Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 5 5 C 1.34222 * 117.00137 * 90.00375 * 4 2 1 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 2 8 8 S 1.80997 * 109.47482 * 180.27682 * 7 5 4 9 9 C 1.76202 * 100.00062 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31632 * 119.99638 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99763 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47283 * 90.00150 * 13 11 9 15 15 H 1.48501 * 109.46930 * 209.99724 * 13 11 9 16 16 H 1.48499 * 109.47515 * 329.99919 * 13 11 9 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 O 1.21276 * 120.00460 * 119.99710 * 17 2 1 19 19 N 1.34782 * 119.99734 * 299.99483 * 17 2 1 20 20 C 1.46502 * 119.99909 * 180.02562 * 19 17 2 21 21 C 1.47198 * 109.46936 * 60.00099 * 20 19 17 22 22 N 4.99263 * 130.96187 * 104.44804 * 2 1 3 23 23 C 1.52994 * 109.47082 * 299.99868 * 20 19 17 24 24 C 1.52994 * 109.47110 * 179.97438 * 23 20 19 25 25 C 1.53003 * 109.47309 * 60.00295 * 24 23 20 26 26 C 1.53003 * 109.46900 * 300.00066 * 25 24 23 27 27 C 1.53000 * 109.46877 * 179.97438 * 20 19 17 28 28 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 29 29 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 30 30 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 32 32 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 33 33 H 0.96999 * 119.99316 * 180.02562 * 12 11 9 34 34 H 0.97002 * 120.00077 * 359.97438 * 19 17 2 35 35 H 1.09002 * 109.47233 * 300.00320 * 23 20 19 36 36 H 1.09004 * 109.47362 * 60.00344 * 23 20 19 37 37 H 1.09002 * 109.47338 * 300.00261 * 24 23 20 38 38 H 1.09003 * 109.47568 * 180.02562 * 24 23 20 39 39 H 1.08996 * 109.47386 * 180.02562 * 25 24 23 40 40 H 1.09002 * 109.46948 * 59.99727 * 25 24 23 41 41 H 1.09005 * 109.47090 * 300.00137 * 26 25 24 42 42 H 1.08999 * 109.47092 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47581 * 300.00040 * 27 20 19 44 44 H 1.09002 * 109.46952 * 59.99979 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1855 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 16 2.9021 0.6860 -4.8324 9 6 3.4912 -0.3105 -6.1609 10 1 3.6334 -1.3715 -6.0181 11 6 3.7725 0.2683 -7.3907 12 7 3.5987 1.5614 -7.5647 13 14 4.3963 -0.7882 -8.7992 14 1 3.2432 -1.2995 -9.5829 15 1 5.2708 0.0272 -9.6800 16 1 5.1709 -1.9322 -8.2547 17 6 2.0322 -0.7105 1.2305 18 8 2.7294 -1.6966 1.1193 19 7 1.7066 -0.2499 2.4546 20 6 2.1953 -0.9402 3.6508 21 6 3.6673 -0.9397 3.6506 22 7 4.8029 -0.9407 3.6509 23 6 1.6857 -2.3828 3.6511 24 6 2.1966 -3.1039 4.9000 25 6 1.6871 -2.3829 6.1496 26 6 2.1966 -0.9402 6.1493 27 6 1.6857 -0.2185 4.9000 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.6927 -1.0400 -3.3574 32 1 2.0169 -1.3359 -3.8795 33 1 3.7949 1.9657 -8.4243 34 1 1.1493 0.5390 2.5436 35 1 0.5957 -2.3831 3.6512 36 1 2.0491 -2.8967 2.7612 37 1 3.2866 -3.1036 4.8995 38 1 1.8340 -4.1318 4.9000 39 1 2.0514 -2.8963 7.0393 40 1 0.5970 -2.3832 6.1501 41 1 3.2867 -0.9399 6.1487 42 1 1.8333 -0.4264 7.0393 43 1 2.0491 0.8090 4.8996 44 1 0.5957 -0.2185 4.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046255445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -105.210971 kcal Electronic energy + Delta-G solvation = -26838.688641 eV Core-core repulsion = 22882.250775 eV Total energy + Delta-G solvation = -3956.437867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24130 -40.20435 -38.66287 -36.24328 -36.06158 -34.86690 -32.48848 -32.48706 -31.46408 -30.01572 -29.32254 -25.59038 -25.13544 -23.84082 -23.50474 -21.82520 -21.03808 -20.31210 -18.24456 -18.14259 -17.47585 -17.17197 -16.70231 -16.10272 -15.76687 -15.32121 -15.16136 -14.84898 -14.84510 -14.33695 -14.12180 -13.90005 -13.72385 -13.52481 -13.41835 -13.09775 -12.86276 -12.75318 -12.69558 -12.61497 -12.43539 -12.24130 -12.16828 -11.76796 -11.69085 -11.23568 -11.10458 -11.07244 -11.06725 -10.89535 -10.82994 -10.77762 -10.15737 -9.93371 -9.84571 -9.79053 -9.11565 -8.38126 -6.61273 -6.27779 -4.00439 1.84953 2.13683 2.49387 2.53319 2.57160 3.02391 3.21137 3.25718 3.30028 3.43810 3.51877 3.98908 4.08025 4.14680 4.20136 4.43916 4.52211 4.58758 4.61396 4.76964 4.82066 4.86446 4.92085 5.02477 5.08350 5.18129 5.23295 5.30062 5.41144 5.44274 5.51442 5.53126 5.54665 5.67310 5.76821 5.77442 5.81987 5.82541 5.88206 6.08813 6.51341 6.88152 7.27592 7.55843 7.71687 8.05377 8.30588 9.18045 10.79745 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.002018 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.166825 B =13871.421761 C =14187.047219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.114 0.886 4 O -0.332 6.332 5 C 0.482 3.518 6 O -0.487 6.487 7 C -0.128 4.128 8 S -0.057 6.057 9 C -0.535 4.535 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.922 3.078 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.271 1.271 17 C 0.521 3.479 18 O -0.498 6.498 19 N -0.722 5.722 20 C 0.284 3.716 21 C 0.203 3.797 22 N -0.409 5.409 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.269 0.731 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 -5.024 29.175 31.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.131 0.869 4 O -0.249 6.249 5 C 0.323 3.677 6 O -0.372 6.372 7 C -0.275 4.275 8 S 0.169 5.831 9 C -0.684 4.684 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.748 3.252 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.196 1.196 17 C 0.306 3.694 18 O -0.370 6.370 19 N -0.379 5.379 20 C 0.194 3.806 21 C -0.117 4.117 22 N -0.084 5.084 23 C -0.168 4.168 24 C -0.160 4.160 25 C -0.160 4.160 26 C -0.159 4.159 27 C -0.158 4.158 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.868 -4.112 28.995 30.598 hybrid contribution 0.026 -1.391 -0.978 1.701 sum -8.842 -5.503 28.017 29.890 Atomic orbital electron populations 1.22172 0.91631 1.04109 1.04315 1.22310 0.96074 0.97810 0.82820 0.86868 1.86677 1.77541 1.41559 1.19088 1.23472 0.73980 0.85938 0.84301 1.90658 1.47040 1.16155 1.83341 1.23315 1.04704 1.05915 0.93614 1.85361 1.86564 1.08670 1.02499 1.22847 1.51579 0.96486 0.97443 0.90517 1.25006 0.94935 0.95398 0.98192 1.70011 1.45472 1.09949 1.24836 0.86111 0.78767 0.79700 0.80623 1.20168 1.20713 1.19556 1.20426 0.80070 0.84817 0.84078 1.90763 1.35300 1.24817 1.86100 1.45997 1.54932 1.33022 1.03962 1.17701 0.81034 0.95559 0.86259 1.29097 0.94983 0.93833 0.93770 1.81169 1.12751 1.07386 1.07128 1.22041 1.01879 0.92116 1.00803 1.21578 1.01195 0.99673 0.93584 1.21606 1.01194 0.95112 0.98084 1.21570 1.01313 0.96078 0.96923 1.21868 1.02539 0.99605 0.91742 0.90291 0.90011 0.90712 0.87685 0.87672 0.92074 0.75214 0.89454 0.88647 0.91909 0.90634 0.91399 0.91163 0.91717 0.90400 0.90059 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.44 37.16 0.35 -1.06 16 2 C 0.07 0.84 2.98 -27.88 -0.08 0.75 16 3 H 0.11 1.36 7.16 -51.93 -0.37 0.99 16 4 O -0.33 -5.48 9.41 -45.88 -0.43 -5.91 16 5 C 0.48 9.21 7.95 36.00 0.29 9.50 16 6 O -0.49 -10.16 15.08 -18.76 -0.28 -10.44 16 7 C -0.13 -2.65 6.27 36.00 0.23 -2.43 16 8 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 9 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 10 H 0.08 2.06 7.80 -52.49 -0.41 1.65 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 13 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.52 6.02 6.65 -10.98 -0.07 5.95 16 18 O -0.50 -7.84 13.71 -14.10 -0.19 -8.03 16 19 N -0.72 -5.08 4.98 -50.23 -0.25 -5.33 16 20 C 0.28 2.03 0.77 -134.61 -0.10 1.93 16 21 C 0.20 2.33 10.26 -20.77 -0.21 2.11 16 22 N -0.41 -5.95 18.53 42.14 0.78 -5.17 16 23 C -0.13 -0.90 4.64 -26.74 -0.12 -1.02 16 24 C -0.12 -0.73 5.70 -26.73 -0.15 -0.89 16 25 C -0.12 -0.48 5.92 -26.73 -0.16 -0.64 16 26 C -0.12 -0.49 5.70 -26.70 -0.15 -0.64 16 27 C -0.12 -0.43 4.83 -26.70 -0.13 -0.55 16 28 H 0.08 0.36 7.57 -51.93 -0.39 -0.03 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 2.10 8.14 -51.92 -0.42 1.68 16 32 H 0.11 2.01 8.14 -51.91 -0.42 1.59 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.41 1.37 7.89 -40.82 -0.32 1.05 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.97 6.17 -51.93 -0.32 0.65 16 37 H 0.06 0.50 7.23 -51.93 -0.38 0.13 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.06 0.39 7.22 -51.93 -0.38 0.01 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -37.14 381.39 -7.61 -44.75 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.35 Total: -3.34 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.13 Total: 0.19 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 1.26 Total: -35.55 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.91 Total: -24.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.14 -7.61 -44.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046255445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.460 kcal (2) G-P(sol) polarization free energy of solvation -37.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds