Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47276 * 2 1 4 4 C 1.53000 * 109.47164 * 119.99334 * 2 1 3 5 5 C 1.50695 * 109.47413 * 295.00509 * 4 2 1 6 6 C 1.38237 * 120.00556 * 264.72107 * 5 4 2 7 7 C 1.38215 * 120.01508 * 179.76793 * 6 5 4 8 8 C 1.38264 * 120.02470 * 0.50776 * 7 6 5 9 9 C 1.38197 * 120.01419 * 359.74568 * 8 7 6 10 10 C 1.38335 * 120.00953 * 84.99411 * 5 4 2 11 11 Cl 1.73595 * 120.01164 * 359.95965 * 10 5 4 12 12 C 1.50699 * 109.47247 * 239.99515 * 2 1 3 13 13 O 1.21286 * 119.99921 * 239.99729 * 12 2 1 14 14 N 1.34774 * 119.99902 * 60.00211 * 12 2 1 15 15 C 1.46505 * 119.99861 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46985 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.47159 * 64.99675 * 16 15 14 18 18 C 1.52999 * 109.47264 * 184.99674 * 16 15 14 19 19 O 1.42903 * 109.46807 * 54.99742 * 18 16 15 20 20 N 1.46498 * 109.47167 * 304.99505 * 16 15 14 21 21 C 1.36935 * 120.00239 * 154.99975 * 20 16 15 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 16 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 16 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09007 * 109.47382 * 60.00743 * 1 2 3 30 30 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47225 * 300.00524 * 1 2 3 32 32 H 1.09010 * 109.47053 * 55.00393 * 4 2 1 33 33 H 1.08999 * 109.47778 * 174.99842 * 4 2 1 34 34 H 1.08000 * 119.99259 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.99344 * 180.23338 * 7 6 5 36 36 H 1.08007 * 119.99769 * 179.77221 * 8 7 6 37 37 H 1.08004 * 120.00327 * 180.02562 * 9 8 7 38 38 H 0.96994 * 120.00036 * 359.97438 * 14 12 2 39 39 H 1.08996 * 109.47079 * 59.99484 * 15 14 12 40 40 H 1.09001 * 109.46574 * 299.99257 * 15 14 12 41 41 H 1.08997 * 109.47298 * 174.99526 * 18 16 15 42 42 H 1.08997 * 109.46949 * 294.99894 * 18 16 15 43 43 H 0.96702 * 113.99897 * 179.97438 * 19 18 16 44 44 H 0.97004 * 119.99747 * 335.00715 * 20 16 15 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 6 2.5261 0.9555 3.0433 7 6 2.1588 1.6729 4.1661 8 6 0.9102 1.4850 4.7293 9 6 0.0266 0.5834 4.1668 10 6 0.3918 -0.1312 3.0397 11 17 -0.7177 -1.2635 2.3322 12 6 2.0323 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 2.1947 -0.9412 -3.6506 16 6 1.6854 -0.2196 -4.8999 17 1 2.1208 0.7787 -4.9458 18 6 2.0897 -1.0100 -6.1460 19 8 1.6172 -2.3538 -6.0316 20 7 0.2254 -0.1134 -4.8414 21 6 -0.4163 0.8860 -5.5230 22 1 0.1539 1.5957 -6.1041 23 6 -1.7996 0.9870 -5.4672 24 7 -2.4949 0.1187 -4.7635 25 14 -2.6750 2.3498 -6.3976 26 1 -4.1398 2.2347 -6.1819 27 1 -2.2039 3.6685 -5.9030 28 1 -2.3772 2.2297 -7.8474 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -1.7198 1.2953 33 1 3.1263 -0.7994 1.2058 34 1 3.5030 1.0997 2.6061 35 1 2.8490 2.3774 4.6063 36 1 0.6250 2.0432 5.6089 37 1 -0.9488 0.4371 4.6067 38 1 1.1488 0.5383 -2.5436 39 1 1.8310 -1.9687 -3.6504 40 1 3.2847 -0.9415 -3.6507 41 1 1.6519 -0.5449 -7.0292 42 1 3.1758 -1.0133 -6.2375 43 1 1.8376 -2.9140 -6.7884 44 1 -0.2867 -0.7510 -4.3197 45 1 -2.0404 -0.5892 -4.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571442025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -63.643873 kcal Electronic energy + Delta-G solvation = -27374.143130 eV Core-core repulsion = 23417.464041 eV Total energy + Delta-G solvation = -3956.679088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13826 -39.22855 -37.25915 -36.57752 -35.12301 -34.83059 -33.69175 -31.65229 -31.06086 -30.65386 -28.04046 -26.78097 -25.57011 -23.66383 -23.25880 -22.77471 -21.24193 -20.26409 -19.41264 -17.71713 -17.38378 -16.76898 -16.69509 -16.04570 -15.84853 -15.40351 -15.19826 -14.75861 -14.19967 -14.11612 -14.05570 -13.76262 -13.67280 -13.40947 -13.33956 -12.98499 -12.85733 -12.48081 -12.20402 -11.88901 -11.71318 -11.64271 -11.51084 -11.41874 -11.08356 -10.95491 -10.84191 -10.76736 -10.43417 -10.31674 -10.03287 -9.54912 -9.42995 -9.19218 -9.11689 -8.98459 -8.79920 -8.60362 -7.10498 -6.13761 -3.15325 0.91637 1.01288 2.03125 2.96280 3.33613 3.47712 3.50575 3.61204 3.68769 4.49366 4.53668 4.61206 4.71261 4.85894 4.87409 4.94803 5.05937 5.12838 5.18326 5.33445 5.41605 5.45211 5.50203 5.55012 5.61995 5.71157 5.83699 5.91927 5.94056 5.96417 5.97364 5.99303 6.14378 6.16352 6.25784 6.30145 6.40651 6.43309 6.55510 6.67219 6.89042 7.72970 7.93412 8.13310 8.58128 8.71906 9.16464 10.03277 10.18977 11.33703 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003020 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.199674 B = 9267.970434 C =10515.214343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.066 4.066 5 C -0.066 4.066 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.110 4.110 10 C -0.033 4.033 11 Cl -0.058 7.058 12 C 0.516 3.484 13 O -0.554 6.554 14 N -0.713 5.713 15 C 0.117 3.883 16 C 0.171 3.829 17 H 0.066 0.934 18 C 0.060 3.940 19 O -0.562 6.562 20 N -0.724 5.724 21 C -0.340 4.340 22 H 0.063 0.937 23 C -0.039 4.039 24 N -0.937 5.937 25 Si 1.078 2.922 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.408 0.592 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.027 0.973 43 H 0.364 0.636 44 H 0.372 0.628 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 2.406 15.964 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 H 0.112 0.888 4 C -0.104 4.104 5 C -0.067 4.067 6 C -0.124 4.124 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.129 4.129 10 C -0.060 4.060 11 Cl -0.029 7.029 12 C 0.301 3.699 13 O -0.433 6.433 14 N -0.364 5.364 15 C -0.007 4.007 16 C 0.060 3.940 17 H 0.084 0.916 18 C -0.022 4.022 19 O -0.365 6.365 20 N -0.367 5.367 21 C -0.471 4.471 22 H 0.081 0.919 23 C -0.238 4.238 24 N -0.581 5.581 25 Si 0.909 3.091 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.245 0.755 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.209 0.791 44 H 0.206 0.794 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.858 2.670 16.053 18.528 hybrid contribution 1.243 -0.683 -0.401 1.474 sum 10.101 1.987 15.652 18.734 Atomic orbital electron populations 1.22230 0.92233 1.03295 1.03062 1.21219 0.98283 1.00376 0.92293 0.88762 1.20477 1.02248 0.98661 0.88978 1.19830 0.92275 0.97469 0.97140 1.21076 0.99539 0.95697 0.96087 1.21238 0.96637 0.99364 0.96059 1.21101 0.93832 0.98211 1.00217 1.21080 1.00567 0.96371 0.94834 1.20902 0.92007 0.96467 0.96624 1.98396 1.61695 1.59926 1.82872 1.20491 0.80063 0.84551 0.84758 1.90657 1.38931 1.26624 1.87077 1.46011 1.52905 1.32291 1.05222 1.21545 0.97820 0.97380 0.83966 1.20520 0.87143 0.95755 0.90552 0.91644 1.23021 0.95037 0.83230 1.00902 1.86553 1.81708 1.22164 1.46092 1.42358 0.99669 1.35103 1.59538 1.20001 0.92564 1.07220 1.27267 0.91859 1.25724 0.92988 1.03592 1.01454 1.70863 1.37385 1.16956 1.32939 0.83270 0.76388 0.74374 0.75048 1.21055 1.22265 1.22393 0.91646 0.91545 0.91354 0.89484 0.89775 0.85080 0.85493 0.85286 0.84991 0.75521 0.90777 0.92150 0.93285 0.95446 0.79071 0.79433 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.32 37.16 0.27 -1.87 16 2 C -0.10 -1.36 2.71 -91.77 -0.25 -1.61 16 3 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.07 -0.83 3.97 -27.89 -0.11 -0.94 16 5 C -0.07 -0.74 4.86 -104.59 -0.51 -1.24 16 6 C -0.11 -0.98 9.68 -39.59 -0.38 -1.37 16 7 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 8 C -0.12 -0.93 10.05 -39.59 -0.40 -1.32 16 9 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 10 C -0.03 -0.37 5.18 -39.50 -0.20 -0.58 16 11 Cl -0.06 -0.71 23.12 -51.86 -1.20 -1.91 16 12 C 0.52 8.66 7.15 -10.99 -0.08 8.58 16 13 O -0.55 -10.87 15.92 5.55 0.09 -10.78 16 14 N -0.71 -12.24 5.28 -60.29 -0.32 -12.55 16 15 C 0.12 2.12 5.12 -4.04 -0.02 2.10 16 16 C 0.17 3.30 2.84 -67.93 -0.19 3.11 16 17 H 0.07 1.22 8.08 -51.93 -0.42 0.81 16 18 C 0.06 1.05 6.86 37.16 0.25 1.30 16 19 O -0.56 -10.16 12.64 -35.23 -0.45 -10.60 16 20 N -0.72 -17.21 4.51 -53.43 -0.24 -17.45 16 21 C -0.34 -9.02 9.93 -15.06 -0.15 -9.17 16 22 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 23 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 24 N -0.94 -28.23 13.70 55.49 0.76 -27.47 16 25 Si 1.08 25.13 29.92 -169.99 -5.09 20.05 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.30 -6.53 7.11 56.52 0.40 -6.12 16 28 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.06 1.01 7.56 -51.93 -0.39 0.62 16 30 H 0.07 1.01 6.73 -51.93 -0.35 0.66 16 31 H 0.07 0.90 5.29 -51.93 -0.27 0.62 16 32 H 0.09 1.21 7.13 -51.92 -0.37 0.84 16 33 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.41 7.09 7.55 -40.82 -0.31 6.78 16 39 H 0.07 1.51 7.39 -51.93 -0.38 1.13 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.36 4.77 9.12 45.56 0.42 5.19 16 44 H 0.37 9.58 6.63 -40.82 -0.27 9.31 16 45 H 0.26 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -32.87 380.19 -8.99 -41.86 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -5.63 Total: 20.06 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.65 Total: -6.94 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.20 Total: -57.47 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.36 Total: -21.38 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.09 Total: 20.05 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.20 Total: -1.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.87 -8.99 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571442025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.785 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds