0.99105 0.95309 1.21473 0.93439 0.97503 1.00575 1.21314 1.01502 0.96378 0.94409 1.21008 0.91949 0.96822 0.97588 1.98374 1.62246 1.60702 1.83247 1.21067 0.79162 0.84047 0.85372 1.90693 1.39948 1.28213 1.87416 1.45808 1.53363 1.32408 1.04688 1.21828 1.00052 0.96614 0.84071 1.22145 0.81371 1.00734 0.91095 0.87152 1.86524 1.18471 1.35184 1.96745 1.21404 0.98321 0.94732 0.85876 1.42541 1.67512 1.27990 1.01768 1.19042 1.28128 1.05868 0.83958 0.92606 1.25550 1.02548 1.02894 0.94615 1.69892 1.53261 1.42228 0.97925 0.85354 0.78848 0.79744 0.77520 1.20270 1.22305 1.17543 0.90536 0.91234 0.92670 0.91248 0.90283 0.83887 0.83014 0.82732 0.83885 0.74792 0.91222 0.90643 0.76377 0.94391 0.94901 0.79726 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.32 71.98 0.53 -1.60 16 2 C -0.09 -1.46 2.71 -11.54 -0.03 -1.49 16 3 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.06 -1.07 3.97 29.85 0.12 -0.95 16 5 C -0.08 -1.16 4.86 -19.84 -0.10 -1.26 16 6 C -0.11 -1.22 9.68 22.27 0.22 -1.01 16 7 C -0.11 -0.91 10.05 22.27 0.22 -0.69 16 8 C -0.11 -0.89 10.05 22.26 0.22 -0.67 16 9 C -0.12 -1.29 9.83 22.29 0.22 -1.07 16 10 C -0.05 -0.68 5.18 22.33 0.12 -0.56 16 11 Cl -0.07 -1.19 23.12 -2.72 -0.06 -1.26 16 12 C 0.52 11.38 7.15 87.66 0.63 12.00 16 13 O -0.58 -17.69 15.92 -3.02 -0.05 -17.74 16 14 N -0.71 -13.84 5.34 -463.06 -2.47 -16.31 16 15 C 0.10 2.26 5.34 86.38 0.46 2.72 16 16 C 0.11 2.73 3.09 30.60 0.09 2.83 16 17 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 18 O -0.56 -14.37 13.03 -148.98 -1.94 -16.31 16 19 C 0.12 4.36 5.90 86.38 0.51 4.87 16 20 N -0.75 -34.50 5.35 -343.45 -1.84 -36.34 16 21 C -0.24 -13.68 10.47 84.04 0.88 -12.80 16 22 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 23 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 24 N -0.98 -63.31 13.97 21.65 0.30 -63.00 16 25 Si 0.96 45.65 27.74 68.60 1.90 47.55 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 29 H 0.08 1.06 5.29 -2.39 -0.01 1.05 16 30 H 0.07 0.87 7.56 -2.39 -0.02 0.85 16 31 H 0.05 0.95 6.73 -2.39 -0.02 0.93 16 32 H 0.07 1.43 7.13 -2.39 -0.02 1.42 16 33 H 0.08 1.43 7.86 -2.39 -0.02 1.42 16 34 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.15 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.41 6.50 7.77 -92.71 -0.72 5.78 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.39 8.10 9.05 -74.06 -0.67 7.43 16 42 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.37 16.36 5.53 -92.71 -0.51 15.85 16 45 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -75.34 380.66 -0.53 -75.87 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.93 Total: 30.57 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 4.55 Total: -3.04 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -4.01 Total: -115.65 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.99 Total: -34.05 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.06 Total: -1.26 kcal Total: -75.34 -0.53 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497063374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.824 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds