Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46939 * 2 1 4 4 N 1.46499 * 109.47206 * 239.99851 * 2 1 3 5 5 C 1.36941 * 119.99920 * 85.00205 * 4 2 1 6 6 H 1.08004 * 120.00020 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99620 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00423 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47565 * 119.99418 * 9 7 5 12 12 H 1.48498 * 109.47199 * 239.99983 * 9 7 5 13 13 C 1.52995 * 109.47011 * 119.99753 * 2 1 3 14 14 H 1.08997 * 109.51857 * 299.90184 * 13 2 1 15 15 C 1.52878 * 109.62461 * 179.90598 * 13 2 1 16 16 N 1.47152 * 108.60719 * 187.89881 * 15 13 2 17 17 C 1.34784 * 120.98278 * 230.50279 * 16 15 13 18 18 O 1.21283 * 119.99649 * 359.71768 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.44664 * 17 16 15 20 20 O 1.42905 * 109.47007 * 179.97438 * 19 17 16 21 21 C 1.36230 * 117.00262 * 179.97438 * 20 19 17 22 22 C 1.38662 * 122.58427 * 179.73671 * 21 20 19 23 23 C 1.33436 * 114.88005 * 179.76213 * 22 21 20 24 24 S 1.75865 * 109.66049 * 0.47620 * 23 22 21 25 25 C 1.33629 * 122.58307 * 0.02562 * 21 20 19 26 26 C 1.47159 * 118.03648 * 50.23000 * 16 15 13 27 27 C 1.53296 * 108.38013 * 309.71446 * 26 16 15 28 28 O 1.42959 * 109.22335 * 52.30255 * 27 26 16 29 29 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47406 * 300.00165 * 1 2 3 31 31 H 1.09003 * 109.46822 * 60.00396 * 1 2 3 32 32 H 0.97002 * 120.00177 * 264.99939 * 4 2 1 33 33 H 0.97004 * 119.99673 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.61943 * 68.08122 * 15 13 2 35 35 H 1.08998 * 109.52652 * 307.66606 * 15 13 2 36 36 H 1.09001 * 109.46809 * 299.99238 * 19 17 16 37 37 H 1.08993 * 109.47525 * 59.99679 * 19 17 16 38 38 H 1.07999 * 122.55898 * 359.97403 * 22 21 20 39 39 H 1.08007 * 125.16652 * 180.18906 * 23 22 21 40 40 H 1.07996 * 125.19764 * 359.97438 * 25 21 20 41 41 H 1.08998 * 109.67882 * 69.43880 * 26 16 15 42 42 H 1.08997 * 109.67949 * 189.95197 * 26 16 15 43 43 H 1.09002 * 109.50466 * 172.22804 * 27 26 16 44 44 H 1.08994 * 109.51326 * 292.32268 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4244 7 6 2.6114 -0.6619 -3.5093 8 7 2.9244 -1.9391 -3.4501 9 14 2.7906 0.2700 -5.1182 10 1 2.3767 1.6825 -4.9208 11 1 4.2074 0.2263 -5.5605 12 1 1.9294 -0.3577 -6.1524 13 6 2.0400 -0.7212 1.2492 14 1 1.6785 -0.2069 2.1397 15 6 3.5688 -0.7253 1.2516 16 7 4.0343 -1.5825 2.3533 17 6 4.9520 -1.1407 3.2361 18 8 5.4105 -0.0233 3.1260 19 6 5.4038 -2.0330 4.3634 20 8 6.3732 -1.3448 5.1564 21 6 6.8872 -2.0156 6.2248 22 6 7.8377 -1.4606 7.0681 23 6 8.2306 -2.2511 8.0687 24 16 7.3897 -3.7925 7.9701 25 6 6.5184 -3.2613 6.5377 26 6 3.4637 -2.9343 2.4665 27 6 1.9360 -2.8206 2.4080 28 8 1.5639 -2.0692 1.2502 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2491 -1.6318 -1.1526 33 1 3.2478 -2.3963 -4.2421 34 1 3.9373 0.2904 1.3959 35 1 3.9335 -1.1172 0.3022 36 1 4.5472 -2.2964 4.9838 37 1 5.8481 -2.9399 3.9533 38 1 8.2276 -0.4632 6.9279 39 1 8.9583 -1.9865 8.8217 40 1 5.7954 -3.8515 5.9942 41 1 3.8177 -3.5524 1.6415 42 1 3.7632 -3.3810 3.4146 43 1 1.4988 -3.8175 2.3513 44 1 1.5741 -2.3147 3.3031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717619053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -50.171228 kcal Electronic energy + Delta-G solvation = -27402.049496 eV Core-core repulsion = 23447.998332 eV Total energy + Delta-G solvation = -3954.051164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69092 -39.80500 -38.31583 -36.18466 -35.55529 -34.58764 -32.35145 -30.54383 -29.53152 -29.32506 -28.41738 -27.18466 -24.39987 -23.73606 -23.53192 -22.28050 -20.07916 -19.79394 -19.43408 -18.55174 -17.41981 -17.31645 -16.99342 -16.69475 -16.28269 -15.70364 -15.29429 -14.80794 -14.68784 -14.44332 -14.35934 -14.20974 -13.56646 -13.49321 -13.35573 -13.18269 -13.02217 -12.73921 -12.46146 -12.18205 -11.95529 -11.86145 -11.43421 -11.30662 -11.25642 -11.19933 -10.86137 -10.80150 -10.51838 -10.30932 -10.07695 -9.90336 -9.74358 -9.58939 -9.21441 -8.93581 -8.47246 -8.35147 -6.93258 -5.74560 -3.02932 0.60794 1.24565 1.60228 2.33382 2.36080 2.46090 3.28582 3.44858 3.50983 3.52726 3.90823 4.16807 4.49777 4.60362 4.61249 4.70285 4.73506 4.85814 4.89770 4.99427 5.03967 5.25521 5.33406 5.42403 5.52092 5.57249 5.60285 5.63806 5.72250 5.80394 5.82362 5.97714 6.18849 6.27259 6.38584 6.49199 6.64780 6.76909 6.88089 7.12087 7.25099 7.41980 7.72851 8.02293 8.43820 9.56303 10.12700 10.49929 11.47765 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.002231 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.949947 B =12545.704171 C =13024.183433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.061 0.939 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.087 3.913 16 N -0.608 5.608 17 C 0.517 3.483 18 O -0.516 6.516 19 C 0.046 3.954 20 O -0.278 6.278 21 C 0.119 3.881 22 C -0.139 4.139 23 C -0.187 4.187 24 S 0.117 5.883 25 C -0.328 4.328 26 C 0.068 3.932 27 C 0.048 3.952 28 O -0.357 6.357 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.390 0.610 33 H 0.253 0.747 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -5.917 24.902 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.035 4.035 16 N -0.344 5.344 17 C 0.303 3.697 18 O -0.391 6.391 19 C -0.033 4.033 20 O -0.190 6.190 21 C 0.062 3.938 22 C -0.171 4.171 23 C -0.322 4.322 24 S 0.377 5.623 25 C -0.464 4.464 26 C -0.055 4.055 27 C -0.030 4.030 28 O -0.274 6.274 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.170 0.830 39 H 0.191 0.809 40 H 0.184 0.816 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.492 -6.371 25.312 26.673 hybrid contribution 0.123 1.084 -1.563 1.906 sum 5.615 -5.287 23.749 24.970 Atomic orbital electron populations 1.22348 0.98451 1.01567 0.99678 1.20262 0.92810 0.94677 0.85098 0.92149 1.42392 1.77662 1.11001 1.04916 1.19289 1.36396 0.93850 0.87370 0.91133 1.24723 1.02243 0.95939 0.97980 1.69685 1.50889 1.08616 1.28673 0.86149 0.77249 0.78825 0.84153 1.20579 1.21954 1.21980 1.22861 0.92103 0.83393 0.99770 0.92681 1.22415 0.95016 0.96528 0.89494 1.48116 1.41260 1.15824 1.29229 1.19887 0.79741 0.87577 0.82525 1.90755 1.54902 1.19974 1.73494 1.22494 0.92686 0.95553 0.92535 1.86215 1.55190 1.40393 1.37249 1.17922 0.95592 0.90639 0.89629 1.19511 0.99416 1.02835 0.95347 1.25538 1.05926 0.97317 1.03440 1.84174 1.37432 1.15611 1.25082 1.25352 1.13361 1.00568 1.07072 1.22559 0.95896 0.83942 1.03140 1.22877 0.92624 0.97772 0.89749 1.88126 1.75076 1.23722 1.40526 0.92543 0.94844 0.92710 0.77538 0.93660 0.88384 0.88142 0.89153 0.89001 0.82996 0.80936 0.81594 0.89460 0.89767 0.87747 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.35 37.16 0.35 -2.57 16 2 C 0.18 3.56 2.74 -67.93 -0.19 3.37 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.44 4.29 -53.42 -0.23 -17.67 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 9 Si 0.90 22.39 29.55 -169.99 -5.02 17.36 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C 0.08 1.29 2.51 -26.80 -0.07 1.22 16 14 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.09 1.48 5.85 -3.75 -0.02 1.46 16 16 N -0.61 -8.54 3.03 -172.52 -0.52 -9.06 16 17 C 0.52 7.60 7.79 -10.98 -0.09 7.52 16 18 O -0.52 -9.88 15.97 -14.35 -0.23 -10.10 16 19 C 0.05 0.49 3.72 36.00 0.13 0.62 16 20 O -0.28 -3.61 9.74 -40.38 -0.39 -4.01 16 21 C 0.12 1.27 6.64 -41.04 -0.27 0.99 16 22 C -0.14 -1.28 10.17 -41.10 -0.42 -1.70 16 23 C -0.19 -1.33 11.22 29.05 0.33 -1.00 16 24 S 0.12 0.84 23.34 -107.50 -2.51 -1.67 16 25 C -0.33 -2.84 10.09 29.12 0.29 -2.54 16 26 C 0.07 0.71 6.55 -3.53 -0.02 0.69 16 27 C 0.05 0.53 6.98 37.31 0.26 0.80 16 28 O -0.36 -5.77 9.22 -35.23 -0.32 -6.09 16 29 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.39 10.22 7.20 -40.82 -0.29 9.92 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.10 1.77 7.08 -51.93 -0.37 1.41 16 35 H 0.10 2.02 7.25 -51.93 -0.38 1.65 16 36 H 0.09 0.71 7.38 -51.93 -0.38 0.32 16 37 H 0.09 0.77 7.72 -51.93 -0.40 0.37 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.17 1.11 7.02 -52.49 -0.37 0.74 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.55 6.05 -51.93 -0.31 0.24 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -33.96 375.13 -9.06 -43.02 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.25 Total: 7.84 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 0.04 Total: 1.78 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.03 Total: -53.79 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.95 Total: -20.20 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.96 -9.06 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717619053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.151 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds