Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 5 5 C 1.34222 * 117.00137 * 90.00375 * 4 2 1 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 2 8 8 S 1.80997 * 109.47482 * 180.27682 * 7 5 4 9 9 C 1.76202 * 100.00062 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31632 * 119.99638 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99763 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47283 * 90.00150 * 13 11 9 15 15 H 1.48501 * 109.46930 * 209.99724 * 13 11 9 16 16 H 1.48499 * 109.47515 * 329.99919 * 13 11 9 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 O 1.21276 * 120.00460 * 119.99710 * 17 2 1 19 19 N 1.34782 * 119.99734 * 299.99483 * 17 2 1 20 20 C 1.46502 * 119.99909 * 180.02562 * 19 17 2 21 21 C 1.47198 * 109.46936 * 60.00099 * 20 19 17 22 22 N 4.99263 * 130.96187 * 104.44804 * 2 1 3 23 23 C 1.52994 * 109.47082 * 299.99868 * 20 19 17 24 24 C 1.52994 * 109.47110 * 179.97438 * 23 20 19 25 25 C 1.53003 * 109.47309 * 60.00295 * 24 23 20 26 26 C 1.53003 * 109.46900 * 300.00066 * 25 24 23 27 27 C 1.53000 * 109.46877 * 179.97438 * 20 19 17 28 28 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 29 29 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 30 30 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 32 32 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 33 33 H 0.96999 * 119.99316 * 180.02562 * 12 11 9 34 34 H 0.97002 * 120.00077 * 359.97438 * 19 17 2 35 35 H 1.09002 * 109.47233 * 300.00320 * 23 20 19 36 36 H 1.09004 * 109.47362 * 60.00344 * 23 20 19 37 37 H 1.09002 * 109.47338 * 300.00261 * 24 23 20 38 38 H 1.09003 * 109.47568 * 180.02562 * 24 23 20 39 39 H 1.08996 * 109.47386 * 180.02562 * 25 24 23 40 40 H 1.09002 * 109.46948 * 59.99727 * 25 24 23 41 41 H 1.09005 * 109.47090 * 300.00137 * 26 25 24 42 42 H 1.08999 * 109.47092 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47581 * 300.00040 * 27 20 19 44 44 H 1.09002 * 109.46952 * 59.99979 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1855 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 16 2.9021 0.6860 -4.8324 9 6 3.4912 -0.3105 -6.1609 10 1 3.6334 -1.3715 -6.0181 11 6 3.7725 0.2683 -7.3907 12 7 3.5987 1.5614 -7.5647 13 14 4.3963 -0.7882 -8.7992 14 1 3.2432 -1.2995 -9.5829 15 1 5.2708 0.0272 -9.6800 16 1 5.1709 -1.9322 -8.2547 17 6 2.0322 -0.7105 1.2305 18 8 2.7294 -1.6966 1.1193 19 7 1.7066 -0.2499 2.4546 20 6 2.1953 -0.9402 3.6508 21 6 3.6673 -0.9397 3.6506 22 7 4.8029 -0.9407 3.6509 23 6 1.6857 -2.3828 3.6511 24 6 2.1966 -3.1039 4.9000 25 6 1.6871 -2.3829 6.1496 26 6 2.1966 -0.9402 6.1493 27 6 1.6857 -0.2185 4.9000 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.6927 -1.0400 -3.3574 32 1 2.0169 -1.3359 -3.8795 33 1 3.7949 1.9657 -8.4243 34 1 1.1493 0.5390 2.5436 35 1 0.5957 -2.3831 3.6512 36 1 2.0491 -2.8967 2.7612 37 1 3.2866 -3.1036 4.8995 38 1 1.8340 -4.1318 4.9000 39 1 2.0514 -2.8963 7.0393 40 1 0.5970 -2.3832 6.1501 41 1 3.2867 -0.9399 6.1487 42 1 1.8333 -0.4264 7.0393 43 1 2.0491 0.8090 4.8996 44 1 0.5957 -0.2185 4.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046255445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -129.941033 kcal Electronic energy + Delta-G solvation = -26839.761017 eV Core-core repulsion = 22882.250775 eV Total energy + Delta-G solvation = -3957.510243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16337 -41.38392 -39.51659 -37.59772 -36.96993 -35.63482 -34.63119 -33.42065 -31.86145 -31.24012 -30.27546 -27.73364 -25.97837 -24.50114 -23.95750 -22.88597 -21.89370 -21.12292 -19.99714 -19.16142 -18.73695 -18.24069 -17.53790 -17.23357 -16.96485 -16.89771 -16.30078 -16.10388 -15.68094 -15.49360 -15.32931 -14.74383 -14.61060 -14.50947 -14.26601 -14.24526 -14.08997 -13.72264 -13.68549 -13.34735 -13.22043 -13.18900 -13.10143 -12.91378 -12.80360 -12.72033 -12.66150 -12.11217 -12.01184 -11.81300 -11.71565 -11.68799 -11.46972 -11.34452 -11.17662 -10.74308 -10.53125 -10.42627 -8.75393 -8.39715 -6.19091 0.75998 1.03008 1.19690 1.28598 1.41364 1.41563 1.53875 1.63517 1.76849 2.21306 2.26159 2.73597 2.95270 3.23739 3.33991 3.55821 3.65038 3.68867 3.81161 3.86085 4.06643 4.11952 4.13927 4.18083 4.39973 4.41886 4.50066 4.63560 4.66947 4.68341 4.82710 4.88011 5.08539 5.10063 5.15114 5.16435 5.17908 5.19614 5.33321 5.37773 5.39429 5.50131 6.16219 6.21735 6.41203 6.58413 6.93112 7.02243 8.69455 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.002018 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.166825 B =13871.421761 C =14187.047219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.059 3.941 3 H 0.115 0.885 4 O -0.338 6.338 5 C 0.492 3.508 6 O -0.509 6.509 7 C -0.112 4.112 8 S -0.126 6.126 9 C -0.551 4.551 10 H 0.083 0.917 11 C 0.017 3.983 12 N -0.907 5.907 13 Si 0.999 3.001 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.262 1.262 17 C 0.524 3.476 18 O -0.546 6.546 19 N -0.696 5.696 20 C 0.279 3.721 21 C 0.222 3.778 22 N -0.477 5.477 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.113 4.113 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.273 0.727 34 H 0.433 0.567 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.035 0.965 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -5.499 30.909 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.000 4.000 3 H 0.133 0.867 4 O -0.254 6.254 5 C 0.334 3.666 6 O -0.396 6.396 7 C -0.260 4.260 8 S 0.101 5.899 9 C -0.699 4.699 10 H 0.101 0.899 11 C -0.188 4.188 12 N -0.544 5.544 13 Si 0.820 3.180 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.186 1.186 17 C 0.309 3.691 18 O -0.422 6.422 19 N -0.354 5.354 20 C 0.189 3.811 21 C -0.097 4.097 22 N -0.153 5.153 23 C -0.165 4.165 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.151 4.151 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.274 0.726 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.389 -4.560 30.783 33.138 hybrid contribution 0.761 -1.279 -1.334 1.999 sum -10.628 -5.840 29.449 31.848 Atomic orbital electron populations 1.22230 0.88409 1.04967 1.05951 1.22810 0.98603 0.97398 0.81175 0.86736 1.86610 1.77399 1.41716 1.19692 1.22950 0.73624 0.85409 0.84611 1.90645 1.48157 1.16959 1.83862 1.23101 1.05887 1.04150 0.92865 1.85382 1.86844 1.12530 1.05104 1.23192 1.51763 0.96855 0.98079 0.89874 1.26094 0.94835 0.96762 1.01109 1.70150 1.46526 1.11913 1.25766 0.84948 0.78430 0.77842 0.76751 1.18994 1.20122 1.18602 1.20393 0.79469 0.84112 0.85086 1.90768 1.37575 1.27017 1.86847 1.45770 1.53915 1.33210 1.02473 1.18252 0.78420 0.96714 0.87670 1.30094 0.96072 0.91825 0.91723 1.81160 1.15074 1.09673 1.09419 1.22038 1.03693 0.91316 0.99484 1.21586 0.99269 1.00573 0.94654 1.21604 1.02652 0.94615 0.96586 1.21610 0.99660 0.96584 0.98195 1.22004 1.04875 0.99312 0.88886 0.85449 0.91544 0.90220 0.86952 0.85832 0.91765 0.72554 0.86050 0.92309 0.95110 0.89958 0.91304 0.88495 0.94612 0.87995 0.89011 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.44 71.98 0.68 -1.59 16 2 C 0.06 1.34 2.98 29.85 0.09 1.43 16 3 H 0.12 2.62 7.16 -2.39 -0.02 2.60 16 4 O -0.34 -11.06 9.41 -44.98 -0.42 -11.48 16 5 C 0.49 18.89 7.95 71.23 0.57 19.46 16 6 O -0.51 -21.46 15.08 21.94 0.33 -21.13 16 7 C -0.11 -4.67 6.27 71.23 0.45 -4.22 16 8 S -0.13 -6.85 20.57 -56.49 -1.16 -8.01 16 9 C -0.55 -31.44 9.50 67.95 0.65 -30.80 16 10 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 11 C 0.02 0.98 5.49 84.86 0.47 1.45 16 12 N -0.91 -54.79 13.22 21.65 0.29 -54.50 16 13 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 14 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 17 C 0.52 11.49 6.65 87.66 0.58 12.07 16 18 O -0.55 -17.44 13.71 15.78 0.22 -17.22 16 19 N -0.70 -7.90 4.98 -431.21 -2.15 -10.05 16 20 C 0.28 3.43 0.77 1.80 0.00 3.43 16 21 C 0.22 5.16 10.26 89.45 0.92 6.08 16 22 N -0.48 -14.72 18.53 20.00 0.37 -14.35 16 23 C -0.13 -1.53 4.64 30.59 0.14 -1.39 16 24 C -0.12 -1.35 5.70 30.59 0.17 -1.18 16 25 C -0.12 -0.58 5.92 30.60 0.18 -0.40 16 26 C -0.12 -0.64 5.70 30.61 0.17 -0.47 16 27 C -0.11 -0.35 4.83 30.61 0.15 -0.21 16 28 H 0.13 0.55 7.57 -2.38 -0.02 0.53 16 29 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 4.52 8.14 -2.40 -0.02 4.50 16 32 H 0.12 4.68 8.14 -2.39 -0.02 4.66 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.43 0.99 7.89 -92.71 -0.73 0.25 16 35 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.06 1.20 6.17 -2.38 -0.01 1.19 16 37 H 0.03 0.53 7.23 -2.39 -0.02 0.51 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 40 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.03 0.40 7.22 -2.38 -0.02 0.39 16 42 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.14 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: -1.00 -86.77 381.39 5.01 -81.76 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.30 Total: 5.63 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.21 Total: 3.67 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.49 Total: -78.90 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: 0.12 Total: -49.83 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.16 Total: -8.01 kcal Total: -86.77 5.01 -81.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046255445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.180 kcal (2) G-P(sol) polarization free energy of solvation -86.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds