Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47424 * 2 1 4 4 C 1.50709 * 109.47103 * 119.99580 * 2 1 3 5 5 O 1.21279 * 119.99677 * 119.99717 * 4 2 1 6 6 N 1.34769 * 120.00065 * 300.00202 * 4 2 1 7 7 C 1.46500 * 120.00092 * 359.97438 * 6 4 2 8 8 C 1.46493 * 120.00090 * 179.97438 * 6 4 2 9 9 C 1.52998 * 109.47280 * 90.00157 * 8 6 4 10 10 H 1.09002 * 109.46962 * 305.00369 * 9 8 6 11 11 O 1.42897 * 109.47486 * 64.99787 * 9 8 6 12 12 C 1.53001 * 109.47547 * 185.00271 * 9 8 6 13 13 N 1.46496 * 109.47419 * 179.97438 * 12 9 8 14 14 C 1.36932 * 120.00106 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99984 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99998 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47085 * 59.99919 * 18 16 14 20 20 H 1.48496 * 109.47404 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47005 * 300.00573 * 18 16 14 22 22 C 1.50696 * 109.47277 * 239.99441 * 2 1 3 23 23 C 1.38246 * 119.98618 * 120.00237 * 22 2 1 24 24 C 1.38216 * 120.01497 * 180.02562 * 23 22 2 25 25 C 1.38357 * 119.98603 * 359.97165 * 24 23 22 26 26 Cl 1.73599 * 120.01134 * 180.02562 * 25 24 23 27 27 C 1.38347 * 119.97107 * 0.28224 * 25 24 23 28 28 C 1.38217 * 119.98914 * 359.48757 * 27 25 24 29 29 H 1.09001 * 109.47132 * 300.00182 * 1 2 3 30 30 H 1.09003 * 109.46770 * 60.00235 * 1 2 3 31 31 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47690 * 89.99746 * 7 6 4 33 33 H 1.08994 * 109.47610 * 210.00313 * 7 6 4 34 34 H 1.09004 * 109.46950 * 329.99993 * 7 6 4 35 35 H 1.09009 * 109.47363 * 210.00067 * 8 6 4 36 36 H 1.09001 * 109.47070 * 329.99812 * 8 6 4 37 37 H 0.96701 * 114.00087 * 59.99826 * 11 9 8 38 38 H 1.09004 * 109.46574 * 300.00201 * 12 9 8 39 39 H 1.09000 * 109.47353 * 59.99309 * 12 9 8 40 40 H 0.96998 * 119.99709 * 0.02562 * 13 12 9 41 41 H 0.97000 * 119.99305 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99321 * 359.97438 * 23 22 2 43 43 H 1.08003 * 120.00776 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00661 * 179.71600 * 27 25 24 45 45 H 1.07996 * 119.99353 * 180.23044 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9407 3.6508 9 6 3.5425 -0.3488 4.0675 10 1 4.2347 -0.3941 3.2267 11 8 3.3631 1.0123 4.4638 12 6 4.1111 -1.1506 5.2399 13 7 5.4021 -0.5843 5.6385 14 6 6.1031 -1.1406 6.6750 15 1 5.7045 -1.9971 7.1983 16 6 7.3265 -0.6042 7.0523 17 7 7.8126 0.4394 6.4142 18 14 8.2832 -1.3635 8.4657 19 1 8.5953 -2.7801 8.1477 20 1 9.5479 -0.6119 8.6677 21 1 7.4672 -1.3027 9.7049 22 6 2.0324 -0.7105 -1.2303 23 6 2.8272 -0.0385 -2.1402 24 6 3.2878 -0.6894 -3.2691 25 6 2.9538 -2.0140 -3.4882 26 17 3.5326 -2.8324 -4.9056 27 6 2.1540 -2.6845 -2.5800 28 6 1.6979 -2.0339 -1.4490 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.1832 0.6442 2.6221 33 1 1.1228 1.4669 3.5085 34 1 1.0289 1.6003 1.7361 35 1 1.4765 -0.8151 4.4612 36 1 2.3153 -2.0020 3.4336 37 1 2.7578 1.1285 5.2090 38 1 3.4189 -1.1053 6.0807 39 1 4.2480 -2.1889 4.9377 40 1 5.7598 0.1852 5.1688 41 1 8.6673 0.8143 6.6782 42 1 3.0876 0.9957 -1.9692 43 1 3.9085 -0.1641 -3.9800 44 1 1.8892 -3.7171 -2.7528 45 1 1.0767 -2.5583 -0.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507502851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -76.106191 kcal Electronic energy + Delta-G solvation = -27029.384154 eV Core-core repulsion = 23072.164658 eV Total energy + Delta-G solvation = -3957.219495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59779 -40.07011 -38.80193 -37.49481 -36.47837 -35.86821 -34.95171 -33.22764 -32.05750 -31.20520 -29.95349 -27.88078 -27.18399 -25.41131 -24.52694 -23.81754 -22.86105 -22.29884 -20.15141 -19.25746 -18.24734 -18.09504 -17.65993 -17.11426 -16.75029 -16.59863 -16.36351 -16.11348 -15.76572 -15.37808 -15.02561 -14.85488 -14.65687 -14.52051 -14.35333 -14.23877 -13.99030 -13.75014 -13.53431 -13.28042 -13.02106 -12.85372 -12.78878 -12.72557 -12.46201 -12.43180 -12.24398 -12.20058 -12.04662 -11.89874 -11.82755 -11.75852 -11.22929 -10.98814 -10.68319 -9.98336 -9.57831 -9.50586 -9.03753 -7.96220 -5.26610 0.11046 0.33957 1.13029 1.45087 1.49335 1.55437 1.62185 2.00336 2.54269 2.66210 3.34732 3.47053 3.48369 3.60990 3.74577 3.84656 3.93497 4.04775 4.17263 4.18174 4.20032 4.38215 4.38636 4.47183 4.49860 4.55606 4.67690 4.73017 4.77553 4.86237 4.90795 4.92598 4.99047 5.04293 5.19538 5.21569 5.24015 5.33132 5.44384 5.52342 5.55421 5.81333 6.24281 6.41091 6.89713 7.18447 7.30635 8.06578 8.29728 9.27073 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.002319 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.640078 B =12070.350993 C =13540.871624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 H 0.125 0.875 4 C 0.506 3.494 5 O -0.579 6.579 6 N -0.603 5.603 7 C 0.067 3.933 8 C 0.098 3.902 9 C 0.106 3.894 10 H 0.060 0.940 11 O -0.560 6.560 12 C 0.123 3.877 13 N -0.741 5.741 14 C -0.250 4.250 15 H 0.077 0.923 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.978 3.022 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.273 1.273 22 C -0.072 4.072 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.047 4.047 26 Cl -0.075 7.075 27 C -0.123 4.123 28 C -0.083 4.083 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.384 0.616 38 H 0.042 0.958 39 H 0.020 0.980 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.899 1.436 -18.771 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 H 0.143 0.857 4 C 0.295 3.705 5 O -0.458 6.458 6 N -0.334 5.334 7 C -0.074 4.074 8 C -0.026 4.026 9 C 0.045 3.955 10 H 0.078 0.922 11 O -0.367 6.367 12 C -0.004 4.004 13 N -0.384 5.384 14 C -0.382 4.382 15 H 0.095 0.905 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.806 3.194 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.198 1.198 22 C -0.073 4.073 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.074 4.074 26 Cl -0.046 7.046 27 C -0.141 4.141 28 C -0.101 4.101 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.081 0.836 -19.298 29.337 hybrid contribution 1.045 -0.548 0.871 1.467 sum -21.036 0.288 -18.426 27.967 Atomic orbital electron populations 1.22080 0.89513 1.03461 1.05356 1.20331 0.99690 1.00327 0.88133 0.85717 1.21143 0.79525 0.84261 0.85532 1.90734 1.39456 1.28636 1.86978 1.47765 1.51040 1.29986 1.04606 1.22322 0.94431 0.85874 1.04760 1.21997 0.94978 0.97322 0.88343 1.22160 0.96110 0.82212 0.95016 0.92179 1.86583 1.70428 1.24948 1.54710 1.21435 0.87703 0.95659 0.95630 1.42449 1.20205 1.36587 1.39182 1.19636 1.00413 1.10028 1.08104 0.90470 1.25665 0.99299 0.99135 1.02931 1.69854 1.20658 1.26572 1.44991 0.85149 0.77590 0.77439 0.79190 1.20542 1.22091 1.19836 1.19679 0.97733 0.94445 0.95406 1.21293 0.96408 1.01314 0.93230 1.21245 1.00752 0.92733 0.98978 1.21094 1.01171 0.94217 0.90903 1.98360 1.87837 1.79216 1.39231 1.21178 0.98060 1.00945 0.93929 1.20960 0.99217 0.94213 0.95748 0.88583 0.89658 0.92606 0.89632 0.89996 0.89429 0.86557 0.90464 0.76703 0.94065 0.96243 0.79416 0.93980 0.82911 0.83406 0.84219 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.64 71.98 0.62 -0.79 16 2 C -0.06 -1.03 2.10 -12.28 -0.03 -1.05 16 3 H 0.13 1.55 7.13 -2.39 -0.02 1.53 16 4 C 0.51 12.28 6.94 87.66 0.61 12.89 16 5 O -0.58 -19.80 14.69 -3.03 -0.04 -19.84 16 6 N -0.60 -12.16 2.84 -846.77 -2.40 -14.56 16 7 C 0.07 0.74 8.62 127.77 1.10 1.84 16 8 C 0.10 2.32 5.06 86.38 0.44 2.76 16 9 C 0.11 3.49 3.30 30.59 0.10 3.59 16 10 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 11 O -0.56 -17.41 11.91 -148.98 -1.77 -19.18 16 12 C 0.12 4.95 5.92 86.38 0.51 5.46 16 13 N -0.74 -39.51 5.49 -343.46 -1.89 -41.39 16 14 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 17 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 18 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.07 -1.43 4.40 -19.86 -0.09 -1.51 16 23 C -0.10 -1.89 9.67 22.27 0.22 -1.67 16 24 C -0.12 -2.23 9.83 22.29 0.22 -2.01 16 25 C -0.05 -0.99 6.32 22.32 0.14 -0.84 16 26 Cl -0.08 -1.46 28.96 -2.72 -0.08 -1.54 16 27 C -0.12 -2.57 9.83 22.29 0.22 -2.35 16 28 C -0.08 -1.78 7.93 22.27 0.18 -1.60 16 29 H 0.10 0.55 4.53 -2.39 -0.01 0.54 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.64 7.39 -2.39 -0.02 0.62 16 32 H 0.09 0.50 6.95 -2.39 -0.02 0.48 16 33 H 0.08 0.92 7.11 -2.39 -0.02 0.90 16 34 H 0.09 0.72 6.01 -2.38 -0.01 0.70 16 35 H 0.12 1.93 8.07 -2.38 -0.02 1.91 16 36 H 0.08 2.13 7.42 -2.39 -0.02 2.11 16 37 H 0.38 8.78 9.04 -74.06 -0.67 8.12 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.37 21.81 7.54 -92.71 -0.70 21.12 16 41 H 0.25 15.46 8.31 -92.71 -0.77 14.68 16 42 H 0.15 1.99 7.95 -2.91 -0.02 1.96 16 43 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 45 H 0.13 2.63 7.52 -2.91 -0.02 2.61 16 Total: -1.00 -79.33 383.36 1.33 -78.00 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.34 Total: 33.85 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.55 Total: -3.07 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -4.01 Total: -117.40 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.82 Total: -39.03 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -79.33 1.33 -78.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507502851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.896 kcal (2) G-P(sol) polarization free energy of solvation -79.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds