Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47527 * 2 1 4 4 C 1.37102 * 119.99938 * 269.45048 * 3 2 1 5 5 H 1.08005 * 119.99468 * 187.30935 * 4 3 2 6 6 C 1.38945 * 120.00054 * 7.30436 * 4 3 2 7 7 N 1.31416 * 119.99764 * 18.89493 * 6 4 3 8 8 Si 1.86792 * 120.00276 * 198.88722 * 6 4 3 9 9 H 1.48498 * 109.46984 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47190 * 119.99998 * 8 6 4 11 11 H 1.48496 * 109.47340 * 240.00270 * 8 6 4 12 12 C 1.34788 * 120.00189 * 89.44545 * 3 2 1 13 13 O 1.21288 * 119.99626 * 3.18278 * 12 3 2 14 14 C 1.50699 * 119.99924 * 183.18616 * 12 3 2 15 15 H 1.09003 * 109.47095 * 37.66159 * 14 12 3 16 16 C 1.53002 * 109.47099 * 277.66431 * 14 12 3 17 17 N 1.46495 * 109.47161 * 157.66186 * 14 12 3 18 18 S 1.65597 * 120.00307 * 214.99650 * 17 14 12 19 19 O 1.42095 * 106.40253 * 311.46275 * 18 17 14 20 20 O 1.42101 * 106.40258 * 178.54197 * 18 17 14 21 21 C 1.76196 * 107.21595 * 65.00039 * 18 17 14 22 22 C 1.38242 * 119.99856 * 90.00006 * 21 18 17 23 23 C 1.38238 * 120.00029 * 180.02562 * 22 21 18 24 24 C 1.38240 * 119.99707 * 0.25566 * 23 22 21 25 25 C 1.50703 * 119.99629 * 179.72578 * 24 23 22 26 26 C 1.38243 * 119.99996 * 359.46681 * 24 23 22 27 27 C 1.38230 * 119.99647 * 0.55821 * 26 24 23 28 28 H 1.08998 * 109.46562 * 62.30242 * 1 2 3 29 29 H 1.09002 * 109.47355 * 182.30328 * 1 2 3 30 30 H 1.09001 * 109.47191 * 302.30777 * 1 2 3 31 31 H 1.08997 * 109.47444 * 239.99317 * 2 1 3 32 32 H 1.09005 * 109.46720 * 119.99485 * 2 1 3 33 33 H 0.96995 * 120.00167 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47311 * 64.71394 * 16 14 12 35 35 H 1.08993 * 109.46996 * 184.72060 * 16 14 12 36 36 H 1.09005 * 109.46485 * 304.72015 * 16 14 12 37 37 H 0.97007 * 119.99542 * 34.99718 * 17 14 12 38 38 H 1.08000 * 120.00172 * 359.97438 * 22 21 18 39 39 H 1.07992 * 120.00066 * 179.97438 * 23 22 21 40 40 H 1.09007 * 109.46800 * 90.00194 * 25 24 23 41 41 H 1.09002 * 109.47088 * 209.99766 * 25 24 23 42 42 H 1.08997 * 109.47102 * 330.00109 * 25 24 23 43 43 H 1.07992 * 119.99548 * 180.27509 * 26 24 23 44 44 H 1.08000 * 119.99821 * 179.72401 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2577 2.0236 -1.1873 5 1 2.7278 2.9960 -1.1899 6 6 1.8955 1.4238 -2.3871 7 7 1.0138 0.4493 -2.3947 8 14 2.6615 2.0026 -3.9894 9 1 3.6179 3.1040 -3.7113 10 1 3.3812 0.8729 -4.6305 11 1 1.5950 2.4907 -4.9001 12 6 2.2325 2.0203 1.1672 13 8 2.0761 1.4338 2.2173 14 6 2.6659 3.4636 1.1675 15 1 2.1551 3.9965 0.3655 16 6 4.1783 3.5420 0.9493 17 7 2.3258 4.0754 2.4544 18 16 1.8545 5.6616 2.5183 19 8 2.8074 6.3942 1.7605 20 8 1.5659 5.9398 3.8816 21 6 0.3262 5.7869 1.6505 22 6 -0.8681 5.6184 2.3261 23 6 -2.0671 5.7162 1.6452 24 6 -2.0718 5.9773 0.2877 25 6 -3.3788 6.0778 -0.4558 26 6 -0.8777 6.1515 -0.3867 27 6 0.3213 6.0532 0.2941 28 1 -0.3632 0.4777 -0.9099 29 1 -0.3634 -1.0268 0.0413 30 1 -0.3633 0.5493 0.8686 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.7612 0.0303 -3.2322 34 1 4.4223 3.1632 -0.0433 35 1 4.5042 4.5787 1.0329 36 1 4.6857 2.9396 1.7029 37 1 2.3767 3.5513 3.2691 38 1 -0.8643 5.4095 3.3857 39 1 -3.0001 5.5841 2.1729 40 1 -3.7267 7.1107 -0.4409 41 1 -3.2353 5.7575 -1.4878 42 1 -4.1196 5.4379 0.0236 43 1 -0.8815 6.3599 -1.4464 44 1 1.2543 6.1849 -0.2336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -73.557150 kcal Electronic energy + Delta-G solvation = -29026.920207 eV Core-core repulsion = 25071.854953 eV Total energy + Delta-G solvation = -3955.065254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.28324 -38.98663 -37.03111 -35.66673 -35.60077 -34.49721 -33.02952 -31.65295 -31.01742 -30.35748 -28.78318 -27.32310 -25.04085 -23.78260 -22.85513 -21.89357 -21.48774 -19.39022 -19.26920 -18.01719 -17.64770 -17.04184 -15.86129 -15.78100 -15.40503 -15.15569 -14.56783 -14.41026 -14.36464 -14.15041 -13.91350 -13.75479 -13.52190 -13.09624 -12.67345 -12.47811 -12.41305 -12.34139 -12.15254 -12.07543 -11.91770 -11.83374 -11.66314 -11.37980 -11.28623 -11.20773 -11.14743 -10.98265 -10.75118 -10.66994 -10.51140 -10.33940 -9.79756 -9.40400 -9.06093 -8.98783 -8.97660 -8.38915 -7.89851 -6.45569 -4.01222 0.58204 0.91030 1.36316 2.98651 3.13448 3.14539 3.16261 3.52720 3.76866 3.95785 3.98554 4.48551 4.66920 4.72346 4.79325 4.92131 4.92970 5.22992 5.32021 5.41842 5.42943 5.57091 5.62411 5.72675 5.78219 5.89015 5.96083 5.98858 6.13465 6.19023 6.31028 6.44794 6.48165 6.57866 6.65819 6.72043 6.83138 6.88508 6.99169 7.19546 7.34207 7.40936 7.63221 7.78841 8.32216 8.93368 9.39190 9.78747 10.47108 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.005342 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.747046 B = 5240.706352 C = 6258.625960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 N -0.431 5.431 4 C -0.339 4.339 5 H 0.103 0.897 6 C 0.037 3.963 7 N -0.854 5.854 8 Si 0.916 3.084 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.447 3.553 13 O -0.605 6.605 14 C 0.149 3.851 15 H 0.098 0.902 16 C -0.163 4.163 17 N -1.095 6.095 18 S 2.697 3.303 19 O -0.959 6.959 20 O -0.967 6.967 21 C -0.681 4.681 22 C -0.013 4.013 23 C -0.145 4.145 24 C -0.032 4.032 25 C -0.122 4.122 26 C -0.138 4.138 27 C -0.012 4.012 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.020 0.980 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.424 0.576 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.132 0.868 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 8.600 1.062 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 N -0.148 5.148 4 C -0.466 4.466 5 H 0.121 0.879 6 C -0.168 4.168 7 N -0.492 5.492 8 Si 0.742 3.258 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.207 1.207 12 C 0.234 3.766 13 O -0.492 6.492 14 C 0.039 3.961 15 H 0.116 0.884 16 C -0.222 4.222 17 N -0.856 5.856 18 S 2.786 3.214 19 O -0.948 6.948 20 O -0.957 6.957 21 C -0.768 4.768 22 C -0.032 4.032 23 C -0.164 4.164 24 C -0.032 4.032 25 C -0.179 4.179 26 C -0.157 4.157 27 C -0.031 4.031 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.261 0.739 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.324 8.927 1.628 10.051 hybrid contribution -0.437 -0.393 -1.079 1.229 sum -4.760 8.533 0.549 9.787 Atomic orbital electron populations 1.22110 0.96725 0.99181 1.01996 1.21267 0.94492 0.82720 1.00339 1.43820 1.54725 1.11814 1.04468 1.19810 1.39502 1.04459 0.82846 0.87896 1.25225 0.95245 0.96715 0.99565 1.70166 1.27002 1.24802 1.27244 0.86030 0.79296 0.78983 0.81448 1.18981 1.20413 1.20737 1.19841 0.84546 0.88071 0.84182 1.90507 1.59516 1.67790 1.31410 1.20461 0.97146 0.94801 0.83684 0.88416 1.22191 0.93830 1.02799 1.03377 1.55299 1.83171 1.31395 1.15784 1.01710 0.73838 0.72544 0.73263 1.93572 1.58571 1.69813 1.72894 1.93560 1.85659 1.83485 1.33027 1.30933 1.20410 1.18287 1.07206 1.20868 0.91161 0.91440 0.99760 1.21120 0.98198 1.02939 0.94117 1.20246 0.95683 0.93256 0.94031 1.20925 0.93873 1.02544 1.00517 1.21159 0.91866 1.02358 1.00343 1.20952 0.99431 0.90880 0.91816 0.88695 0.94998 0.96109 0.88528 0.94375 0.92104 0.90079 0.91216 0.92122 0.73937 0.84422 0.85289 0.90620 0.90832 0.91037 0.85037 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.68 37.16 0.36 -2.85 16 2 C 0.13 3.18 5.37 -4.04 -0.02 3.16 16 3 N -0.43 -10.23 2.63 -114.81 -0.30 -10.53 16 4 C -0.34 -7.84 8.75 -14.93 -0.13 -7.97 16 5 H 0.10 2.22 5.26 -52.48 -0.28 1.94 16 6 C 0.04 0.85 5.08 -17.47 -0.09 0.77 16 7 N -0.85 -20.08 7.86 55.50 0.44 -19.65 16 8 Si 0.92 17.95 29.59 -169.99 -5.03 12.92 16 9 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 10 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 12 C 0.45 10.25 6.87 -10.98 -0.08 10.18 16 13 O -0.61 -15.16 15.64 5.55 0.09 -15.07 16 14 C 0.15 2.85 2.32 -69.08 -0.16 2.69 16 15 H 0.10 1.81 5.97 -51.93 -0.31 1.50 16 16 C -0.16 -2.81 9.29 37.16 0.35 -2.46 16 17 N -1.09 -18.98 5.40 -5.88 -0.03 -19.01 16 18 S 2.70 44.27 5.65 -107.50 -0.61 43.66 16 19 O -0.96 -16.97 16.50 -57.17 -0.94 -17.91 16 20 O -0.97 -17.24 17.28 -57.17 -0.99 -18.23 16 21 C -0.68 -10.69 5.82 -39.58 -0.23 -10.92 16 22 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 23 C -0.14 -1.88 9.70 -39.58 -0.38 -2.26 16 24 C -0.03 -0.40 5.88 -104.62 -0.62 -1.02 16 25 C -0.12 -1.14 10.01 36.01 0.36 -0.78 16 26 C -0.14 -1.87 9.70 -39.58 -0.38 -2.25 16 27 C -0.01 -0.17 8.90 -39.59 -0.35 -0.53 16 28 H 0.09 2.29 5.94 -51.93 -0.31 1.98 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 2.35 5.95 -51.93 -0.31 2.04 16 32 H 0.04 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.27 6.00 8.31 -40.82 -0.34 5.66 16 34 H 0.08 1.39 6.88 -51.93 -0.36 1.03 16 35 H 0.07 1.11 7.59 -51.93 -0.39 0.71 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.42 7.22 8.10 -34.47 -0.28 6.95 16 38 H 0.14 1.82 7.62 -52.49 -0.40 1.42 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.14 1.95 7.62 -52.49 -0.40 1.55 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -29.86 370.23 -9.48 -39.34 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.93 Total: 13.70 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.75 Total: -14.81 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.10 Total: -49.19 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.84 Total: -51.21 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 44.27 SS G_CDS: -0.61 Total: 43.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.86 -9.48 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.214 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds