Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47221 * 2 1 4 4 C 1.50697 * 109.47002 * 120.00384 * 2 1 3 5 5 O 1.21283 * 120.00452 * 119.99869 * 4 2 1 6 6 N 1.34776 * 120.00123 * 299.99321 * 4 2 1 7 7 C 1.46503 * 119.99960 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00379 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.47243 * 89.99919 * 8 6 4 10 10 N 1.46500 * 109.47243 * 179.97438 * 9 8 6 11 11 C 1.34770 * 119.99879 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00245 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.00114 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47291 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99882 * 180.02562 * 14 13 11 16 16 H 1.07991 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99716 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99405 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00030 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47010 * 90.00027 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99849 * 19 17 15 22 22 H 1.48496 * 109.47434 * 330.00198 * 19 17 15 23 23 C 1.50702 * 109.46980 * 239.99880 * 2 1 3 24 24 C 1.34512 * 125.79146 * 120.00056 * 23 2 1 25 25 C 1.41376 * 106.84688 * 179.75198 * 24 23 2 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78962 * 299.98278 * 23 2 1 28 28 H 1.09005 * 109.46691 * 299.99819 * 1 2 3 29 29 H 1.09003 * 109.46908 * 59.99632 * 1 2 3 30 30 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47172 * 89.99544 * 7 6 4 32 32 H 1.08991 * 109.47477 * 209.99724 * 7 6 4 33 33 H 1.09001 * 109.46883 * 330.00088 * 7 6 4 34 34 H 1.09001 * 109.47088 * 210.00712 * 8 6 4 35 35 H 1.08998 * 109.46783 * 330.00193 * 8 6 4 36 36 H 1.09000 * 109.47352 * 300.00778 * 9 8 6 37 37 H 1.09001 * 109.46544 * 60.00196 * 9 8 6 38 38 H 0.96997 * 119.99907 * 0.02562 * 10 9 8 39 39 H 1.08993 * 109.46779 * 300.00367 * 13 11 10 40 40 H 1.08998 * 109.46703 * 59.99918 * 13 11 10 41 41 H 0.97009 * 119.99783 * 180.02562 * 18 17 15 42 42 H 1.08006 * 126.57585 * 359.97438 * 24 23 2 43 43 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 44 44 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9404 3.6507 9 6 3.5432 -0.3475 4.0668 10 7 4.0317 -1.0374 5.2634 11 6 5.2090 -0.6804 5.8137 12 8 5.8639 0.2124 5.3186 13 6 5.7118 -1.3905 7.0442 14 16 7.3060 -0.6890 7.5365 15 6 7.6495 -1.6759 8.9552 16 1 6.9506 -2.4391 9.2642 17 6 8.8183 -1.4725 9.6757 18 7 9.0746 -2.2095 10.7357 19 14 10.0275 -0.1530 9.1408 20 1 9.6873 1.1296 9.8073 21 1 11.4040 -0.5592 9.5220 22 1 9.9524 0.0195 7.6678 23 6 2.0323 -0.7104 -1.2305 24 6 2.8089 -0.1721 -2.1878 25 6 3.0430 -1.1866 -3.1441 26 6 2.3885 -2.2820 -2.7183 27 8 1.7808 -1.9887 -1.5571 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.1837 0.6427 2.6225 32 1 1.1219 1.4664 3.5085 33 1 1.0274 1.5996 1.7360 34 1 1.4776 -0.8152 4.4613 35 1 2.3170 -2.0016 3.4336 36 1 4.2611 -0.4727 3.2562 37 1 3.4218 0.7137 4.2839 38 1 3.5078 -1.7512 5.6595 39 1 4.9936 -1.2656 7.8545 40 1 5.8336 -2.4516 6.8270 41 1 9.8913 -2.0671 11.2395 42 1 3.1847 0.8400 -2.2180 43 1 3.6321 -1.0985 -4.0450 44 1 2.3605 -3.2368 -3.2223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527937726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -48.506376 kcal Electronic energy + Delta-G solvation = -26167.649630 eV Core-core repulsion = 22213.670659 eV Total energy + Delta-G solvation = -3953.978971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.87027 -40.50603 -39.20660 -36.40927 -35.17863 -34.11716 -33.12231 -32.43041 -30.64817 -29.11753 -28.29461 -27.23695 -25.61767 -24.92124 -23.21449 -22.04193 -21.10877 -20.53584 -19.56443 -17.90392 -17.71653 -17.50178 -16.80458 -16.43608 -16.20785 -15.86150 -15.54525 -15.32195 -14.94701 -14.76034 -14.50646 -14.21742 -13.88492 -13.67097 -13.39622 -13.23498 -13.07906 -12.96904 -12.94482 -12.79264 -12.75154 -12.41023 -12.21090 -12.03521 -11.82121 -11.48354 -11.25939 -10.99968 -10.61309 -10.22819 -10.11880 -9.85479 -9.57706 -9.17679 -9.03294 -8.97408 -8.75866 -8.49291 -6.91008 -6.28106 -3.99762 1.42877 2.16941 2.26269 2.44967 2.68837 2.84450 2.97374 3.33154 3.38925 3.51877 3.69989 3.96651 4.07139 4.34139 4.41467 4.46567 4.58658 4.62423 4.68425 4.75470 4.78456 4.84206 4.91768 5.02267 5.10925 5.12629 5.16371 5.20864 5.32340 5.51335 5.53110 5.59714 5.62790 5.71932 5.77810 5.80441 6.00004 6.02859 6.20774 6.48708 6.83471 6.87887 7.57356 7.71843 7.94989 8.42549 8.47906 9.18080 10.81071 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.001867 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.568353 B =14991.837395 C =15617.358742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.027 4.027 3 H 0.126 0.874 4 C 0.516 3.484 5 O -0.515 6.515 6 N -0.613 5.613 7 C 0.071 3.929 8 C 0.106 3.894 9 C 0.108 3.892 10 N -0.735 5.735 11 C 0.532 3.468 12 O -0.519 6.519 13 C -0.123 4.123 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.008 3.992 24 C -0.204 4.204 25 C -0.216 4.216 26 C -0.036 4.036 27 O -0.161 6.161 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.839 5.222 -24.892 34.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.048 4.048 3 H 0.144 0.856 4 C 0.303 3.697 5 O -0.389 6.389 6 N -0.347 5.347 7 C -0.072 4.072 8 C -0.018 4.018 9 C -0.018 4.018 10 N -0.390 5.390 11 C 0.318 3.682 12 O -0.393 6.393 13 C -0.274 4.274 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.114 4.114 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.043 4.043 24 C -0.223 4.223 25 C -0.235 4.235 26 C -0.104 4.104 27 O -0.056 6.056 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.234 0.766 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -22.424 5.939 -25.458 34.442 hybrid contribution -0.156 -0.780 0.632 1.016 sum -22.580 5.160 -24.826 33.953 Atomic orbital electron populations 1.22093 0.91258 1.04021 1.04097 1.19850 0.98312 0.99179 0.87433 0.85646 1.20493 0.80282 0.84791 0.84117 1.90786 1.36495 1.25637 1.86023 1.47643 1.51784 1.29894 1.05429 1.22093 0.94499 0.86867 1.03747 1.21606 0.94953 0.98358 0.86847 1.21570 0.95153 0.96897 0.88161 1.45787 1.22959 1.40216 1.30033 1.20285 0.80002 0.83157 0.84785 1.90704 1.55866 1.30182 1.62534 1.23273 1.03271 1.03532 0.97330 1.84799 1.19001 1.50883 1.36904 1.22316 1.10491 1.22559 1.11497 0.89358 1.24719 0.97027 0.95798 0.93822 1.69941 1.26069 1.38858 1.16803 0.86728 0.80809 0.82132 0.82148 1.19218 1.19940 1.15916 1.21465 1.02412 0.82946 0.97473 1.21556 1.03267 1.01412 0.96095 1.21793 1.05532 0.93561 1.02585 1.24054 0.98882 1.00793 0.86682 1.84020 1.59107 1.27493 1.35000 0.89991 0.90749 0.91430 0.91645 0.90345 0.90508 0.89492 0.88961 0.91246 0.91498 0.76593 0.88417 0.88357 0.91951 0.83466 0.83416 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 8.81 37.16 0.33 -0.41 16 2 C -0.03 -0.19 2.33 -92.92 -0.22 -0.41 16 3 H 0.13 0.59 7.36 -51.93 -0.38 0.21 16 4 C 0.52 5.27 7.07 -10.99 -0.08 5.19 16 5 O -0.52 -7.71 15.38 -1.29 -0.02 -7.73 16 6 N -0.61 -4.68 2.87 -181.57 -0.52 -5.20 16 7 C 0.07 0.26 8.80 59.85 0.53 0.78 16 8 C 0.11 0.88 5.52 -4.04 -0.02 0.86 16 9 C 0.11 1.25 6.00 -4.04 -0.02 1.23 16 10 N -0.73 -9.47 5.56 -60.29 -0.33 -9.80 16 11 C 0.53 9.64 7.85 -10.99 -0.09 9.56 16 12 O -0.52 -11.51 15.86 5.55 0.09 -11.42 16 13 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 14 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 15 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 16 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 17 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 19 Si 0.86 21.99 27.74 -169.99 -4.71 17.27 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 23 C 0.01 0.08 5.20 -35.62 -0.19 -0.10 16 24 C -0.20 -1.89 10.78 -39.71 -0.43 -2.31 16 25 C -0.22 -1.89 10.91 -39.70 -0.43 -2.32 16 26 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 27 O -0.16 -1.81 10.35 -1.16 -0.01 -1.82 16 28 H 0.08 0.21 4.53 -51.93 -0.24 -0.03 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.14 6.95 -51.93 -0.36 -0.23 16 32 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.08 0.16 6.01 -51.93 -0.31 -0.15 16 34 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 3.84 8.47 -40.82 -0.35 3.50 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -39.56 384.53 -7.01 -46.56 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.24 Total: 0.13 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.17 Total: -2.20 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.08 Total: -40.94 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.06 Total: -20.98 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.56 -7.01 -46.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527937726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.943 kcal (2) G-P(sol) polarization free energy of solvation -39.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds