Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47063 * 2 1 4 4 C 1.50705 * 109.47067 * 240.00861 * 2 1 3 5 5 O 1.21275 * 119.99591 * 253.80450 * 4 2 1 6 6 N 1.34771 * 120.00167 * 73.80020 * 4 2 1 7 7 C 1.46505 * 120.00264 * 3.74392 * 6 4 2 8 8 C 1.46504 * 120.00274 * 183.74666 * 6 4 2 9 9 C 1.52991 * 109.47434 * 89.99946 * 8 6 4 10 10 H 1.09006 * 109.47453 * 305.00171 * 9 8 6 11 11 O 1.42899 * 109.47107 * 64.99939 * 9 8 6 12 12 C 1.52999 * 109.47425 * 185.00490 * 9 8 6 13 13 N 1.46497 * 109.47383 * 180.02562 * 12 9 8 14 14 C 1.36935 * 120.00529 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99543 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00517 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47066 * 59.99792 * 18 16 14 20 20 H 1.48499 * 109.46882 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46909 * 300.00077 * 18 16 14 22 22 C 1.50696 * 109.47286 * 120.00568 * 2 1 3 23 23 C 1.38242 * 119.98395 * 240.00072 * 22 2 1 24 24 C 1.38212 * 120.00822 * 179.97438 * 23 22 2 25 25 C 1.38351 * 119.99310 * 0.02562 * 24 23 22 26 26 Cl 1.73603 * 120.01674 * 180.02562 * 25 24 23 27 27 C 1.38355 * 119.96917 * 0.27714 * 25 24 23 28 28 C 1.38211 * 119.98605 * 359.45324 * 27 25 24 29 29 H 1.08997 * 109.46570 * 175.86694 * 1 2 3 30 30 H 1.09001 * 109.46901 * 295.86583 * 1 2 3 31 31 H 1.08992 * 109.47133 * 55.87100 * 1 2 3 32 32 H 1.09003 * 109.46414 * 84.67540 * 7 6 4 33 33 H 1.08995 * 109.47385 * 204.67712 * 7 6 4 34 34 H 1.08999 * 109.46951 * 324.68125 * 7 6 4 35 35 H 1.09000 * 109.46892 * 210.00343 * 8 6 4 36 36 H 1.09010 * 109.46535 * 329.99963 * 8 6 4 37 37 H 0.96698 * 113.99833 * 60.00834 * 11 9 8 38 38 H 1.09003 * 109.46896 * 299.99880 * 12 9 8 39 39 H 1.09001 * 109.47141 * 59.99739 * 12 9 8 40 40 H 0.97005 * 120.00010 * 359.97438 * 13 12 9 41 41 H 0.96997 * 120.00109 * 179.97438 * 17 16 14 42 42 H 1.08000 * 119.99521 * 359.97438 * 23 22 2 43 43 H 1.07999 * 120.00351 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.00502 * 179.72044 * 27 25 24 45 45 H 1.07999 * 119.99643 * 180.27236 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 8 2.5107 -1.8208 -1.1369 6 7 1.9500 -0.1114 -2.4351 7 6 1.4483 1.2612 -2.5381 8 6 2.3622 -0.8329 -3.6417 9 6 1.1629 -1.5867 -4.2198 10 1 0.7349 -2.2319 -3.4525 11 8 0.1773 -0.6494 -4.6580 12 6 1.6195 -2.4387 -5.4058 13 7 0.4710 -3.1601 -5.9598 14 6 0.6382 -3.9908 -7.0355 15 1 1.6167 -4.1138 -7.4758 16 6 -0.4499 -4.6747 -7.5600 17 7 -1.6425 -4.5243 -7.0238 18 14 -0.2217 -5.8085 -9.0270 19 1 0.7424 -6.8824 -8.6773 20 1 -1.5271 -6.4152 -9.3914 21 1 0.3012 -5.0294 -10.1780 22 6 2.0324 -0.7105 1.2303 23 6 2.8272 -0.0384 2.1402 24 6 3.2878 -0.6894 3.2690 25 6 2.9538 -2.0140 3.4882 26 17 3.5314 -2.8321 4.9062 27 6 2.1635 -2.6879 2.5741 28 6 1.6989 -2.0343 1.4484 29 1 -0.3632 -1.0250 -0.0741 30 1 -0.3633 0.4483 0.9247 31 1 -0.3633 0.5765 -0.8506 32 1 2.2644 1.9608 -2.3569 33 1 1.0432 1.4261 -3.5364 34 1 0.6642 1.4179 -1.7973 35 1 2.7354 -0.1230 -4.3799 36 1 3.1501 -1.5426 -3.3892 37 1 0.4893 -0.0418 -5.3426 38 1 2.0474 -1.7936 -6.1732 39 1 2.3713 -3.1537 -5.0715 40 1 -0.4079 -3.0493 -5.5646 41 1 -2.4029 -5.0019 -7.3906 42 1 3.0882 0.9955 1.9688 43 1 3.9083 -0.1642 3.9799 44 1 1.9062 -3.7232 2.7423 45 1 1.0784 -2.5589 0.7370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507502850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -78.161173 kcal Electronic energy + Delta-G solvation = -27062.777873 eV Core-core repulsion = 23105.469267 eV Total energy + Delta-G solvation = -3957.308606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58189 -40.06569 -38.80407 -37.49107 -36.42682 -35.83385 -34.98711 -33.22945 -32.04406 -31.15615 -30.06092 -27.83837 -27.18050 -25.47010 -24.52273 -23.80646 -22.85466 -22.30538 -20.09105 -19.25723 -18.24809 -18.08269 -17.70872 -17.09465 -16.73766 -16.44836 -16.37042 -16.25802 -15.74556 -15.36052 -15.12963 -14.87075 -14.67179 -14.44740 -14.31524 -14.21944 -14.07092 -13.70454 -13.50079 -13.26956 -13.01281 -12.93391 -12.82183 -12.72609 -12.49202 -12.44575 -12.23006 -12.21534 -12.05258 -11.97584 -11.83212 -11.77052 -11.21065 -10.98964 -10.68538 -9.96634 -9.58232 -9.50970 -9.03765 -7.96329 -5.26630 0.10764 0.35100 1.13526 1.45048 1.49165 1.55237 1.59685 2.01291 2.54155 2.67067 3.34619 3.47007 3.48397 3.58946 3.78300 3.84694 3.94728 4.04040 4.14121 4.18300 4.20658 4.33221 4.41087 4.46277 4.49397 4.54779 4.68332 4.71697 4.76435 4.84076 4.86327 4.90928 5.00496 5.03010 5.19160 5.20933 5.25321 5.33560 5.44416 5.53375 5.57417 5.82455 6.24175 6.40920 6.89466 7.17861 7.30653 8.06505 8.29761 9.26873 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.002218 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.286089 B =12623.133954 C =13783.039293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 H 0.140 0.860 4 C 0.506 3.494 5 O -0.578 6.578 6 N -0.603 5.603 7 C 0.064 3.936 8 C 0.096 3.904 9 C 0.107 3.893 10 H 0.062 0.938 11 O -0.559 6.559 12 C 0.123 3.877 13 N -0.741 5.741 14 C -0.250 4.250 15 H 0.077 0.923 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.978 3.022 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.273 1.273 22 C -0.076 4.076 23 C -0.094 4.094 24 C -0.116 4.116 25 C -0.044 4.044 26 Cl -0.075 7.075 27 C -0.128 4.128 28 C -0.084 4.084 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.384 0.616 38 H 0.041 0.959 39 H 0.019 0.981 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.131 0.869 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 19.032 21.239 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 H 0.157 0.843 4 C 0.295 3.705 5 O -0.458 6.458 6 N -0.335 5.335 7 C -0.077 4.077 8 C -0.028 4.028 9 C 0.046 3.954 10 H 0.080 0.920 11 O -0.366 6.366 12 C -0.005 4.005 13 N -0.384 5.384 14 C -0.382 4.382 15 H 0.095 0.905 16 C -0.270 4.270 17 N -0.620 5.620 18 Si 0.806 3.194 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.199 1.199 22 C -0.077 4.077 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.071 4.071 26 Cl -0.047 7.047 27 C -0.146 4.146 28 C -0.102 4.102 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.184 0.816 43 H 0.173 0.827 44 H 0.149 0.851 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.930 18.016 21.709 29.907 hybrid contribution -0.099 -1.262 -1.066 1.654 sum 9.831 16.754 20.644 28.346 Atomic orbital electron populations 1.21881 0.90861 1.02491 1.04657 1.20320 0.98385 1.01112 0.88256 0.84278 1.21136 0.77797 0.85976 0.85559 1.90720 1.46576 1.21870 1.86590 1.47779 1.64047 1.16340 1.05294 1.22303 1.00464 0.79789 1.05172 1.22005 0.95845 0.97420 0.87498 1.22146 0.89488 0.89565 0.94173 0.92023 1.86581 1.40582 1.49000 1.60388 1.21433 0.90290 0.94219 0.94514 1.42440 1.07006 1.52746 1.36166 1.19630 0.94499 1.17943 1.06109 0.90524 1.25654 0.95276 1.02957 1.03101 1.69845 0.99642 1.47666 1.44864 0.85156 0.76292 0.78687 0.79276 1.20551 1.22084 1.19881 1.19675 0.98194 0.94026 0.95768 1.21322 0.95806 1.01425 0.92615 1.21287 1.00785 0.92301 0.99070 1.21094 1.01034 0.94436 0.90534 1.98362 1.87781 1.79387 1.39122 1.21133 0.98573 1.00791 0.94145 1.20959 0.98968 0.94805 0.95517 0.94156 0.89020 0.89786 0.90134 0.89665 0.89324 0.86697 0.90573 0.76731 0.94153 0.96269 0.79370 0.93975 0.81611 0.82729 0.85065 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.68 71.98 0.62 -1.49 16 2 C -0.06 -0.96 2.07 -12.28 -0.03 -0.99 16 3 H 0.14 1.17 7.22 -2.39 -0.02 1.15 16 4 C 0.51 12.36 6.84 87.66 0.60 12.96 16 5 O -0.58 -19.75 14.25 -3.02 -0.04 -19.80 16 6 N -0.60 -12.35 2.84 -846.75 -2.40 -14.75 16 7 C 0.06 0.72 9.63 127.77 1.23 1.95 16 8 C 0.10 2.32 5.07 86.38 0.44 2.76 16 9 C 0.11 3.50 3.30 30.59 0.10 3.60 16 10 H 0.06 2.48 8.14 -2.38 -0.02 2.47 16 11 O -0.56 -17.17 12.01 -148.98 -1.79 -18.96 16 12 C 0.12 4.92 5.92 86.38 0.51 5.43 16 13 N -0.74 -39.24 5.49 -343.46 -1.89 -41.13 16 14 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 16 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 17 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 18 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.08 -1.45 4.54 -19.86 -0.09 -1.54 16 23 C -0.09 -1.35 9.67 22.26 0.22 -1.13 16 24 C -0.12 -1.82 9.83 22.29 0.22 -1.61 16 25 C -0.04 -0.88 6.32 22.32 0.14 -0.74 16 26 Cl -0.08 -1.40 28.96 -2.72 -0.08 -1.48 16 27 C -0.13 -2.88 9.83 22.29 0.22 -2.66 16 28 C -0.08 -2.01 7.88 22.26 0.18 -1.84 16 29 H 0.04 0.82 7.54 -2.39 -0.02 0.80 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.07 5.80 -2.39 -0.01 1.06 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.93 7.22 -2.39 -0.02 0.92 16 34 H 0.09 0.78 4.55 -2.39 -0.01 0.77 16 35 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 36 H 0.08 2.14 7.37 -2.38 -0.02 2.13 16 37 H 0.38 8.73 9.04 -74.06 -0.67 8.06 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.37 21.67 7.54 -92.70 -0.70 20.97 16 41 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.17 1.14 7.95 -2.91 -0.02 1.12 16 43 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.11 3.08 7.22 -2.91 -0.02 3.06 16 Total: -1.00 -78.83 385.03 1.43 -77.40 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.34 Total: 33.77 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.67 Total: -2.99 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -4.01 Total: -117.03 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.83 Total: -38.76 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -78.83 1.43 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507502850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.766 kcal (2) G-P(sol) polarization free energy of solvation -78.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds