Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.46992 * 269.72101 * 8 6 4 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 6 11 11 C 1.34776 * 120.00347 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00079 * 180.02562 * 11 10 9 14 14 S 1.81006 * 109.47235 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00082 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99670 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00118 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47120 * 120.00002 * 19 17 15 22 22 H 1.48504 * 109.46688 * 240.00040 * 19 17 15 23 23 C 1.50690 * 109.47465 * 120.00537 * 2 1 3 24 24 C 1.34516 * 125.78920 * 240.00172 * 23 2 1 25 25 C 1.41381 * 106.83856 * 179.97438 * 24 23 2 26 26 C 1.34506 * 106.84533 * 359.97438 * 25 24 23 27 27 O 1.34301 * 108.41967 * 359.74218 * 26 25 24 28 28 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 32 32 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 33 33 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 34 34 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 35 35 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 36 36 H 1.09000 * 109.47214 * 300.00285 * 9 8 6 37 37 H 1.09008 * 109.47142 * 59.99450 * 9 8 6 38 38 H 0.97001 * 119.99484 * 0.02562 * 10 9 8 39 39 H 1.09000 * 109.47543 * 300.00434 * 13 11 10 40 40 H 1.09000 * 109.46926 * 60.00402 * 13 11 10 41 41 H 0.96991 * 120.00304 * 179.97438 * 18 17 15 42 42 H 1.07999 * 126.58225 * 359.95367 * 24 23 2 43 43 H 1.08010 * 126.57829 * 180.02562 * 25 24 23 44 44 H 1.08006 * 125.79523 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5392 -0.3441 -4.0716 10 7 4.0273 -1.0353 -5.2675 11 6 5.2021 -0.6756 -5.8214 12 8 5.8554 0.2201 -5.3296 13 6 5.7039 -1.3862 -7.0519 14 16 7.2948 -0.6806 -7.5496 15 6 7.6370 -1.6679 -8.9683 16 1 6.9389 -2.4329 -9.2750 17 6 8.8036 -1.4626 -9.6917 18 7 9.6546 -0.5306 -9.3176 19 14 9.1661 -2.5088 -11.1962 20 1 8.0605 -3.4783 -11.4030 21 1 9.2877 -1.6339 -12.3899 22 1 10.4387 -3.2463 -10.9912 23 6 2.0324 -0.7105 1.2303 24 6 2.8090 -0.1721 2.1876 25 6 3.0379 -1.1849 3.1471 26 6 2.3871 -2.2815 2.7191 27 8 1.7749 -1.9865 1.5607 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.1874 0.6358 -2.6194 32 1 1.0224 1.5985 -1.7375 33 1 1.1130 1.4628 -3.5100 34 1 2.3200 -2.0011 -3.4322 35 1 1.4741 -0.8191 -4.4598 36 1 3.4138 0.7164 -4.2902 37 1 4.2596 -0.4656 -3.2626 38 1 3.5046 -1.7514 -5.6610 39 1 5.8297 -2.4466 -6.8333 40 1 4.9834 -1.2649 -7.8607 41 1 10.4700 -0.3874 -9.8228 42 1 3.1857 0.8397 2.2174 43 1 3.6225 -1.0952 4.0508 44 1 2.3577 -3.2359 3.2238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527937727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -48.691734 kcal Electronic energy + Delta-G solvation = -26109.852081 eV Core-core repulsion = 22155.865072 eV Total energy + Delta-G solvation = -3953.987009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.84549 -40.46506 -39.08392 -36.35814 -35.12691 -34.04397 -33.09509 -32.41886 -30.54472 -29.05727 -28.21518 -27.19637 -25.50026 -24.86424 -23.14914 -22.01577 -21.06630 -20.43078 -19.52210 -17.86726 -17.68774 -17.46911 -16.74153 -16.37011 -16.16109 -15.79027 -15.46381 -15.24308 -14.79701 -14.72289 -14.48543 -14.15602 -13.89118 -13.69479 -13.32555 -13.14927 -13.05289 -12.93512 -12.91343 -12.71751 -12.54972 -12.34783 -12.09436 -11.99406 -11.78815 -11.40056 -11.06149 -11.00955 -10.75403 -10.19647 -10.08742 -9.80236 -9.45949 -9.12537 -9.06989 -8.90586 -8.73205 -8.21970 -6.48887 -6.20774 -3.91199 1.45571 2.20907 2.29855 2.49639 2.72070 3.10372 3.11714 3.22401 3.29809 3.35881 3.77921 4.00237 4.10153 4.21217 4.44419 4.49960 4.64332 4.66385 4.72661 4.81120 4.86620 4.94442 5.05108 5.14400 5.16508 5.18040 5.21719 5.24094 5.53946 5.55873 5.62328 5.64869 5.66681 5.79496 5.83007 5.90788 6.06740 6.15169 6.23415 6.58738 6.87426 6.90473 7.60887 7.68271 7.75850 8.36506 8.61294 9.24614 10.86750 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.001779 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.313334 B =15736.637374 C =16321.921600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.027 4.027 3 H 0.126 0.874 4 C 0.516 3.484 5 O -0.516 6.516 6 N -0.613 5.613 7 C 0.071 3.929 8 C 0.106 3.894 9 C 0.108 3.892 10 N -0.737 5.737 11 C 0.533 3.467 12 O -0.517 6.517 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.008 3.992 24 C -0.204 4.204 25 C -0.215 4.215 26 C -0.036 4.036 27 O -0.162 6.162 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.800 1.487 21.338 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.048 4.048 3 H 0.144 0.856 4 C 0.303 3.697 5 O -0.390 6.390 6 N -0.347 5.347 7 C -0.072 4.072 8 C -0.017 4.017 9 C -0.018 4.018 10 N -0.392 5.392 11 C 0.319 3.681 12 O -0.390 6.390 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.503 5.503 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.043 4.043 24 C -0.223 4.223 25 C -0.235 4.235 26 C -0.104 4.104 27 O -0.057 6.057 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -23.339 2.356 22.021 32.174 hybrid contribution -0.516 -1.859 -1.511 2.451 sum -23.856 0.497 20.510 31.464 Atomic orbital electron populations 1.22096 0.91285 1.03996 1.04099 1.19853 0.98286 0.99204 0.87447 0.85625 1.20487 0.80298 0.84779 0.84116 1.90784 1.36512 1.25651 1.86023 1.47640 1.51625 1.30025 1.05442 1.22092 0.94361 0.86970 1.03772 1.21608 0.95056 0.98295 0.86775 1.21553 0.95077 0.96877 0.88277 1.45833 1.23332 1.39995 1.30075 1.20311 0.79836 0.83186 0.84770 1.90705 1.55757 1.29967 1.62610 1.23526 1.06051 1.03590 0.97163 1.85413 1.14897 1.48262 1.34866 1.22911 1.09347 1.22493 1.13525 0.90846 1.25003 0.95070 0.95618 0.97980 1.70027 1.10429 1.30711 1.39125 0.86106 0.78367 0.79683 0.81270 1.19615 1.20575 1.20570 1.21463 1.02314 0.83041 0.97438 1.21559 1.03353 1.01441 0.95964 1.21792 1.05669 0.93516 1.02486 1.24043 0.98893 1.00747 0.86752 1.84015 1.58709 1.27696 1.35246 0.90771 0.89970 0.91454 0.91691 0.90505 0.90327 0.89013 0.89566 0.91540 0.91304 0.76777 0.89127 0.89149 0.92241 0.83451 0.83420 0.78156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 8.81 37.16 0.33 -0.45 16 2 C -0.03 -0.20 2.33 -92.92 -0.22 -0.42 16 3 H 0.13 0.64 7.37 -51.93 -0.38 0.25 16 4 C 0.52 5.45 7.07 -10.98 -0.08 5.37 16 5 O -0.52 -7.91 15.39 -0.75 -0.01 -7.92 16 6 N -0.61 -4.92 2.87 -181.57 -0.52 -5.44 16 7 C 0.07 0.28 8.80 59.85 0.53 0.81 16 8 C 0.11 0.93 5.53 -4.04 -0.02 0.91 16 9 C 0.11 1.33 6.00 -4.04 -0.02 1.30 16 10 N -0.74 -10.07 5.56 -60.30 -0.33 -10.40 16 11 C 0.53 10.22 7.85 -10.99 -0.09 10.13 16 12 O -0.52 -12.12 15.86 5.56 0.09 -12.03 16 13 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 16 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 19 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.01 0.09 5.19 -35.63 -0.19 -0.10 16 24 C -0.20 -1.94 10.78 -39.70 -0.43 -2.37 16 25 C -0.22 -1.93 10.91 -39.71 -0.43 -2.37 16 26 C -0.04 -0.33 12.09 29.41 0.36 0.03 16 27 O -0.16 -1.85 10.36 -0.60 -0.01 -1.86 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.23 4.51 -51.93 -0.23 -0.01 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.15 6.95 -51.93 -0.36 -0.21 16 32 H 0.08 0.19 6.01 -51.93 -0.31 -0.12 16 33 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 34 H 0.09 0.93 7.41 -51.93 -0.38 0.55 16 35 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.20 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -40.01 387.22 -7.50 -47.51 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.21 Total: 0.43 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 0.16 Total: -3.13 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.12 Total: -41.51 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.07 Total: -21.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.01 -7.50 -47.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527937727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.180 kcal (2) G-P(sol) polarization free energy of solvation -40.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds