Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47213 * 2 1 4 4 C 1.46497 * 119.99983 * 275.00281 * 3 2 1 5 5 C 1.53001 * 109.46882 * 274.99387 * 4 3 2 6 6 S 1.65604 * 120.00035 * 94.99644 * 3 2 1 7 7 O 1.42105 * 106.40035 * 336.46448 * 6 3 2 8 8 O 1.42098 * 106.40351 * 203.54518 * 6 3 2 9 9 C 1.76203 * 107.21588 * 90.00333 * 6 3 2 10 10 C 1.38373 * 119.84450 * 269.72659 * 9 6 3 11 11 C 1.37943 * 120.14596 * 179.76839 * 10 9 6 12 12 C 1.39643 * 119.84472 * 0.52580 * 11 10 9 13 13 C 1.47736 * 120.14685 * 179.70332 * 12 11 10 14 14 O 1.21590 * 119.99476 * 137.93468 * 13 12 11 15 15 N 1.34769 * 119.99839 * 317.93338 * 13 12 11 16 16 C 1.46503 * 119.99715 * 182.06346 * 15 13 12 17 17 C 1.36880 * 120.00287 * 2.06404 * 15 13 12 18 18 H 1.07994 * 120.00317 * 310.81254 * 17 15 13 19 19 C 1.39054 * 119.99624 * 130.81585 * 17 15 13 20 20 N 1.31359 * 119.99707 * 170.08351 * 19 17 15 21 21 Si 1.86799 * 120.00300 * 350.07671 * 19 17 15 22 22 H 1.48500 * 109.47192 * 94.78875 * 21 19 17 23 23 H 1.48498 * 109.46980 * 214.79201 * 21 19 17 24 24 H 1.48504 * 109.46861 * 334.78945 * 21 19 17 25 25 C 1.39644 * 119.70339 * 359.72887 * 12 11 10 26 26 C 1.37933 * 119.84415 * 359.97438 * 25 12 11 27 27 H 1.08990 * 109.47380 * 299.99582 * 1 2 3 28 28 H 1.09001 * 109.47186 * 60.00547 * 1 2 3 29 29 H 1.09005 * 109.46578 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47508 * 239.99964 * 2 1 3 31 31 H 1.08996 * 109.47378 * 119.99899 * 2 1 3 32 32 H 1.08996 * 109.47376 * 34.99398 * 4 3 2 33 33 H 1.09001 * 109.47119 * 154.99504 * 4 3 2 34 34 H 1.08990 * 109.47568 * 300.00159 * 5 4 3 35 35 H 1.08994 * 109.47084 * 60.00513 * 5 4 3 36 36 H 1.09006 * 109.46646 * 179.97438 * 5 4 3 37 37 H 1.08000 * 119.92752 * 359.97438 * 10 9 6 38 38 H 1.07997 * 120.07488 * 180.23039 * 11 10 9 39 39 H 1.08999 * 109.47388 * 84.70642 * 16 15 13 40 40 H 1.09006 * 109.47137 * 204.70310 * 16 15 13 41 41 H 1.08995 * 109.46914 * 324.70363 * 16 15 13 42 42 H 0.96999 * 120.00449 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.07897 * 179.97438 * 25 12 11 44 44 H 1.07999 * 119.92825 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.5152 1.7840 -1.8917 6 16 2.4121 2.1202 1.4287 7 8 1.6868 1.4415 2.4448 8 8 2.3056 3.5186 1.1999 9 6 4.1169 1.7941 1.7320 10 6 4.4858 0.6723 2.4532 11 6 5.8188 0.4084 2.6902 12 6 6.7963 1.2824 2.2098 13 6 8.2256 1.0097 2.4654 14 8 9.0438 1.1768 1.5816 15 7 8.6225 0.5759 3.6781 16 6 10.0449 0.3488 3.9453 17 6 7.6966 0.3475 4.6600 18 1 6.9508 1.0958 4.8837 19 6 7.7165 -0.8482 5.3697 20 7 6.9617 -0.9922 6.4351 21 14 8.8164 -2.2496 4.8079 22 1 10.1035 -2.1954 5.5466 23 1 8.1442 -3.5457 5.0792 24 1 9.0759 -2.1219 3.3513 25 6 6.4167 2.4155 1.4873 26 6 5.0804 2.6639 1.2523 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3618 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 4.3116 2.0829 -1.2104 35 1 3.5813 0.7125 -2.0800 36 1 3.6190 2.3249 -2.8323 37 1 3.7284 0.0000 2.8286 38 1 6.1056 -0.4694 3.2501 39 1 10.5141 1.2880 4.2384 40 1 10.1518 -0.3776 4.7510 41 1 10.5272 -0.0330 3.0455 42 1 6.9752 -1.8263 6.9300 43 1 7.1676 3.0956 1.1133 44 1 4.7853 3.5396 0.6933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057654033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -69.883921 kcal Electronic energy + Delta-G solvation = -28426.182958 eV Core-core repulsion = 24471.276987 eV Total energy + Delta-G solvation = -3954.905971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.63560 -37.79837 -37.29274 -37.24149 -35.76066 -35.11637 -32.14155 -32.13299 -31.18492 -30.69757 -28.94560 -26.85986 -25.24812 -23.90899 -23.14582 -22.39439 -22.18188 -19.53481 -18.86798 -18.04223 -17.78788 -17.23701 -16.46847 -16.39920 -15.57280 -15.00923 -14.85030 -14.54505 -14.28935 -14.14951 -13.96967 -13.89565 -13.62164 -13.22101 -13.15053 -13.06793 -12.80849 -12.66810 -12.34222 -12.23192 -12.07942 -12.03223 -11.96282 -11.91523 -11.85211 -11.65539 -11.15945 -11.06337 -10.96681 -10.82346 -10.68629 -10.50409 -10.18931 -9.47044 -9.30134 -8.98296 -8.81374 -8.61971 -7.88885 -6.62545 -4.39576 0.41139 0.96018 1.71827 2.88050 2.93994 3.08646 3.15416 3.38456 3.77290 3.94212 4.03306 4.28225 4.33600 4.53827 4.74598 4.90941 4.97263 5.11768 5.15886 5.17552 5.20774 5.22392 5.38243 5.52041 5.53078 5.69254 5.70077 5.73966 5.78476 5.96917 6.02588 6.03132 6.05331 6.10884 6.14967 6.26369 6.36363 6.42723 6.49867 6.58731 6.87020 7.16711 7.23680 7.86260 8.06709 8.71192 9.04752 9.40290 10.45176 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.003698 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.936567 B = 7569.168359 C = 8247.390716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.119 3.881 3 N -0.998 5.998 4 C 0.111 3.889 5 C -0.180 4.180 6 S 2.691 3.309 7 O -0.954 6.954 8 O -0.961 6.961 9 C -0.672 4.672 10 C -0.037 4.037 11 C -0.072 4.072 12 C -0.032 4.032 13 C 0.514 3.486 14 O -0.587 6.587 15 N -0.457 5.457 16 C 0.074 3.926 17 C -0.354 4.354 18 H 0.106 0.894 19 C 0.070 3.930 20 N -0.854 5.854 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.105 4.105 26 C -0.038 4.038 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.766 1.204 -13.201 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.006 4.006 3 N -0.835 5.835 4 C -0.014 4.014 5 C -0.239 4.239 6 S 2.783 3.217 7 O -0.945 6.945 8 O -0.952 6.952 9 C -0.761 4.761 10 C -0.057 4.057 11 C -0.091 4.091 12 C -0.036 4.036 13 C 0.303 3.697 14 O -0.472 6.472 15 N -0.177 5.177 16 C -0.068 4.068 17 C -0.481 4.481 18 H 0.123 0.877 19 C -0.139 4.139 20 N -0.488 5.488 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.125 4.125 26 C -0.058 4.058 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.973 1.619 -12.906 16.390 hybrid contribution 1.355 -1.107 0.032 1.750 sum -8.618 0.512 -12.874 15.501 Atomic orbital electron populations 1.22217 0.95827 1.02499 1.02651 1.21248 0.94581 0.81208 1.03543 1.57640 1.79750 1.23954 1.22204 1.21365 0.98036 0.97138 0.84827 1.22300 0.97591 1.02558 1.01408 1.01959 0.74047 0.73257 0.72407 1.93579 1.70201 1.75320 1.55362 1.93539 1.86677 1.29840 1.85128 1.30763 1.24416 1.06429 1.14491 1.20838 0.97255 0.94186 0.93412 1.21883 0.91298 1.00643 0.95310 1.20286 0.94359 0.94507 0.94412 1.18426 0.87380 0.81585 0.82306 1.90664 1.54149 1.57846 1.44589 1.43514 1.05668 1.58572 1.09919 1.21830 0.83709 1.00772 1.00514 1.19120 1.12174 1.03181 1.13636 0.87698 1.25503 0.96056 0.97555 0.94818 1.69647 1.37549 1.26930 1.14690 0.86833 0.80452 0.81522 0.80671 1.19727 1.21016 1.18318 1.21230 0.95868 0.96966 0.98461 1.20617 0.92302 0.96739 0.96103 0.91743 0.92405 0.91388 0.90276 0.89780 0.90061 0.88936 0.91938 0.92050 0.91373 0.84502 0.82641 0.93038 0.91932 0.91994 0.91047 0.85010 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.12 1.08 6.07 -4.04 -0.02 1.06 16 3 N -1.00 -10.63 2.78 -114.38 -0.32 -10.95 16 4 C 0.11 0.96 6.40 -4.04 -0.03 0.94 16 5 C -0.18 -1.52 10.24 37.16 0.38 -1.14 16 6 S 2.69 38.50 5.64 -107.50 -0.61 37.89 16 7 O -0.95 -15.82 16.23 -57.17 -0.93 -16.74 16 8 O -0.96 -15.34 15.82 -57.17 -0.90 -16.24 16 9 C -0.67 -10.64 5.98 -39.48 -0.24 -10.87 16 10 C -0.04 -0.64 9.50 -39.64 -0.38 -1.02 16 11 C -0.07 -1.42 8.10 -39.17 -0.32 -1.74 16 12 C -0.03 -0.67 5.29 -104.97 -0.55 -1.22 16 13 C 0.51 11.90 7.28 -12.38 -0.09 11.81 16 14 O -0.59 -14.48 16.61 5.29 0.09 -14.40 16 15 N -0.46 -10.73 2.41 -123.31 -0.30 -11.02 16 16 C 0.07 1.56 8.82 59.85 0.53 2.09 16 17 C -0.35 -8.77 6.61 -15.00 -0.10 -8.87 16 18 H 0.11 2.81 7.47 -52.49 -0.39 2.42 16 19 C 0.07 1.73 5.18 -17.45 -0.09 1.64 16 20 N -0.85 -22.32 13.95 55.50 0.77 -21.55 16 21 Si 0.88 19.26 24.87 -169.99 -4.23 15.04 16 22 H -0.27 -5.74 6.89 56.52 0.39 -5.35 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.26 -5.79 7.03 56.52 0.40 -5.39 16 25 C -0.11 -1.87 9.66 -39.17 -0.38 -2.25 16 26 C -0.04 -0.60 8.40 -39.64 -0.33 -0.93 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.08 0.80 7.61 -51.93 -0.40 0.40 16 32 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 33 H 0.09 0.83 6.91 -51.93 -0.36 0.48 16 34 H 0.06 0.62 7.00 -51.93 -0.36 0.26 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.14 2.10 7.60 -52.49 -0.40 1.70 16 38 H 0.16 3.28 6.26 -52.49 -0.33 2.95 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.29 4.25 -51.93 -0.22 1.07 16 41 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 42 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 44 H 0.14 1.76 7.60 -52.49 -0.40 1.36 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -31.27 370.79 -8.27 -39.54 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.20 Total: 4.41 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.24 Total: -11.56 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.16 Total: -43.52 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -1.74 Total: -47.38 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.23 Total: 15.04 kcal Atomic # 16 Polarization: 38.50 SS G_CDS: -0.61 Total: 37.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.27 -8.27 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057654033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.345 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds