Wall clock time and date at job start Sat Apr 11 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09002 * 109.51866 * 185.09900 * 13 2 1 15 15 C 1.53297 * 109.51213 * 65.00062 * 13 2 1 16 16 N 1.47155 * 108.38733 * 187.77547 * 15 13 2 17 17 C 1.34770 * 120.98081 * 230.51365 * 16 15 13 18 18 O 1.21278 * 120.00710 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99537 * 179.97438 * 17 16 15 20 20 O 1.42909 * 109.46838 * 179.97438 * 19 17 16 21 21 C 1.36229 * 116.99694 * 180.02562 * 20 19 17 22 22 C 1.38673 * 122.58442 * 179.74349 * 21 20 19 23 23 C 1.33432 * 114.88540 * 179.76100 * 22 21 20 24 24 S 1.75875 * 109.65767 * 0.47204 * 23 22 21 25 25 C 1.33633 * 122.58967 * 0.02562 * 21 20 19 26 26 C 1.47151 * 118.03393 * 50.53528 * 16 15 13 27 27 C 1.53300 * 108.38317 * 309.46327 * 26 16 15 28 28 O 1.42959 * 109.51362 * 305.25671 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.68439 * 307.49823 * 15 13 2 35 35 H 1.08996 * 109.68165 * 68.01434 * 15 13 2 36 36 H 1.08994 * 109.47486 * 299.99900 * 19 17 16 37 37 H 1.09000 * 109.47190 * 60.00320 * 19 17 16 38 38 H 1.07999 * 122.55196 * 359.96733 * 22 21 20 39 39 H 1.08001 * 125.17330 * 180.18743 * 23 22 21 40 40 H 1.07995 * 125.19108 * 359.97438 * 25 21 20 41 41 H 1.08998 * 109.68640 * 69.18679 * 26 16 15 42 42 H 1.09001 * 109.68331 * 189.74087 * 26 16 15 43 43 H 1.08999 * 109.51182 * 172.22719 * 27 26 16 44 44 H 1.08992 * 109.51513 * 292.32682 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 1 3.1262 -0.8014 -1.2054 15 6 1.6350 0.0697 -2.4983 16 7 1.9699 -0.7335 -3.6850 17 6 2.6765 -0.2049 -4.7036 18 8 3.0460 0.9490 -4.6509 19 6 3.0076 -1.0478 -5.9082 20 8 3.7566 -0.2688 -6.8433 21 6 4.1382 -0.8856 -7.9965 22 6 4.8634 -0.2378 -8.9852 23 6 5.1592 -0.9887 -10.0478 24 16 4.4940 -2.6029 -9.8351 25 6 3.8377 -2.1598 -8.2648 26 6 1.5099 -2.1306 -3.7268 27 6 1.9211 -2.8144 -2.4178 28 8 1.4659 -2.0289 -1.3134 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 0.5628 0.2648 -2.4777 35 1 2.1793 1.0135 -2.5276 36 1 3.5980 -1.9097 -5.5975 37 1 2.0849 -1.3895 -6.3772 38 1 5.1686 0.7946 -8.9000 39 1 5.7177 -0.6547 -10.9096 40 1 3.2779 -2.8171 -7.6160 41 1 0.4252 -2.1572 -3.8298 42 1 1.9719 -2.6442 -4.5701 43 1 1.4722 -3.8064 -2.3686 44 1 3.0067 -2.9038 -2.3791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717619056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:52 Heat of formation + Delta-G solvation = -49.624948 kcal Electronic energy + Delta-G solvation = -27141.777210 eV Core-core repulsion = 23187.749734 eV Total energy + Delta-G solvation = -3954.027476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80570 -39.88922 -38.39774 -36.24834 -35.60120 -34.64699 -32.56916 -30.60281 -29.59636 -29.38599 -28.41971 -26.88581 -24.83851 -23.87899 -23.53251 -22.28664 -20.14624 -19.78945 -19.55159 -18.62763 -17.46169 -17.37240 -16.98911 -16.75878 -16.35176 -15.86897 -15.22404 -15.20916 -14.63872 -14.59312 -14.42527 -14.23942 -13.68245 -13.60783 -13.34522 -13.17873 -12.93149 -12.85059 -12.61316 -12.32684 -12.16380 -12.00524 -11.42830 -11.33368 -11.29906 -11.16938 -10.86228 -10.75529 -10.58989 -10.31992 -10.10736 -9.89993 -9.86132 -9.66124 -9.26140 -8.90165 -8.61650 -8.40344 -6.94269 -5.74112 -3.02919 0.56179 1.19876 1.55613 2.20144 2.27795 2.35120 3.16711 3.45077 3.50311 3.51826 3.88604 4.04734 4.43310 4.54378 4.55144 4.60123 4.66074 4.75138 4.85010 4.93879 4.98556 5.09200 5.26557 5.32791 5.47719 5.52508 5.58177 5.60827 5.63178 5.74699 5.77194 5.92572 5.96140 6.13243 6.27088 6.43728 6.62931 6.79095 6.81341 7.06974 7.14590 7.40923 7.71587 7.86793 8.44069 9.56018 10.13102 10.49648 11.48302 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.001981 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.200614 B =14131.042855 C =14217.924517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.084 3.916 16 N -0.610 5.610 17 C 0.518 3.482 18 O -0.515 6.515 19 C 0.046 3.954 20 O -0.278 6.278 21 C 0.119 3.881 22 C -0.140 4.140 23 C -0.186 4.186 24 S 0.119 5.881 25 C -0.328 4.328 26 C 0.069 3.931 27 C 0.045 3.955 28 O -0.356 6.356 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -3.658 -28.654 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.038 4.038 16 N -0.346 5.346 17 C 0.304 3.696 18 O -0.389 6.389 19 C -0.033 4.033 20 O -0.191 6.191 21 C 0.062 3.938 22 C -0.171 4.171 23 C -0.322 4.322 24 S 0.379 5.621 25 C -0.464 4.464 26 C -0.054 4.054 27 C -0.033 4.033 28 O -0.274 6.274 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.170 0.830 39 H 0.191 0.809 40 H 0.184 0.816 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.062 -4.073 -29.131 29.414 hybrid contribution 0.188 1.058 1.586 1.915 sum 0.126 -3.015 -27.545 27.710 Atomic orbital electron populations 1.22420 0.98615 1.01632 0.99592 1.20196 0.92857 0.94654 0.84901 0.92211 1.42350 1.77870 1.10954 1.04868 1.19251 1.36583 0.93874 0.87316 0.91138 1.24744 1.02187 0.95985 0.98041 1.69676 1.50811 1.08642 1.28786 0.86198 0.77260 0.78813 0.83968 1.21756 1.21835 1.20756 1.23003 0.97714 0.82986 0.94677 0.91718 1.22552 1.02179 0.95845 0.83210 1.48072 1.54632 1.13065 1.18838 1.19921 0.78479 0.87781 0.83384 1.90760 1.51572 1.17337 1.79234 1.22482 0.97251 0.94278 0.89276 1.86211 1.69039 1.38016 1.25813 1.17912 0.97344 0.90713 0.87838 1.19509 1.02400 1.02547 0.92691 1.25546 1.06612 0.96993 1.03017 1.84200 1.52016 1.12073 1.13813 1.25356 1.16639 0.99980 1.04396 1.22583 1.01165 0.81522 1.00134 1.22901 0.99656 0.95265 0.85449 1.88120 1.67443 1.25888 1.45948 0.92423 0.94662 0.92844 0.77689 0.93571 0.89790 0.87994 0.88967 0.89018 0.82987 0.80905 0.81597 0.89869 0.89569 0.87655 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.06 37.16 0.34 -2.60 16 2 C 0.18 3.64 2.77 -67.94 -0.19 3.46 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.09 5.10 -53.43 -0.27 -18.36 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 9 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.08 1.26 2.61 -26.58 -0.07 1.19 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 15 C 0.08 1.19 5.82 -3.53 -0.02 1.17 16 16 N -0.61 -7.37 3.02 -172.27 -0.52 -7.89 16 17 C 0.52 6.82 7.79 -10.99 -0.09 6.74 16 18 O -0.51 -9.02 15.97 -14.35 -0.23 -9.25 16 19 C 0.05 0.44 3.72 36.01 0.13 0.57 16 20 O -0.28 -3.36 9.74 -40.38 -0.39 -3.76 16 21 C 0.12 1.18 6.64 -41.03 -0.27 0.91 16 22 C -0.14 -1.21 10.17 -41.10 -0.42 -1.63 16 23 C -0.19 -1.23 11.22 29.05 0.33 -0.91 16 24 S 0.12 0.80 23.34 -107.50 -2.51 -1.71 16 25 C -0.33 -2.63 10.09 29.12 0.29 -2.33 16 26 C 0.07 0.60 6.54 -3.53 -0.02 0.58 16 27 C 0.05 0.51 6.99 37.31 0.26 0.77 16 28 O -0.36 -5.72 9.24 -35.23 -0.33 -6.05 16 29 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 30 H 0.03 0.52 6.42 -51.93 -0.33 0.19 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.39 10.55 7.59 -40.82 -0.31 10.24 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 1.12 6.27 -51.93 -0.33 0.79 16 35 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 36 H 0.09 0.67 7.38 -51.93 -0.38 0.29 16 37 H 0.09 0.62 7.73 -51.93 -0.40 0.22 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.17 0.99 7.02 -52.49 -0.37 0.62 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.46 6.05 -51.93 -0.31 0.15 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -34.83 373.34 -9.02 -43.84 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.12 Total: 6.97 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.03 Total: 0.63 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.07 Total: -53.78 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.95 Total: -19.06 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.83 -9.02 -43.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717619056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.784 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds