Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47424 * 2 1 4 4 C 1.50709 * 109.47103 * 119.99580 * 2 1 3 5 5 O 1.21279 * 119.99677 * 119.99717 * 4 2 1 6 6 N 1.34769 * 120.00065 * 300.00202 * 4 2 1 7 7 C 1.46500 * 120.00092 * 359.97438 * 6 4 2 8 8 C 1.46493 * 120.00090 * 179.97438 * 6 4 2 9 9 C 1.52998 * 109.47280 * 90.00157 * 8 6 4 10 10 H 1.09002 * 109.46962 * 305.00369 * 9 8 6 11 11 O 1.42897 * 109.47486 * 64.99787 * 9 8 6 12 12 C 1.53001 * 109.47547 * 185.00271 * 9 8 6 13 13 N 1.46496 * 109.47419 * 179.97438 * 12 9 8 14 14 C 1.36932 * 120.00106 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99984 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99998 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47085 * 59.99919 * 18 16 14 20 20 H 1.48496 * 109.47404 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47005 * 300.00573 * 18 16 14 22 22 C 1.50696 * 109.47277 * 239.99441 * 2 1 3 23 23 C 1.38246 * 119.98618 * 120.00237 * 22 2 1 24 24 C 1.38216 * 120.01497 * 180.02562 * 23 22 2 25 25 C 1.38357 * 119.98603 * 359.97165 * 24 23 22 26 26 Cl 1.73599 * 120.01134 * 180.02562 * 25 24 23 27 27 C 1.38347 * 119.97107 * 0.28224 * 25 24 23 28 28 C 1.38217 * 119.98914 * 359.48757 * 27 25 24 29 29 H 1.09001 * 109.47132 * 300.00182 * 1 2 3 30 30 H 1.09003 * 109.46770 * 60.00235 * 1 2 3 31 31 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47690 * 89.99746 * 7 6 4 33 33 H 1.08994 * 109.47610 * 210.00313 * 7 6 4 34 34 H 1.09004 * 109.46950 * 329.99993 * 7 6 4 35 35 H 1.09009 * 109.47363 * 210.00067 * 8 6 4 36 36 H 1.09001 * 109.47070 * 329.99812 * 8 6 4 37 37 H 0.96701 * 114.00087 * 59.99826 * 11 9 8 38 38 H 1.09004 * 109.46574 * 300.00201 * 12 9 8 39 39 H 1.09000 * 109.47353 * 59.99309 * 12 9 8 40 40 H 0.96998 * 119.99709 * 0.02562 * 13 12 9 41 41 H 0.97000 * 119.99305 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99321 * 359.97438 * 23 22 2 43 43 H 1.08003 * 120.00776 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00661 * 179.71600 * 27 25 24 45 45 H 1.07996 * 119.99353 * 180.23044 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9407 3.6508 9 6 3.5425 -0.3488 4.0675 10 1 4.2347 -0.3941 3.2267 11 8 3.3631 1.0123 4.4638 12 6 4.1111 -1.1506 5.2399 13 7 5.4021 -0.5843 5.6385 14 6 6.1031 -1.1406 6.6750 15 1 5.7045 -1.9971 7.1983 16 6 7.3265 -0.6042 7.0523 17 7 7.8126 0.4394 6.4142 18 14 8.2832 -1.3635 8.4657 19 1 8.5953 -2.7801 8.1477 20 1 9.5479 -0.6119 8.6677 21 1 7.4672 -1.3027 9.7049 22 6 2.0324 -0.7105 -1.2303 23 6 2.8272 -0.0385 -2.1402 24 6 3.2878 -0.6894 -3.2691 25 6 2.9538 -2.0140 -3.4882 26 17 3.5326 -2.8324 -4.9056 27 6 2.1540 -2.6845 -2.5800 28 6 1.6979 -2.0339 -1.4490 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.1832 0.6442 2.6221 33 1 1.1228 1.4669 3.5085 34 1 1.0289 1.6003 1.7361 35 1 1.4765 -0.8151 4.4612 36 1 2.3153 -2.0020 3.4336 37 1 2.7578 1.1285 5.2090 38 1 3.4189 -1.1053 6.0807 39 1 4.2480 -2.1889 4.9377 40 1 5.7598 0.1852 5.1688 41 1 8.6673 0.8143 6.6782 42 1 3.0876 0.9957 -1.9692 43 1 3.9085 -0.1641 -3.9800 44 1 1.8892 -3.7171 -2.7528 45 1 1.0767 -2.5583 -0.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507502851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -51.186709 kcal Electronic energy + Delta-G solvation = -27028.303564 eV Core-core repulsion = 23072.164658 eV Total energy + Delta-G solvation = -3956.138905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73735 -39.22143 -37.52139 -36.70035 -35.40311 -34.25144 -33.95862 -31.35110 -31.31408 -30.01308 -28.96315 -27.01387 -25.82393 -24.43624 -23.10095 -22.91577 -21.60239 -21.14733 -19.28544 -17.44690 -17.24075 -17.14406 -16.57112 -16.09601 -15.83094 -15.39397 -15.07974 -14.83824 -14.43962 -14.25338 -13.99364 -13.83867 -13.69627 -13.47610 -13.45879 -12.98478 -12.90605 -12.64025 -12.48148 -12.22775 -12.09823 -11.97815 -11.67493 -11.50658 -11.48554 -11.27851 -11.02460 -10.92310 -10.78965 -10.67407 -10.19838 -9.97182 -9.74485 -9.61704 -9.21996 -8.86905 -8.80485 -8.52987 -6.89663 -5.72322 -3.01812 0.87908 1.09514 1.90477 2.54353 2.85201 3.42308 3.45869 3.49905 3.51413 4.20225 4.30959 4.54461 4.57534 4.64161 4.74043 4.78375 4.80782 4.98490 5.01483 5.09226 5.15561 5.18816 5.23244 5.33871 5.44830 5.44995 5.54534 5.57989 5.67783 5.70689 5.74903 5.79557 5.95614 5.99964 6.01548 6.24665 6.28442 6.42811 6.54863 6.55753 6.76031 7.26133 7.70325 8.01441 8.09772 8.45936 9.57153 10.15231 10.51085 11.50042 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.002319 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.640078 B =12070.350993 C =13540.871624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 H 0.107 0.893 4 C 0.515 3.485 5 O -0.526 6.526 6 N -0.605 5.605 7 C 0.077 3.923 8 C 0.087 3.913 9 C 0.087 3.913 10 H 0.100 0.900 11 O -0.551 6.551 12 C 0.127 3.873 13 N -0.725 5.725 14 C -0.243 4.243 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.061 4.061 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.034 4.034 26 Cl -0.076 7.076 27 C -0.112 4.112 28 C -0.071 4.071 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.366 0.634 38 H 0.019 0.981 39 H 0.027 0.973 40 H 0.389 0.611 41 H 0.256 0.744 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.891 0.711 -19.301 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.092 4.092 3 H 0.125 0.875 4 C 0.302 3.698 5 O -0.402 6.402 6 N -0.338 5.338 7 C -0.066 4.066 8 C -0.036 4.036 9 C 0.026 3.974 10 H 0.117 0.883 11 O -0.355 6.355 12 C -0.002 4.002 13 N -0.370 5.370 14 C -0.374 4.374 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.061 4.061 23 C -0.117 4.117 24 C -0.131 4.131 25 C -0.060 4.060 26 Cl -0.048 7.048 27 C -0.131 4.131 28 C -0.090 4.090 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.212 0.788 38 H 0.037 0.963 39 H 0.044 0.956 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.991 0.108 -19.841 28.166 hybrid contribution 0.478 -0.325 1.056 1.204 sum -19.513 -0.216 -18.785 27.086 Atomic orbital electron populations 1.22073 0.91897 1.03359 1.03700 1.20283 0.97862 1.00387 0.90687 0.87506 1.20434 0.80363 0.84737 0.84233 1.90758 1.37051 1.26214 1.86161 1.47665 1.51318 1.29215 1.05601 1.21998 0.93603 0.87127 1.03872 1.22228 0.96459 0.98424 0.86523 1.22539 0.94755 0.82151 0.97918 0.88258 1.86619 1.69557 1.25571 1.53722 1.21212 0.89637 0.95815 0.93559 1.42227 1.18182 1.36905 1.39672 1.19174 1.00117 1.10181 1.07941 0.91336 1.24764 0.97989 0.98300 0.99878 1.69678 1.20360 1.24794 1.43022 0.86257 0.79364 0.78366 0.82114 1.21259 1.21652 1.21283 1.19416 0.97629 0.94371 0.94729 1.20990 0.96904 1.00247 0.93517 1.20980 1.00760 0.92852 0.98517 1.20934 1.00755 0.93698 0.90655 1.98367 1.87849 1.79175 1.39369 1.21009 0.97865 1.00377 0.93806 1.20857 0.98770 0.93680 0.95647 0.90411 0.91201 0.91890 0.92546 0.90204 0.90985 0.90147 0.88869 0.78755 0.96331 0.95572 0.77677 0.93457 0.85040 0.84920 0.85019 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.64 37.16 0.32 -0.62 16 2 C -0.07 -0.63 2.10 -92.92 -0.19 -0.83 16 3 H 0.11 0.81 7.13 -51.93 -0.37 0.44 16 4 C 0.52 6.44 6.94 -10.98 -0.08 6.37 16 5 O -0.53 -8.77 14.69 5.56 0.08 -8.69 16 6 N -0.61 -6.67 2.84 -181.57 -0.52 -7.18 16 7 C 0.08 0.56 8.62 59.85 0.52 1.08 16 8 C 0.09 1.09 5.06 -4.05 -0.02 1.07 16 9 C 0.09 1.44 3.30 -26.73 -0.09 1.35 16 10 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 11 O -0.55 -8.89 11.91 -35.23 -0.42 -9.31 16 12 C 0.13 2.56 5.92 -4.04 -0.02 2.54 16 13 N -0.73 -19.11 5.49 -59.91 -0.33 -19.44 16 14 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 18 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.06 -0.62 4.40 -104.62 -0.46 -1.08 16 23 C -0.10 -0.94 9.67 -39.59 -0.38 -1.32 16 24 C -0.11 -1.09 9.83 -39.55 -0.39 -1.48 16 25 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 26 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 27 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 28 C -0.07 -0.76 7.93 -39.59 -0.31 -1.07 16 29 H 0.08 0.38 4.53 -51.93 -0.24 0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 32 H 0.06 0.30 6.95 -51.93 -0.36 -0.07 16 33 H 0.08 0.59 7.11 -51.93 -0.37 0.22 16 34 H 0.07 0.44 6.01 -51.93 -0.31 0.12 16 35 H 0.08 0.80 8.07 -51.92 -0.42 0.38 16 36 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.37 4.62 9.04 45.56 0.41 5.03 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.39 11.06 7.54 -40.82 -0.31 10.75 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.13 0.98 7.95 -52.48 -0.42 0.56 16 43 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.13 1.29 7.52 -52.49 -0.39 0.90 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -35.65 383.36 -8.83 -44.48 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.63 Total: 10.91 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.00 Total: -3.79 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.12 Total: -54.97 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.34 Total: -18.00 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.65 -8.83 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507502851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.708 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds