Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 119.99824 * 2 1 4 4 O 1.42901 * 109.46875 * 134.99959 * 3 2 1 5 5 C 1.42899 * 113.99607 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46876 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.48144 * 127.84017 * 359.96351 * 8 6 5 10 10 C 1.54787 * 104.42259 * 140.36092 * 9 8 6 11 11 H 1.08998 * 118.34074 * 244.38637 * 10 9 8 12 12 C 1.54288 * 104.91816 * 24.16831 * 10 9 8 13 13 H 1.08997 * 121.81567 * 222.88310 * 12 10 9 14 14 C 1.48145 * 127.83833 * 180.27304 * 8 6 5 15 15 C 1.52999 * 59.72199 * 113.94665 * 12 10 9 16 16 H 1.09001 * 117.43840 * 252.34936 * 15 12 10 17 17 N 1.46493 * 117.44213 * 107.65274 * 15 12 10 18 18 C 1.34784 * 119.99924 * 154.99807 * 17 15 12 19 19 O 1.21283 * 119.99794 * 359.97438 * 18 17 15 20 20 C 1.50701 * 120.00067 * 179.97438 * 18 17 15 21 21 S 1.81000 * 109.47191 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99723 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00244 * 359.97438 * 22 21 20 24 24 C 1.38801 * 119.99763 * 180.02562 * 22 21 20 25 25 N 1.31634 * 120.00042 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00143 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46783 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47017 * 119.99359 * 26 24 22 29 29 H 1.48491 * 109.46752 * 239.99576 * 26 24 22 30 30 H 1.07994 * 119.99578 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99754 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.00408 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47255 * 15.00087 * 3 2 1 34 34 H 1.09001 * 109.46743 * 254.99731 * 3 2 1 35 35 H 1.09004 * 109.47206 * 60.00168 * 5 4 3 36 36 H 1.08994 * 109.47548 * 299.99825 * 5 4 3 37 37 H 1.09005 * 110.40649 * 259.20040 * 9 8 6 38 38 H 1.08999 * 110.40810 * 21.62203 * 9 8 6 39 39 H 1.09001 * 110.41244 * 338.38003 * 14 8 6 40 40 H 1.09006 * 110.40515 * 100.68974 * 14 8 6 41 41 H 0.97001 * 120.00527 * 334.99892 * 17 15 12 42 42 H 1.09003 * 109.46883 * 300.00467 * 20 18 17 43 43 H 1.09007 * 109.47023 * 59.99672 * 20 18 17 44 44 H 0.96995 * 120.00179 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4350 1.0320 6 6 4.9939 2.2570 2.0621 7 8 5.0891 1.2108 2.6683 8 7 5.8627 3.2582 2.3055 9 6 5.9113 4.5944 1.6676 10 6 6.2523 5.5625 2.8262 11 1 5.5133 6.3123 3.1084 12 6 6.9660 4.6877 3.8778 13 1 6.7480 4.7758 4.9421 14 6 6.9896 3.2699 3.2671 15 6 7.7284 5.7982 3.1524 16 1 8.4624 5.4979 2.4046 17 7 8.0666 6.9984 3.9214 18 6 9.1172 7.7594 3.5554 19 8 9.7827 7.4503 2.5898 20 6 9.4648 8.9944 4.3461 21 16 10.9129 9.7936 3.6112 22 6 11.0918 11.1656 4.7022 23 1 10.4032 11.2953 5.5241 24 6 12.1170 12.0802 4.5048 25 7 12.9559 11.9224 3.5028 26 14 12.3062 13.5351 5.6610 27 1 11.2438 13.4853 6.6973 28 1 13.6387 13.4782 6.3143 29 1 12.1864 14.7986 4.8902 30 1 -0.5399 -0.9353 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8501 -0.9352 0.0004 33 1 1.3855 2.1162 0.2660 34 1 2.4755 1.4868 -0.9927 35 1 3.2689 3.2697 1.3192 36 1 4.3587 2.6397 0.0608 37 1 6.6886 4.6229 0.9039 38 1 4.9427 4.8444 1.2347 39 1 6.8356 2.5194 4.0424 40 1 7.9325 3.0927 2.7497 41 1 7.5346 7.2454 4.6940 42 1 8.6214 9.6848 4.3310 43 1 9.6876 8.7156 5.3761 44 1 13.6726 12.5613 3.3650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579087772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -74.650649 kcal Electronic energy + Delta-G solvation = -25267.910248 eV Core-core repulsion = 21312.797576 eV Total energy + Delta-G solvation = -3955.112672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71153 -40.57911 -39.58840 -38.54461 -35.86346 -34.77997 -34.57116 -33.60830 -30.83761 -30.12927 -29.01150 -27.67215 -26.90257 -25.77893 -22.67658 -21.86154 -21.32756 -21.11323 -20.40493 -19.80759 -18.57952 -17.92652 -17.89133 -17.45117 -17.33135 -16.86748 -16.81188 -16.37657 -16.15168 -16.00453 -15.57614 -14.95909 -14.84912 -14.56888 -14.47473 -14.14120 -13.93809 -13.79003 -13.63407 -13.40442 -13.14563 -13.13513 -13.09772 -12.91051 -12.65710 -12.58915 -11.97417 -11.90259 -11.71482 -11.30528 -11.14650 -11.08784 -11.00037 -10.79210 -10.27326 -10.25566 -9.91656 -9.83999 -8.64638 -8.33802 -6.11184 1.15310 1.25558 1.41957 1.42370 1.48080 1.50642 1.57202 1.64531 2.14309 2.28408 2.53697 2.91890 3.00963 3.30508 3.43808 3.54627 3.63159 3.75115 3.91637 3.98909 4.04157 4.13716 4.14560 4.20645 4.24962 4.32567 4.39638 4.44800 4.53302 4.59983 4.63556 4.73402 4.73485 4.94974 4.97836 4.99856 5.08969 5.43894 5.45382 5.65453 5.69199 6.06486 6.21357 6.38991 6.45024 7.00306 7.08310 7.20397 8.75561 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040040 B = 0.001446 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.124310 B =19362.856475 C =19525.978592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.051 3.949 6 C 0.531 3.469 7 O -0.576 6.576 8 N -0.620 5.620 9 C 0.125 3.875 10 C -0.168 4.168 11 H 0.146 0.854 12 C -0.171 4.171 13 H 0.139 0.861 14 C 0.130 3.870 15 C 0.111 3.889 16 H 0.120 0.880 17 N -0.684 5.684 18 C 0.542 3.458 19 O -0.559 6.559 20 C -0.130 4.130 21 S -0.149 6.149 22 C -0.546 4.546 23 H 0.083 0.917 24 C 0.015 3.985 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.256 1.256 28 H -0.276 1.276 29 H -0.275 1.275 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.420 0.580 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.945 -16.936 -4.145 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.318 6.318 5 C -0.028 4.028 6 C 0.321 3.679 7 O -0.455 6.455 8 N -0.355 5.355 9 C 0.003 3.997 10 C -0.189 4.189 11 H 0.164 0.836 12 C -0.191 4.191 13 H 0.157 0.843 14 C 0.008 3.992 15 C 0.004 3.996 16 H 0.138 0.862 17 N -0.335 5.335 18 C 0.328 3.672 19 O -0.436 6.436 20 C -0.281 4.281 21 S 0.078 5.922 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.190 4.190 25 N -0.548 5.548 26 Si 0.819 3.181 27 H -0.180 1.180 28 H -0.201 1.201 29 H -0.200 1.200 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.257 0.743 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.715 -18.206 -5.431 31.174 hybrid contribution -0.305 1.333 1.888 2.331 sum -25.020 -16.874 -3.543 30.385 Atomic orbital electron populations 1.24065 0.95045 1.03517 0.97745 1.22793 0.96320 0.98126 1.02400 1.21804 0.88226 0.96636 0.92428 1.87993 1.45554 1.36388 1.61846 1.22309 0.92431 0.89459 0.98604 1.20523 0.81895 0.81930 0.83566 1.90727 1.73772 1.28576 1.52419 1.49233 1.30228 1.15225 1.40837 1.22193 1.04936 0.78728 0.93841 1.24403 0.95751 1.01227 0.97510 0.83606 1.24063 1.05441 0.90186 0.99423 0.84329 1.21738 0.89356 0.95564 0.92547 1.21565 0.94545 0.86072 0.97409 0.86234 1.45000 1.30901 1.25018 1.32613 1.20030 0.79629 0.83712 0.83785 1.90702 1.51794 1.71978 1.29172 1.23373 1.03542 0.97773 1.03452 1.85585 1.34515 1.29807 1.42312 1.23246 1.18402 1.11461 1.16229 0.89841 1.26087 0.94227 1.01170 0.97505 1.70181 1.16608 1.37463 1.30541 0.84935 0.78546 0.76798 0.77859 1.17984 1.20102 1.19996 0.86879 0.86906 0.87703 0.90634 0.90468 0.87020 0.87253 0.89272 0.86132 0.90173 0.90194 0.74277 0.86818 0.87088 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 14.31 67.78 0.97 -0.47 16 2 C -0.18 -2.21 9.89 25.65 0.25 -1.95 16 3 C 0.08 0.93 6.35 71.24 0.45 1.38 16 4 O -0.40 -7.40 9.86 -129.94 -1.28 -8.68 16 5 C 0.05 0.62 5.39 71.24 0.38 1.01 16 6 C 0.53 10.72 7.99 87.66 0.70 11.42 16 7 O -0.58 -17.90 16.77 16.00 0.27 -17.64 16 8 N -0.62 -9.60 3.31 -807.15 -2.67 -12.27 16 9 C 0.12 1.17 6.74 86.67 0.58 1.76 16 10 C -0.17 -1.91 7.08 -9.75 -0.07 -1.98 16 11 H 0.15 1.18 8.14 -2.39 -0.02 1.17 16 12 C -0.17 -2.33 7.06 -9.89 -0.07 -2.40 16 13 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.13 2.15 6.85 86.53 0.59 2.74 16 15 C 0.11 2.02 5.97 44.99 0.27 2.29 16 16 H 0.12 2.75 7.40 -2.39 -0.02 2.73 16 17 N -0.68 -14.40 5.56 -442.53 -2.46 -16.86 16 18 C 0.54 17.99 7.85 87.66 0.69 18.67 16 19 O -0.56 -23.90 15.43 -3.04 -0.05 -23.95 16 20 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 21 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 22 C -0.55 -30.21 9.50 67.95 0.65 -29.57 16 23 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 24 C 0.01 0.83 5.49 84.86 0.47 1.30 16 25 N -0.91 -54.92 13.22 21.65 0.29 -54.63 16 26 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 28 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 30 H 0.11 0.76 8.06 -2.91 -0.02 0.73 16 31 H 0.11 0.63 7.90 -2.91 -0.02 0.60 16 32 H 0.10 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.08 0.52 7.86 -2.39 -0.02 0.50 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.11 0.65 7.96 -2.38 -0.02 0.63 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 38 H 0.12 0.38 7.31 -2.39 -0.02 0.36 16 39 H 0.08 1.53 7.88 -2.39 -0.02 1.51 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.42 5.91 8.83 -92.71 -0.82 5.09 16 42 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -85.50 394.73 1.45 -84.05 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.19 Total: 14.62 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.31 Total: -0.12 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -4.85 Total: -83.76 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -1.06 Total: -50.27 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -85.50 1.45 -84.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579087772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.398 kcal (2) G-P(sol) polarization free energy of solvation -85.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds