Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47110 * 2 1 4 4 C 1.50690 * 109.46978 * 239.99982 * 2 1 3 5 5 O 1.21298 * 120.00245 * 264.23877 * 4 2 1 6 6 N 1.34778 * 120.00136 * 84.24185 * 4 2 1 7 7 C 1.37101 * 119.99940 * 5.67739 * 6 4 2 8 8 H 1.08002 * 119.99506 * 234.93626 * 7 6 4 9 9 C 1.38949 * 120.00173 * 54.93213 * 7 6 4 10 10 N 1.31417 * 119.99844 * 14.31711 * 9 7 6 11 11 Si 1.86798 * 120.00065 * 194.31981 * 9 7 6 12 12 H 1.48495 * 109.47132 * 89.99888 * 11 9 7 13 13 H 1.48499 * 109.47005 * 210.00225 * 11 9 7 14 14 H 1.48501 * 109.47076 * 329.99721 * 11 9 7 15 15 C 1.46497 * 120.00142 * 185.67420 * 6 4 2 16 16 C 1.50696 * 109.47383 * 89.99996 * 15 6 4 17 17 C 1.35348 * 126.91329 * 264.68709 * 16 15 6 18 18 N 1.33775 * 106.49915 * 179.90343 * 17 16 15 19 19 N 1.28633 * 108.88181 * 0.36586 * 18 17 16 20 20 N 1.28719 * 110.18275 * 359.76886 * 19 18 17 21 21 H 0.96995 * 125.87372 * 180.02562 * 20 19 18 22 22 C 1.50707 * 109.46936 * 119.99811 * 2 1 3 23 23 C 1.33991 * 124.92282 * 239.99968 * 22 2 1 24 24 C 1.46781 * 106.18254 * 179.97438 * 23 22 2 25 25 C 1.39410 * 134.36919 * 180.02562 * 24 23 22 26 26 C 1.36737 * 119.71771 * 179.97438 * 25 24 23 27 27 C 1.38740 * 120.41506 * 359.97438 * 26 25 24 28 28 C 1.37847 * 120.68616 * 0.02812 * 27 26 25 29 29 C 1.38938 * 119.82122 * 359.97438 * 28 27 26 30 30 O 1.34453 * 124.92102 * 59.69972 * 22 2 1 31 31 H 1.09008 * 109.47331 * 184.46460 * 1 2 3 32 32 H 1.09004 * 109.47433 * 304.46098 * 1 2 3 33 33 H 1.08999 * 109.47254 * 64.45937 * 1 2 3 34 34 H 0.96998 * 119.99509 * 183.49145 * 10 9 7 35 35 H 1.09001 * 109.47452 * 210.00443 * 15 6 4 36 36 H 1.09005 * 109.47247 * 329.99835 * 15 6 4 37 37 H 1.08002 * 126.75134 * 0.03832 * 17 16 15 38 38 H 1.07997 * 126.90910 * 359.96108 * 23 22 2 39 39 H 1.08005 * 120.13879 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.78960 * 180.02562 * 26 25 24 41 41 H 1.07999 * 119.65538 * 180.02562 * 27 26 25 42 42 H 1.08001 * 120.08882 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3339 -1.8838 -1.1726 6 7 2.1465 -0.0419 -2.3951 7 6 1.9178 1.3094 -2.4352 8 1 1.1920 1.7139 -3.1251 9 6 2.6198 2.1582 -1.5883 10 7 3.6869 1.7219 -0.9574 11 14 2.0468 3.9196 -1.3464 12 1 1.0937 3.9784 -0.2093 13 1 3.2177 4.7856 -1.0562 14 1 1.3736 4.3952 -2.5817 15 6 2.5150 -0.7590 -3.6182 16 6 1.2680 -1.2455 -4.3104 17 6 0.7024 -2.4702 -4.2005 18 7 -0.3824 -2.4594 -4.9832 19 7 -0.4777 -1.3070 -5.5467 20 7 0.4917 -0.5477 -5.1715 21 1 0.6399 0.3675 -5.4566 22 6 2.0323 -0.7104 1.2306 23 6 2.8059 -0.1565 2.1740 24 6 3.0464 -1.2045 3.1732 25 6 3.7574 -1.2649 4.3708 26 6 3.7824 -2.4299 5.0862 27 6 3.1045 -3.5503 4.6278 28 6 2.3962 -3.5094 3.4460 29 6 2.3580 -2.3356 2.7036 30 8 1.7645 -1.9902 1.5437 31 1 -0.3634 -1.0246 0.0800 32 1 -0.3634 0.5815 0.8473 33 1 -0.3634 0.4431 -0.9272 34 1 4.1474 2.2982 -0.3276 35 1 3.0610 -0.0886 -4.2820 36 1 3.1454 -1.6112 -3.3639 37 1 1.0561 -3.2936 -3.5976 38 1 3.1779 0.8572 2.1950 39 1 4.2863 -0.3952 4.7319 40 1 4.3325 -2.4779 6.0143 41 1 3.1322 -4.4640 5.2030 42 1 1.8724 -4.3875 3.0980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575178509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = 95.010462 kcal Electronic energy + Delta-G solvation = -29667.777848 eV Core-core repulsion = 25616.871034 eV Total energy + Delta-G solvation = -4050.906814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.81805 -42.00130 -38.96393 -37.53358 -35.03448 -33.88184 -32.88536 -32.37381 -31.76348 -30.66647 -30.09276 -28.25473 -26.47970 -25.01746 -23.83516 -22.61231 -22.44646 -21.74319 -21.21269 -20.67050 -19.47592 -17.95512 -17.32049 -16.95042 -16.10452 -16.00841 -15.62871 -15.42768 -15.22585 -14.90190 -14.43386 -14.16292 -13.84470 -13.81901 -13.48252 -13.38282 -12.90971 -12.73559 -12.52501 -12.14210 -11.98441 -11.83273 -11.74303 -11.48604 -11.44235 -11.40474 -11.15859 -11.00041 -10.77829 -10.62256 -10.51962 -10.43548 -10.14324 -9.73810 -9.16706 -8.94248 -8.46211 -8.28875 -7.72892 -7.66301 -6.70779 -4.62136 1.23076 1.65517 1.97881 2.82567 2.91285 2.96850 3.02941 3.03572 3.18709 3.21506 3.76305 3.88080 3.99449 4.51293 4.59897 4.83648 4.99674 5.02027 5.11034 5.33698 5.44267 5.52502 5.54317 5.58543 5.63095 5.78329 5.81146 5.85992 6.09507 6.12325 6.16999 6.23891 6.26418 6.42600 6.50204 6.52556 6.54885 6.61679 6.64667 6.74349 6.89186 7.01813 7.08458 7.26221 7.58188 7.72527 8.28078 8.59249 8.85625 9.20729 9.65867 10.31940 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.004272 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.679936 B = 6552.508295 C = 8393.777206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.032 4.032 3 H 0.148 0.852 4 C 0.534 3.466 5 O -0.581 6.581 6 N -0.452 5.452 7 C -0.353 4.353 8 H 0.079 0.921 9 C 0.051 3.949 10 N -0.848 5.848 11 Si 0.905 3.095 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.178 3.822 16 C 0.001 3.999 17 C -0.044 4.044 18 N -0.276 5.276 19 N -0.100 5.100 20 N -0.384 5.384 21 H 0.446 0.554 22 C 0.093 3.907 23 C -0.220 4.220 24 C -0.122 4.122 25 C -0.077 4.077 26 C -0.144 4.144 27 C -0.108 4.108 28 C -0.105 4.105 29 C 0.049 3.951 30 O -0.173 6.173 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.276 0.724 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.187 0.813 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -0.737 5.611 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 H 0.165 0.835 4 C 0.323 3.677 5 O -0.463 6.463 6 N -0.174 5.174 7 C -0.481 4.481 8 H 0.097 0.903 9 C -0.157 4.157 10 N -0.481 5.481 11 Si 0.730 3.270 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.190 1.190 15 C 0.052 3.948 16 C -0.135 4.135 17 C -0.202 4.202 18 N -0.143 5.143 19 N -0.081 5.081 20 N -0.105 5.105 21 H 0.291 0.709 22 C 0.044 3.956 23 C -0.239 4.239 24 C -0.123 4.123 25 C -0.095 4.095 26 C -0.162 4.162 27 C -0.126 4.126 28 C -0.124 4.124 29 C 0.000 4.000 30 O -0.073 6.073 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.204 0.796 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.375 -1.687 4.716 5.194 hybrid contribution 1.145 1.890 0.729 2.327 sum -0.230 0.203 5.445 5.453 Atomic orbital electron populations 1.21647 0.92815 1.02075 1.02757 1.20275 0.96647 1.01557 0.86807 0.83513 1.19942 0.77700 0.85473 0.84552 1.90578 1.53048 1.17087 1.85616 1.43122 1.62872 1.07057 1.04306 1.19177 1.21984 0.80561 1.26358 0.90289 1.25642 0.93253 0.99662 0.97148 1.70014 1.14309 1.38572 1.25256 0.86262 0.78852 0.82182 0.79706 1.19442 1.20412 1.18968 1.19868 0.88659 0.98434 0.87870 1.23186 0.99824 0.93237 0.97232 1.23418 0.94978 0.98477 1.03294 1.74998 1.17742 1.12071 1.09504 1.78140 1.10048 0.98283 1.21601 1.45048 1.18502 1.15445 1.31494 0.70904 1.22163 0.96596 0.80799 0.96026 1.22105 1.05953 1.00410 0.95392 1.20004 1.01313 0.94066 0.96954 1.20231 0.98078 0.98222 0.92965 1.20649 1.01842 0.93154 1.00578 1.20782 0.97777 0.98696 0.95378 1.19901 1.02782 0.94891 0.94781 1.19708 0.97237 0.95979 0.87040 1.84074 1.60933 1.28150 1.34127 0.92606 0.92330 0.90742 0.91319 0.89765 0.88554 0.79572 0.82859 0.86000 0.85954 0.85378 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.16 37.16 0.34 -2.16 16 2 C -0.03 -0.68 2.20 -92.92 -0.20 -0.88 16 3 H 0.15 3.18 4.24 -51.93 -0.22 2.96 16 4 C 0.53 12.34 6.09 -10.99 -0.07 12.27 16 5 O -0.58 -14.70 15.32 -7.60 -0.12 -14.82 16 6 N -0.45 -9.69 2.39 -116.10 -0.28 -9.96 16 7 C -0.35 -7.46 8.57 -14.93 -0.13 -7.59 16 8 H 0.08 1.60 7.87 -52.49 -0.41 1.18 16 9 C 0.05 1.09 3.32 -17.47 -0.06 1.04 16 10 N -0.85 -19.53 11.84 55.50 0.66 -18.87 16 11 Si 0.91 16.73 29.58 -169.99 -5.03 11.70 16 12 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 13 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 14 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 15 C 0.18 3.30 5.99 -5.20 -0.03 3.27 16 16 C 0.00 0.01 6.89 -82.09 -0.57 -0.55 16 17 C -0.04 -0.81 11.99 -17.74 -0.21 -1.02 16 18 N -0.28 -5.28 12.41 30.24 0.38 -4.91 16 19 N -0.10 -1.80 13.38 60.35 0.81 -0.99 16 20 N -0.38 -6.07 6.98 33.54 0.23 -5.84 16 21 H 0.45 5.62 8.96 -190.40 -1.71 3.91 16 22 C 0.09 1.96 5.38 -35.80 -0.19 1.77 16 23 C -0.22 -4.30 10.97 -37.62 -0.41 -4.71 16 24 C -0.12 -2.24 6.40 -105.16 -0.67 -2.91 16 25 C -0.08 -1.14 10.05 -39.69 -0.40 -1.54 16 26 C -0.14 -1.84 9.98 -39.94 -0.40 -2.24 16 27 C -0.11 -1.38 10.01 -39.54 -0.40 -1.78 16 28 C -0.11 -1.62 10.07 -39.47 -0.40 -2.01 16 29 C 0.05 0.92 7.42 -38.47 -0.29 0.64 16 30 O -0.17 -3.72 9.95 -9.22 -0.09 -3.81 16 31 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.36 8.00 -51.93 -0.42 0.94 16 34 H 0.28 6.06 8.31 -40.82 -0.34 5.72 16 35 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 36 H 0.10 1.86 7.35 -51.93 -0.38 1.48 16 37 H 0.19 3.24 8.06 -52.49 -0.42 2.82 16 38 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 39 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -28.73 365.04 -8.09 -36.82 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.07 Total: 13.59 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -4.08 Total: -8.41 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.80 Total: -40.57 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.21 Total: -18.63 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.73 -8.09 -36.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575178509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.831 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds