Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 C 1.38258 * 119.99389 * 90.00076 * 5 4 2 7 7 C 1.38220 * 120.02596 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.01533 * 0.02562 * 7 6 5 9 9 C 1.38336 * 119.98784 * 359.97438 * 8 7 6 10 10 Cl 1.73591 * 120.01594 * 179.97438 * 9 8 7 11 11 C 1.38195 * 119.99049 * 269.72980 * 5 4 2 12 12 C 1.50703 * 109.46941 * 120.00069 * 2 1 3 13 13 O 1.21280 * 120.00262 * 120.00065 * 12 2 1 14 14 N 1.34776 * 119.99815 * 299.99690 * 12 2 1 15 15 C 1.46497 * 119.99939 * 180.02562 * 14 12 2 16 16 C 1.53005 * 109.47343 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.46539 * 64.99800 * 16 15 14 18 18 C 1.52999 * 109.47336 * 184.99676 * 16 15 14 19 19 O 1.42898 * 109.46871 * 55.00192 * 18 16 15 20 20 N 1.46495 * 109.46977 * 304.99888 * 16 15 14 21 21 C 1.36941 * 119.99840 * 154.99420 * 20 16 15 22 22 H 1.08000 * 120.00090 * 0.02562 * 21 20 16 23 23 C 1.38812 * 119.99581 * 179.97438 * 21 20 16 24 24 N 1.31613 * 120.00659 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99651 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47007 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47280 * 120.00322 * 25 23 21 28 28 H 1.48498 * 109.47115 * 240.00374 * 25 23 21 29 29 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 31 31 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 32 32 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 33 33 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 34 34 H 1.07998 * 119.98745 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.99349 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.00863 * 179.97438 * 8 7 6 37 37 H 1.07998 * 120.00737 * 0.02562 * 11 5 4 38 38 H 0.96998 * 120.00301 * 0.02562 * 14 12 2 39 39 H 1.09003 * 109.47209 * 299.99513 * 15 14 12 40 40 H 1.09000 * 109.47689 * 59.99911 * 15 14 12 41 41 H 1.08998 * 109.47076 * 174.99981 * 18 16 15 42 42 H 1.09002 * 109.47098 * 295.00521 * 18 16 15 43 43 H 0.96703 * 113.99883 * 180.02562 * 19 18 16 44 44 H 0.97000 * 120.00276 * 334.99722 * 20 16 15 45 45 H 0.97001 * 120.00487 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4817 1.0331 -2.9792 7 6 2.1170 1.7469 -4.1052 8 6 0.9115 1.4857 -4.7291 9 6 0.0702 0.5093 -4.2267 10 17 -1.4442 0.1811 -5.0093 11 6 0.4384 -0.2089 -3.1027 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9402 3.6507 16 6 1.6858 -0.2186 4.9000 17 1 0.5995 -0.2955 4.9463 18 6 2.2962 -0.8633 6.1461 19 8 3.7206 -0.8669 6.0313 20 7 2.0734 1.1929 4.8408 21 6 1.3460 2.1318 5.5224 22 1 0.4867 1.8317 6.1038 23 6 1.7136 3.4692 5.4667 24 7 2.7609 3.8350 4.7585 25 14 0.7217 4.7500 6.3969 26 1 -0.3981 4.0858 7.1113 27 1 1.5977 5.4363 7.3802 28 1 0.1772 5.7458 5.4393 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.1263 -0.7996 -1.2055 33 1 1.6053 -1.7198 -1.2951 34 1 3.4239 1.2372 -2.4923 35 1 2.7741 2.5090 -4.4976 36 1 0.6264 2.0439 -5.6087 37 1 -0.2161 -0.9741 -2.7123 38 1 1.1487 0.5385 2.5436 39 1 1.8323 -1.9680 3.6510 40 1 3.2854 -0.9399 3.6507 41 1 2.0043 -0.2951 7.0292 42 1 1.9366 -1.8882 6.2381 43 1 4.1752 -1.2623 6.7877 44 1 2.8453 1.4625 4.3189 45 1 3.0180 4.7695 4.7199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676614270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -74.027036 kcal Electronic energy + Delta-G solvation = -26830.757613 eV Core-core repulsion = 22873.628277 eV Total energy + Delta-G solvation = -3957.129336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09311 -39.21102 -37.19446 -36.73897 -35.03909 -34.76037 -33.49097 -31.58982 -30.97886 -30.80168 -28.31548 -26.89955 -25.52034 -23.78205 -23.22152 -22.82974 -21.22930 -20.10691 -19.39504 -17.61824 -17.28852 -16.69818 -16.57994 -15.91288 -15.85168 -15.53780 -15.07053 -14.83222 -14.18414 -14.15227 -13.89717 -13.67426 -13.54447 -13.38673 -13.09832 -12.93407 -12.79646 -12.67887 -12.14965 -11.96801 -11.82386 -11.63360 -11.59964 -11.40598 -11.13985 -10.99552 -10.98569 -10.90722 -10.87367 -10.56463 -10.09679 -9.81974 -9.48440 -9.35218 -9.09913 -9.01038 -8.85251 -8.55540 -7.06276 -5.84302 -3.14608 0.93300 1.02808 1.89353 2.99147 3.34383 3.36857 3.42651 3.45156 3.64317 4.49037 4.51182 4.58226 4.79338 4.86892 4.91196 4.93341 5.02182 5.13759 5.16920 5.35146 5.39247 5.48391 5.51494 5.56790 5.62121 5.69234 5.76189 5.85366 5.89936 5.97446 6.01299 6.04085 6.09923 6.11905 6.15537 6.36882 6.37590 6.49663 6.58034 6.73667 6.93819 7.60375 7.97811 8.19005 8.32650 8.61598 9.45142 10.00368 10.36938 11.37257 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002526 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.382372 B =11082.437747 C =12362.152200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.062 4.062 5 C -0.062 4.062 6 C -0.110 4.110 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.034 4.034 10 Cl -0.076 7.076 11 C -0.106 4.106 12 C 0.515 3.485 13 O -0.556 6.556 14 N -0.711 5.711 15 C 0.118 3.882 16 C 0.165 3.835 17 H 0.065 0.935 18 C 0.059 3.941 19 O -0.560 6.560 20 N -0.713 5.713 21 C -0.247 4.247 22 H 0.070 0.930 23 C -0.008 4.008 24 N -0.925 5.925 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.409 0.591 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.364 0.636 44 H 0.389 0.611 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -8.342 -15.612 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 H 0.119 0.881 4 C -0.099 4.099 5 C -0.062 4.062 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.137 4.137 9 C -0.060 4.060 10 Cl -0.047 7.047 11 C -0.125 4.125 12 C 0.301 3.699 13 O -0.435 6.435 14 N -0.362 5.362 15 C -0.006 4.006 16 C 0.054 3.946 17 H 0.083 0.917 18 C -0.022 4.022 19 O -0.363 6.363 20 N -0.355 5.355 21 C -0.378 4.378 22 H 0.088 0.912 23 C -0.205 4.205 24 N -0.572 5.572 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.246 0.754 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.208 0.792 44 H 0.223 0.777 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.474 -8.662 -16.219 18.923 hybrid contribution -0.543 1.067 1.074 1.608 sum -5.016 -7.596 -15.145 17.670 Atomic orbital electron populations 1.21863 0.92945 1.02531 1.03135 1.21249 0.97733 1.01205 0.92503 0.88116 1.20432 1.02539 0.97948 0.88997 1.19898 0.93493 0.96373 0.96432 1.21262 1.00077 0.95370 0.96123 1.21125 0.95949 0.99550 0.95663 1.21034 0.94252 0.97545 1.00866 1.20921 0.88976 0.99670 0.96468 1.98370 1.31191 1.94903 1.80257 1.20997 0.96953 1.00156 0.94395 1.20445 0.80180 0.84502 0.84776 1.90658 1.38754 1.26978 1.87084 1.45999 1.52906 1.32077 1.05201 1.21532 1.00364 0.94785 0.83923 1.20592 0.96828 0.86565 0.90593 0.91728 1.23033 0.81193 0.97116 1.00873 1.86570 1.18924 1.84809 1.46028 1.42376 1.34731 0.99401 1.58955 1.19255 1.07644 0.87443 1.23488 0.91171 1.24742 0.98087 0.97177 1.00446 1.69682 1.27158 1.16212 1.44194 0.86166 0.79134 0.81929 0.79171 1.20596 1.21905 1.21829 0.92180 0.91571 0.91391 0.89590 0.90064 0.85112 0.85058 0.85186 0.84894 0.75424 0.92254 0.90669 0.93347 0.95557 0.79167 0.77687 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.67 37.15 0.32 -1.28 16 2 C -0.11 -1.32 2.71 -91.77 -0.25 -1.56 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.06 -0.70 4.19 -27.88 -0.12 -0.81 16 5 C -0.06 -0.63 4.70 -104.63 -0.49 -1.12 16 6 C -0.11 -1.06 9.70 -39.58 -0.38 -1.45 16 7 C -0.10 -0.91 10.05 -39.59 -0.40 -1.31 16 8 C -0.12 -1.06 9.83 -39.55 -0.39 -1.45 16 9 C -0.03 -0.33 6.32 -39.49 -0.25 -0.58 16 10 Cl -0.08 -0.72 28.96 -51.86 -1.50 -2.22 16 11 C -0.11 -1.06 7.77 -39.54 -0.31 -1.36 16 12 C 0.52 8.27 7.15 -10.98 -0.08 8.19 16 13 O -0.56 -10.53 15.92 5.56 0.09 -10.44 16 14 N -0.71 -11.77 5.28 -60.29 -0.32 -12.09 16 15 C 0.12 2.08 5.12 -4.04 -0.02 2.06 16 16 C 0.17 3.08 2.84 -67.93 -0.19 2.89 16 17 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 18 C 0.06 1.01 6.86 37.16 0.25 1.27 16 19 O -0.56 -9.91 12.64 -35.23 -0.45 -10.35 16 20 N -0.71 -16.65 4.51 -53.42 -0.24 -16.89 16 21 C -0.25 -6.39 9.93 -15.06 -0.15 -6.54 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -26.83 13.06 55.49 0.72 -26.10 16 25 Si 0.90 21.43 29.55 -169.99 -5.02 16.40 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 31 H 0.07 0.69 6.28 -51.93 -0.33 0.36 16 32 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 33 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.21 8.05 -52.49 -0.42 0.78 16 38 H 0.41 6.83 7.56 -40.82 -0.31 6.52 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.50 7.39 -51.93 -0.38 1.11 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.36 4.62 9.12 45.56 0.42 5.04 16 44 H 0.39 10.11 7.80 -40.82 -0.32 9.80 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -31.43 391.42 -9.28 -40.71 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -5.91 Total: 18.47 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.55 Total: -3.38 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.17 Total: -55.09 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.36 Total: -20.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.43 -9.28 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676614270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.322 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds