Wall clock time and date at job start Sat Apr 11 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09002 * 109.51866 * 185.09900 * 13 2 1 15 15 C 1.53297 * 109.51213 * 65.00062 * 13 2 1 16 16 N 1.47155 * 108.38733 * 187.77547 * 15 13 2 17 17 C 1.34770 * 120.98081 * 230.51365 * 16 15 13 18 18 O 1.21278 * 120.00710 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99537 * 179.97438 * 17 16 15 20 20 O 1.42909 * 109.46838 * 179.97438 * 19 17 16 21 21 C 1.36229 * 116.99694 * 180.02562 * 20 19 17 22 22 C 1.38673 * 122.58442 * 179.74349 * 21 20 19 23 23 C 1.33432 * 114.88540 * 179.76100 * 22 21 20 24 24 S 1.75875 * 109.65767 * 0.47204 * 23 22 21 25 25 C 1.33633 * 122.58967 * 0.02562 * 21 20 19 26 26 C 1.47151 * 118.03393 * 50.53528 * 16 15 13 27 27 C 1.53300 * 108.38317 * 309.46327 * 26 16 15 28 28 O 1.42959 * 109.51362 * 305.25671 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.68439 * 307.49823 * 15 13 2 35 35 H 1.08996 * 109.68165 * 68.01434 * 15 13 2 36 36 H 1.08994 * 109.47486 * 299.99900 * 19 17 16 37 37 H 1.09000 * 109.47190 * 60.00320 * 19 17 16 38 38 H 1.07999 * 122.55196 * 359.96733 * 22 21 20 39 39 H 1.08001 * 125.17330 * 180.18743 * 23 22 21 40 40 H 1.07995 * 125.19108 * 359.97438 * 25 21 20 41 41 H 1.08998 * 109.68640 * 69.18679 * 26 16 15 42 42 H 1.09001 * 109.68331 * 189.74087 * 26 16 15 43 43 H 1.08999 * 109.51182 * 172.22719 * 27 26 16 44 44 H 1.08992 * 109.51513 * 292.32682 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 1 3.1262 -0.8014 -1.2054 15 6 1.6350 0.0697 -2.4983 16 7 1.9699 -0.7335 -3.6850 17 6 2.6765 -0.2049 -4.7036 18 8 3.0460 0.9490 -4.6509 19 6 3.0076 -1.0478 -5.9082 20 8 3.7566 -0.2688 -6.8433 21 6 4.1382 -0.8856 -7.9965 22 6 4.8634 -0.2378 -8.9852 23 6 5.1592 -0.9887 -10.0478 24 16 4.4940 -2.6029 -9.8351 25 6 3.8377 -2.1598 -8.2648 26 6 1.5099 -2.1306 -3.7268 27 6 1.9211 -2.8144 -2.4178 28 8 1.4659 -2.0289 -1.3134 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 0.5628 0.2648 -2.4777 35 1 2.1793 1.0135 -2.5276 36 1 3.5980 -1.9097 -5.5975 37 1 2.0849 -1.3895 -6.3772 38 1 5.1686 0.7946 -8.9000 39 1 5.7177 -0.6547 -10.9096 40 1 3.2779 -2.8171 -7.6160 41 1 0.4252 -2.1572 -3.8298 42 1 1.9719 -2.6442 -4.5701 43 1 1.4722 -3.8064 -2.3686 44 1 3.0067 -2.9038 -2.3791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717619056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:52 Heat of formation + Delta-G solvation = -73.485758 kcal Electronic energy + Delta-G solvation = -27142.811892 eV Core-core repulsion = 23187.749734 eV Total energy + Delta-G solvation = -3955.062158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73899 -40.72266 -39.51727 -37.15469 -36.90071 -35.83726 -34.35415 -32.08891 -30.41019 -30.01910 -29.97268 -28.02992 -26.38815 -25.01611 -24.51534 -23.50189 -21.24921 -20.78861 -20.49791 -19.36392 -19.19981 -18.18879 -18.00523 -17.56203 -17.49260 -17.00364 -16.57830 -16.22922 -16.07385 -15.70966 -15.47967 -15.12017 -15.02377 -14.70223 -14.48003 -14.26850 -14.01221 -13.69682 -13.68169 -13.63028 -13.23529 -13.01125 -12.83805 -12.79196 -12.45137 -12.40621 -12.18359 -12.01584 -11.85860 -11.83719 -11.64892 -11.59696 -11.21587 -10.94935 -10.90654 -9.79965 -9.68333 -9.00939 -8.97087 -7.92687 -5.21139 0.01485 0.67390 0.99973 1.31252 1.38942 1.47261 1.48858 1.57088 1.71531 2.42728 2.56533 2.77806 3.23110 3.41048 3.55705 3.82137 3.91873 3.92415 3.98751 4.00483 4.01496 4.13066 4.31306 4.34566 4.36862 4.41801 4.46428 4.59741 4.62229 4.78294 4.83914 4.92543 4.94529 4.96038 5.09088 5.17600 5.22176 5.26356 5.51545 5.62375 6.05993 6.23584 6.24846 6.29504 6.89525 7.35435 8.10984 8.35756 9.30750 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.001981 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.200614 B =14131.042855 C =14217.924517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.056 0.944 4 N -0.732 5.732 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.287 1.287 11 H -0.296 1.296 12 H -0.270 1.270 13 C 0.092 3.908 14 H 0.039 0.961 15 C 0.093 3.907 16 N -0.608 5.608 17 C 0.513 3.487 18 O -0.570 6.570 19 C 0.050 3.950 20 O -0.312 6.312 21 C 0.092 3.908 22 C -0.169 4.169 23 C -0.178 4.178 24 S 0.145 5.855 25 C -0.329 4.329 26 C 0.071 3.929 27 C 0.035 3.965 28 O -0.381 6.381 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.199 0.801 40 H 0.188 0.812 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -4.722 -30.964 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 H 0.074 0.926 4 N -0.372 5.372 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.214 1.214 11 H -0.223 1.223 12 H -0.195 1.195 13 C 0.032 3.968 14 H 0.057 0.943 15 C -0.030 4.030 16 N -0.343 5.343 17 C 0.302 3.698 18 O -0.448 6.448 19 C -0.028 4.028 20 O -0.226 6.226 21 C 0.036 3.964 22 C -0.200 4.200 23 C -0.314 4.314 24 S 0.405 5.595 25 C -0.464 4.464 26 C -0.050 4.050 27 C -0.042 4.042 28 O -0.300 6.300 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.166 0.834 39 H 0.216 0.784 40 H 0.206 0.794 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.976 -5.141 -31.491 31.923 hybrid contribution 0.463 1.324 2.165 2.579 sum -0.513 -3.817 -29.327 29.578 Atomic orbital electron populations 1.22211 0.96748 1.01286 1.00506 1.20433 0.94007 0.94456 0.84525 0.92568 1.42516 1.78317 1.10468 1.05931 1.19645 1.34891 0.94201 0.88326 0.90589 1.25554 1.03068 0.96934 1.01425 1.69834 1.52624 1.10185 1.29298 0.85157 0.76855 0.78012 0.79848 1.21436 1.22314 1.19509 1.22530 0.95962 0.83958 0.94325 0.94269 1.22259 1.02521 0.95031 0.83173 1.48144 1.54143 1.14233 1.17750 1.20664 0.77348 0.87508 0.84321 1.90733 1.53702 1.19922 1.80471 1.22600 0.99097 0.93490 0.87642 1.86151 1.69919 1.39621 1.26908 1.18148 0.98829 0.91718 0.87668 1.19675 1.03753 1.03010 0.93598 1.25890 1.05647 0.96832 1.03011 1.84142 1.51108 1.11515 1.12714 1.25685 1.16023 0.99487 1.05212 1.22838 1.02671 0.79376 1.00131 1.23250 0.99665 0.96054 0.85237 1.88066 1.67642 1.25656 1.48591 0.93303 0.91078 0.94508 0.79237 0.94139 0.88458 0.89646 0.86338 0.85581 0.83358 0.78394 0.79443 0.87978 0.85269 0.84971 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.06 71.98 0.65 -4.60 16 2 C 0.17 6.99 2.77 44.99 0.12 7.11 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -37.76 5.10 -322.95 -1.65 -39.41 16 5 C -0.24 -13.47 9.93 84.03 0.83 -12.64 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 8 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.97 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.09 3.08 2.61 30.69 0.08 3.16 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C 0.09 2.58 5.82 86.35 0.50 3.08 16 16 N -0.61 -13.60 3.02 -817.34 -2.47 -16.07 16 17 C 0.51 12.94 7.79 87.66 0.68 13.62 16 18 O -0.57 -20.41 15.97 16.01 0.26 -20.15 16 19 C 0.05 0.81 3.72 71.24 0.26 1.08 16 20 O -0.31 -7.30 9.74 -77.13 -0.75 -8.05 16 21 C 0.09 1.72 6.64 21.33 0.14 1.86 16 22 C -0.17 -2.81 10.17 21.28 0.22 -2.59 16 23 C -0.18 -2.02 11.22 66.73 0.75 -1.28 16 24 S 0.14 1.55 23.34 -56.49 -1.32 0.23 16 25 C -0.33 -4.36 10.09 66.77 0.67 -3.68 16 26 C 0.07 0.99 6.54 86.36 0.56 1.55 16 27 C 0.03 0.70 6.99 72.08 0.50 1.21 16 28 O -0.38 -11.98 9.24 -148.98 -1.38 -13.36 16 29 H 0.05 1.81 7.56 -2.39 -0.02 1.79 16 30 H 0.07 1.99 6.42 -2.39 -0.02 1.97 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.38 21.08 7.59 -92.70 -0.70 20.37 16 33 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.10 2.41 6.27 -2.39 -0.01 2.40 16 35 H 0.09 2.66 7.08 -2.39 -0.02 2.64 16 36 H 0.12 1.29 7.38 -2.39 -0.02 1.27 16 37 H 0.13 1.17 7.73 -2.39 -0.02 1.15 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.19 1.45 7.02 -2.91 -0.02 1.43 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.13 0.71 6.05 -2.39 -0.01 0.69 16 43 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.42 373.34 1.78 -77.63 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.32 Total: 26.37 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.46 Total: 3.82 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -3.83 Total: -115.47 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.87 Total: -41.56 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Total: -79.42 1.78 -77.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717619056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.147 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds