Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47063 * 2 1 4 4 C 1.50705 * 109.47067 * 240.00861 * 2 1 3 5 5 O 1.21275 * 119.99591 * 253.80450 * 4 2 1 6 6 N 1.34771 * 120.00167 * 73.80020 * 4 2 1 7 7 C 1.46505 * 120.00264 * 3.74392 * 6 4 2 8 8 C 1.46504 * 120.00274 * 183.74666 * 6 4 2 9 9 C 1.52991 * 109.47434 * 89.99946 * 8 6 4 10 10 H 1.09006 * 109.47453 * 305.00171 * 9 8 6 11 11 O 1.42899 * 109.47107 * 64.99939 * 9 8 6 12 12 C 1.52999 * 109.47425 * 185.00490 * 9 8 6 13 13 N 1.46497 * 109.47383 * 180.02562 * 12 9 8 14 14 C 1.36935 * 120.00529 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99543 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00517 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47066 * 59.99792 * 18 16 14 20 20 H 1.48499 * 109.46882 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46909 * 300.00077 * 18 16 14 22 22 C 1.50696 * 109.47286 * 120.00568 * 2 1 3 23 23 C 1.38242 * 119.98395 * 240.00072 * 22 2 1 24 24 C 1.38212 * 120.00822 * 179.97438 * 23 22 2 25 25 C 1.38351 * 119.99310 * 0.02562 * 24 23 22 26 26 Cl 1.73603 * 120.01674 * 180.02562 * 25 24 23 27 27 C 1.38355 * 119.96917 * 0.27714 * 25 24 23 28 28 C 1.38211 * 119.98605 * 359.45324 * 27 25 24 29 29 H 1.08997 * 109.46570 * 175.86694 * 1 2 3 30 30 H 1.09001 * 109.46901 * 295.86583 * 1 2 3 31 31 H 1.08992 * 109.47133 * 55.87100 * 1 2 3 32 32 H 1.09003 * 109.46414 * 84.67540 * 7 6 4 33 33 H 1.08995 * 109.47385 * 204.67712 * 7 6 4 34 34 H 1.08999 * 109.46951 * 324.68125 * 7 6 4 35 35 H 1.09000 * 109.46892 * 210.00343 * 8 6 4 36 36 H 1.09010 * 109.46535 * 329.99963 * 8 6 4 37 37 H 0.96698 * 113.99833 * 60.00834 * 11 9 8 38 38 H 1.09003 * 109.46896 * 299.99880 * 12 9 8 39 39 H 1.09001 * 109.47141 * 59.99739 * 12 9 8 40 40 H 0.97005 * 120.00010 * 359.97438 * 13 12 9 41 41 H 0.96997 * 120.00109 * 179.97438 * 17 16 14 42 42 H 1.08000 * 119.99521 * 359.97438 * 23 22 2 43 43 H 1.07999 * 120.00351 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.00502 * 179.72044 * 27 25 24 45 45 H 1.07999 * 119.99643 * 180.27236 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 8 2.5107 -1.8208 -1.1369 6 7 1.9500 -0.1114 -2.4351 7 6 1.4483 1.2612 -2.5381 8 6 2.3622 -0.8329 -3.6417 9 6 1.1629 -1.5867 -4.2198 10 1 0.7349 -2.2319 -3.4525 11 8 0.1773 -0.6494 -4.6580 12 6 1.6195 -2.4387 -5.4058 13 7 0.4710 -3.1601 -5.9598 14 6 0.6382 -3.9908 -7.0355 15 1 1.6167 -4.1138 -7.4758 16 6 -0.4499 -4.6747 -7.5600 17 7 -1.6425 -4.5243 -7.0238 18 14 -0.2217 -5.8085 -9.0270 19 1 0.7424 -6.8824 -8.6773 20 1 -1.5271 -6.4152 -9.3914 21 1 0.3012 -5.0294 -10.1780 22 6 2.0324 -0.7105 1.2303 23 6 2.8272 -0.0384 2.1402 24 6 3.2878 -0.6894 3.2690 25 6 2.9538 -2.0140 3.4882 26 17 3.5314 -2.8321 4.9062 27 6 2.1635 -2.6879 2.5741 28 6 1.6989 -2.0343 1.4484 29 1 -0.3632 -1.0250 -0.0741 30 1 -0.3633 0.4483 0.9247 31 1 -0.3633 0.5765 -0.8506 32 1 2.2644 1.9608 -2.3569 33 1 1.0432 1.4261 -3.5364 34 1 0.6642 1.4179 -1.7973 35 1 2.7354 -0.1230 -4.3799 36 1 3.1501 -1.5426 -3.3892 37 1 0.4893 -0.0418 -5.3426 38 1 2.0474 -1.7936 -6.1732 39 1 2.3713 -3.1537 -5.0715 40 1 -0.4079 -3.0493 -5.5646 41 1 -2.4029 -5.0019 -7.3906 42 1 3.0882 0.9955 1.9688 43 1 3.9083 -0.1642 3.9799 44 1 1.9062 -3.7232 2.7423 45 1 1.0784 -2.5589 0.7370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507502850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = -53.906329 kcal Electronic energy + Delta-G solvation = -27061.726104 eV Core-core repulsion = 23105.469267 eV Total energy + Delta-G solvation = -3956.256837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71512 -39.22237 -37.53512 -36.71525 -35.31093 -34.25257 -33.97652 -31.35584 -31.31450 -29.94220 -29.08214 -26.90557 -25.85620 -24.42312 -23.10316 -22.92006 -21.59371 -21.16730 -19.21700 -17.43167 -17.27833 -17.13104 -16.61944 -16.08596 -15.60121 -15.56168 -15.09221 -14.84983 -14.45139 -14.33432 -13.87897 -13.84884 -13.69005 -13.49148 -13.40026 -12.97384 -12.90322 -12.56784 -12.40383 -12.30813 -12.11785 -11.95923 -11.69713 -11.54675 -11.45001 -11.29639 -11.03180 -10.93233 -10.79753 -10.68106 -10.20369 -9.97221 -9.75612 -9.61450 -9.21578 -8.87917 -8.82356 -8.53248 -6.90771 -5.73445 -3.02906 0.86206 1.08976 1.88834 2.52501 2.86089 3.42392 3.45203 3.49292 3.50693 4.23303 4.29706 4.56338 4.57332 4.64089 4.73420 4.82660 4.83047 4.94642 5.00640 5.11126 5.17104 5.20271 5.30470 5.36724 5.45082 5.47000 5.56925 5.60830 5.67099 5.72629 5.79837 5.88122 5.95416 5.98514 6.04484 6.23812 6.30315 6.43081 6.54833 6.55303 6.74517 7.26293 7.69531 8.00204 8.09097 8.44839 9.56130 10.14013 10.49907 11.48896 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.002218 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.286089 B =12623.133954 C =13783.039293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 H 0.101 0.899 4 C 0.517 3.483 5 O -0.528 6.528 6 N -0.605 5.605 7 C 0.072 3.928 8 C 0.086 3.914 9 C 0.088 3.912 10 H 0.099 0.901 11 O -0.550 6.550 12 C 0.126 3.874 13 N -0.725 5.725 14 C -0.243 4.243 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.066 4.066 23 C -0.101 4.101 24 C -0.116 4.116 25 C -0.034 4.034 26 Cl -0.077 7.077 27 C -0.112 4.112 28 C -0.065 4.065 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.366 0.634 38 H 0.019 0.981 39 H 0.027 0.973 40 H 0.389 0.611 41 H 0.256 0.744 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.478 16.072 21.211 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 H 0.119 0.881 4 C 0.304 3.696 5 O -0.404 6.404 6 N -0.338 5.338 7 C -0.070 4.070 8 C -0.038 4.038 9 C 0.027 3.973 10 H 0.117 0.883 11 O -0.354 6.354 12 C -0.003 4.003 13 N -0.370 5.370 14 C -0.374 4.374 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.067 4.067 23 C -0.119 4.119 24 C -0.135 4.135 25 C -0.060 4.060 26 Cl -0.048 7.048 27 C -0.131 4.131 28 C -0.083 4.083 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.213 0.787 38 H 0.037 0.963 39 H 0.044 0.956 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.486 14.993 21.687 27.697 hybrid contribution 0.308 -0.384 -1.091 1.196 sum 8.794 14.609 20.596 26.739 Atomic orbital electron populations 1.21888 0.91354 1.03812 1.03167 1.20277 0.98179 0.99962 0.90658 0.88069 1.20415 0.78583 0.86397 0.84240 1.90740 1.44284 1.19603 1.85747 1.47667 1.64646 1.15133 1.06327 1.22001 0.98987 0.81732 1.04329 1.22245 0.98404 0.97021 0.86091 1.22528 0.88337 0.89802 0.96608 0.88329 1.86613 1.40302 1.48927 1.59605 1.21215 0.92200 0.94058 0.92787 1.42225 1.06061 1.52227 1.36460 1.19174 0.94233 1.18163 1.05838 0.91341 1.24759 0.95481 1.00833 0.99843 1.69671 0.98886 1.46227 1.43080 0.86259 0.76605 0.80713 0.82539 1.21256 1.21653 1.21282 1.19465 0.97834 0.94490 0.94914 1.20945 0.97318 0.99990 0.93664 1.20938 1.01135 0.92889 0.98541 1.20953 1.00861 0.93670 0.90533 1.98367 1.87861 1.79227 1.39359 1.21078 0.97748 1.00541 0.93703 1.21009 0.98157 0.93645 0.95468 0.91428 0.91073 0.90746 0.92978 0.90065 0.90656 0.90176 0.88809 0.78729 0.96319 0.95559 0.77682 0.93456 0.85215 0.85055 0.84884 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.68 37.16 0.32 -0.85 16 2 C -0.07 -0.62 2.07 -92.92 -0.19 -0.82 16 3 H 0.10 0.65 7.22 -51.93 -0.37 0.28 16 4 C 0.52 6.45 6.84 -10.99 -0.08 6.38 16 5 O -0.53 -8.65 14.25 5.56 0.08 -8.57 16 6 N -0.61 -6.72 2.84 -181.57 -0.52 -7.23 16 7 C 0.07 0.54 9.63 59.85 0.58 1.12 16 8 C 0.09 1.08 5.07 -4.04 -0.02 1.06 16 9 C 0.09 1.43 3.30 -26.74 -0.09 1.34 16 10 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 11 O -0.55 -8.70 12.01 -35.23 -0.42 -9.12 16 12 C 0.13 2.53 5.92 -4.04 -0.02 2.50 16 13 N -0.72 -18.88 5.49 -59.91 -0.33 -19.21 16 14 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 18 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C -0.07 -0.67 4.54 -104.62 -0.47 -1.14 16 23 C -0.10 -0.86 9.67 -39.59 -0.38 -1.25 16 24 C -0.12 -1.04 9.83 -39.55 -0.39 -1.42 16 25 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 26 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 27 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 28 C -0.06 -0.73 7.88 -39.59 -0.31 -1.04 16 29 H 0.07 0.66 7.54 -51.93 -0.39 0.27 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.56 5.80 -51.93 -0.30 0.26 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.59 7.22 -51.93 -0.38 0.22 16 34 H 0.08 0.47 4.55 -51.93 -0.24 0.24 16 35 H 0.08 0.81 8.07 -51.93 -0.42 0.40 16 36 H 0.09 1.32 7.37 -51.92 -0.38 0.94 16 37 H 0.37 4.56 9.04 45.56 0.41 4.97 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.39 10.90 7.54 -40.82 -0.31 10.59 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 42 H 0.13 0.77 7.95 -52.49 -0.42 0.35 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.13 1.62 7.22 -52.49 -0.38 1.24 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -34.91 385.03 -8.81 -43.72 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.68 Total: 11.14 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.94 Total: -3.90 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.12 Total: -54.55 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.34 Total: -17.70 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.91 -8.81 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507502850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.187 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds