Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47110 * 2 1 4 4 C 1.50690 * 109.46978 * 239.99982 * 2 1 3 5 5 O 1.21298 * 120.00245 * 264.23877 * 4 2 1 6 6 N 1.34778 * 120.00136 * 84.24185 * 4 2 1 7 7 C 1.37101 * 119.99940 * 5.67739 * 6 4 2 8 8 H 1.08002 * 119.99506 * 234.93626 * 7 6 4 9 9 C 1.38949 * 120.00173 * 54.93213 * 7 6 4 10 10 N 1.31417 * 119.99844 * 14.31711 * 9 7 6 11 11 Si 1.86798 * 120.00065 * 194.31981 * 9 7 6 12 12 H 1.48495 * 109.47132 * 89.99888 * 11 9 7 13 13 H 1.48499 * 109.47005 * 210.00225 * 11 9 7 14 14 H 1.48501 * 109.47076 * 329.99721 * 11 9 7 15 15 C 1.46497 * 120.00142 * 185.67420 * 6 4 2 16 16 C 1.50696 * 109.47383 * 89.99996 * 15 6 4 17 17 C 1.35348 * 126.91329 * 264.68709 * 16 15 6 18 18 N 1.33775 * 106.49915 * 179.90343 * 17 16 15 19 19 N 1.28633 * 108.88181 * 0.36586 * 18 17 16 20 20 N 1.28719 * 110.18275 * 359.76886 * 19 18 17 21 21 H 0.96995 * 125.87372 * 180.02562 * 20 19 18 22 22 C 1.50707 * 109.46936 * 119.99811 * 2 1 3 23 23 C 1.33991 * 124.92282 * 239.99968 * 22 2 1 24 24 C 1.46781 * 106.18254 * 179.97438 * 23 22 2 25 25 C 1.39410 * 134.36919 * 180.02562 * 24 23 22 26 26 C 1.36737 * 119.71771 * 179.97438 * 25 24 23 27 27 C 1.38740 * 120.41506 * 359.97438 * 26 25 24 28 28 C 1.37847 * 120.68616 * 0.02812 * 27 26 25 29 29 C 1.38938 * 119.82122 * 359.97438 * 28 27 26 30 30 O 1.34453 * 124.92102 * 59.69972 * 22 2 1 31 31 H 1.09008 * 109.47331 * 184.46460 * 1 2 3 32 32 H 1.09004 * 109.47433 * 304.46098 * 1 2 3 33 33 H 1.08999 * 109.47254 * 64.45937 * 1 2 3 34 34 H 0.96998 * 119.99509 * 183.49145 * 10 9 7 35 35 H 1.09001 * 109.47452 * 210.00443 * 15 6 4 36 36 H 1.09005 * 109.47247 * 329.99835 * 15 6 4 37 37 H 1.08002 * 126.75134 * 0.03832 * 17 16 15 38 38 H 1.07997 * 126.90910 * 359.96108 * 23 22 2 39 39 H 1.08005 * 120.13879 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.78960 * 180.02562 * 26 25 24 41 41 H 1.07999 * 119.65538 * 180.02562 * 27 26 25 42 42 H 1.08001 * 120.08882 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3339 -1.8838 -1.1726 6 7 2.1465 -0.0419 -2.3951 7 6 1.9178 1.3094 -2.4352 8 1 1.1920 1.7139 -3.1251 9 6 2.6198 2.1582 -1.5883 10 7 3.6869 1.7219 -0.9574 11 14 2.0468 3.9196 -1.3464 12 1 1.0937 3.9784 -0.2093 13 1 3.2177 4.7856 -1.0562 14 1 1.3736 4.3952 -2.5817 15 6 2.5150 -0.7590 -3.6182 16 6 1.2680 -1.2455 -4.3104 17 6 0.7024 -2.4702 -4.2005 18 7 -0.3824 -2.4594 -4.9832 19 7 -0.4777 -1.3070 -5.5467 20 7 0.4917 -0.5477 -5.1715 21 1 0.6399 0.3675 -5.4566 22 6 2.0323 -0.7104 1.2306 23 6 2.8059 -0.1565 2.1740 24 6 3.0464 -1.2045 3.1732 25 6 3.7574 -1.2649 4.3708 26 6 3.7824 -2.4299 5.0862 27 6 3.1045 -3.5503 4.6278 28 6 2.3962 -3.5094 3.4460 29 6 2.3580 -2.3356 2.7036 30 8 1.7645 -1.9902 1.5437 31 1 -0.3634 -1.0246 0.0800 32 1 -0.3634 0.5815 0.8473 33 1 -0.3634 0.4431 -0.9272 34 1 4.1474 2.2982 -0.3276 35 1 3.0610 -0.0886 -4.2820 36 1 3.1454 -1.6112 -3.3639 37 1 1.0561 -3.2936 -3.5976 38 1 3.1779 0.8572 2.1950 39 1 4.2863 -0.3952 4.7319 40 1 4.3325 -2.4779 6.0143 41 1 3.1322 -4.4640 5.2030 42 1 1.8724 -4.3875 3.0980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575178509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = 79.602567 kcal Electronic energy + Delta-G solvation = -29668.445984 eV Core-core repulsion = 25616.871034 eV Total energy + Delta-G solvation = -4051.574951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.25417 -43.38829 -40.63538 -38.73602 -36.75082 -35.43445 -34.33896 -33.89481 -33.16805 -32.20266 -31.27781 -29.57674 -28.02848 -26.68017 -25.28139 -24.00286 -23.78145 -23.11497 -22.57672 -22.12150 -21.07041 -19.43489 -18.84941 -18.25289 -17.68645 -17.34225 -17.14150 -16.88594 -16.73581 -16.34978 -15.87079 -15.68887 -15.27102 -15.12722 -14.94672 -14.76465 -14.39472 -14.15582 -13.94567 -13.66940 -13.37265 -13.15341 -13.09124 -13.01875 -12.99435 -12.83343 -12.65219 -12.42656 -12.28333 -12.06673 -11.92139 -11.78512 -11.56312 -11.09713 -10.81563 -10.49518 -10.07195 -9.52055 -9.40738 -9.02863 -8.36062 -6.32413 0.00759 0.46008 0.54609 1.38318 1.44890 1.49106 1.53288 1.59088 1.81038 1.87658 2.13211 2.30606 2.81855 2.93729 2.98247 3.47060 3.59214 3.78154 3.86049 4.07790 4.12020 4.16829 4.21844 4.24119 4.28859 4.39095 4.43408 4.55459 4.65068 4.73698 4.76476 4.80242 4.89149 4.96391 5.01363 5.14328 5.15581 5.35236 5.39448 5.42768 5.52830 5.54310 5.86912 5.92310 6.00436 6.33460 6.59402 6.93562 7.40965 7.49353 7.96611 8.67640 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.004272 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.679936 B = 6552.508295 C = 8393.777206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.030 4.030 3 H 0.141 0.859 4 C 0.520 3.480 5 O -0.615 6.615 6 N -0.455 5.455 7 C -0.359 4.359 8 H 0.092 0.908 9 C 0.023 3.977 10 N -0.879 5.879 11 Si 0.960 3.040 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.255 1.255 15 C 0.179 3.821 16 C 0.004 3.996 17 C -0.051 4.051 18 N -0.295 5.295 19 N -0.100 5.100 20 N -0.364 5.364 21 H 0.461 0.539 22 C 0.061 3.939 23 C -0.222 4.222 24 C -0.148 4.148 25 C -0.085 4.085 26 C -0.132 4.132 27 C -0.090 4.090 28 C -0.123 4.123 29 C 0.013 3.987 30 O -0.200 6.200 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.276 0.724 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.189 0.811 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -0.269 7.215 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.051 4.051 3 H 0.158 0.842 4 C 0.311 3.689 5 O -0.500 6.500 6 N -0.175 5.175 7 C -0.487 4.487 8 H 0.110 0.890 9 C -0.182 4.182 10 N -0.514 5.514 11 Si 0.783 3.217 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.179 1.179 15 C 0.054 3.946 16 C -0.132 4.132 17 C -0.209 4.209 18 N -0.163 5.163 19 N -0.081 5.081 20 N -0.087 5.087 21 H 0.309 0.691 22 C 0.013 3.987 23 C -0.241 4.241 24 C -0.149 4.149 25 C -0.103 4.103 26 C -0.150 4.150 27 C -0.107 4.107 28 C -0.142 4.142 29 C -0.034 4.034 30 O -0.101 6.101 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.206 0.794 38 H 0.176 0.824 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.190 0.810 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.188 -1.190 6.285 6.506 hybrid contribution 1.167 1.666 0.328 2.060 sum -0.021 0.476 6.613 6.630 Atomic orbital electron populations 1.21606 0.91425 1.01857 1.03644 1.20201 0.97821 1.00807 0.86287 0.84228 1.20415 0.77613 0.85294 0.85626 1.90537 1.54710 1.18497 1.86263 1.43288 1.62080 1.07419 1.04679 1.19480 1.22249 0.80348 1.26595 0.89005 1.26232 0.92945 1.02542 0.96512 1.70104 1.15529 1.39832 1.25972 0.85416 0.78111 0.78210 0.79944 1.19165 1.21196 1.17861 1.19879 0.89174 0.98236 0.87324 1.22876 0.99615 0.93134 0.97561 1.23548 0.94996 0.99074 1.03303 1.74995 1.18270 1.12756 1.10232 1.78084 1.10307 0.98228 1.21475 1.44994 1.17424 1.15902 1.30410 0.69054 1.22205 0.98433 0.81296 0.96750 1.22315 1.05168 1.00946 0.95719 1.20244 1.02940 0.93405 0.98350 1.20629 0.97618 1.00188 0.91882 1.21202 1.00607 0.91880 1.01325 1.21371 0.95087 1.00351 0.93919 1.20345 1.03866 0.94285 0.95658 1.20366 0.98333 0.97750 0.86976 1.83992 1.62047 1.28409 1.35681 0.93564 0.90208 0.90682 0.91419 0.87902 0.89735 0.79443 0.82383 0.83892 0.81648 0.81013 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.16 71.98 0.66 -4.18 16 2 C -0.03 -1.32 2.20 -12.29 -0.03 -1.35 16 3 H 0.14 6.22 4.24 -2.39 -0.01 6.21 16 4 C 0.52 24.88 6.09 87.65 0.53 25.41 16 5 O -0.62 -32.67 15.32 9.48 0.15 -32.52 16 6 N -0.45 -19.71 2.39 -639.60 -1.53 -21.24 16 7 C -0.36 -15.03 8.57 84.04 0.72 -14.31 16 8 H 0.09 3.56 7.87 -2.91 -0.02 3.54 16 9 C 0.02 0.98 3.32 84.93 0.28 1.27 16 10 N -0.88 -41.10 11.84 21.66 0.26 -40.85 16 11 Si 0.96 33.60 29.58 68.60 2.03 35.63 16 12 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 13 H -0.29 -10.31 7.11 99.48 0.71 -9.61 16 14 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 15 C 0.18 6.72 5.99 85.63 0.51 7.23 16 16 C 0.00 0.15 6.89 41.35 0.28 0.43 16 17 C -0.05 -1.90 11.99 83.73 1.00 -0.90 16 18 N -0.30 -11.26 12.41 -58.25 -0.72 -11.99 16 19 N -0.10 -3.50 13.38 37.02 0.50 -3.01 16 20 N -0.36 -11.08 6.98 -47.79 -0.33 -11.42 16 21 H 0.46 10.78 8.96 -219.96 -1.97 8.81 16 22 C 0.06 2.72 5.38 24.72 0.13 2.85 16 23 C -0.22 -9.04 10.97 23.54 0.26 -8.78 16 24 C -0.15 -5.48 6.40 -20.21 -0.13 -5.61 16 25 C -0.09 -2.37 10.05 22.20 0.22 -2.15 16 26 C -0.13 -2.85 9.98 22.04 0.22 -2.63 16 27 C -0.09 -1.96 10.01 22.30 0.22 -1.74 16 28 C -0.12 -3.67 10.07 22.34 0.23 -3.44 16 29 C 0.01 0.50 7.42 22.99 0.17 0.67 16 30 O -0.20 -9.08 9.95 3.68 0.04 -9.04 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.07 2.76 8.00 -2.39 -0.02 2.74 16 34 H 0.28 12.32 8.31 -92.71 -0.77 11.55 16 35 H 0.10 3.41 8.04 -2.39 -0.02 3.40 16 36 H 0.08 3.38 7.35 -2.38 -0.02 3.36 16 37 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 38 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 39 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 41 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -64.34 365.04 4.78 -59.56 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.89 Total: 42.09 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.29 Total: -7.22 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -1.83 Total: -88.49 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: 0.18 Total: -41.56 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.63 kcal Total: -64.34 4.78 -59.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575178509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.161 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds