Wall clock time and date at job start Sat Apr 11 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47124 * 2 1 4 4 C 1.46499 * 120.00027 * 269.99907 * 3 2 1 5 5 C 1.50693 * 109.46955 * 270.00065 * 4 3 2 6 6 H 1.07998 * 120.00164 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99801 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46942 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47295 * 119.99724 * 9 7 5 12 12 H 1.48494 * 109.47433 * 240.00436 * 9 7 5 13 13 C 1.34780 * 119.99913 * 89.99453 * 3 2 1 14 14 O 1.21583 * 119.99598 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00144 * 0.02562 * 13 3 2 16 16 C 1.39950 * 120.00196 * 184.59197 * 15 13 3 17 17 C 1.38859 * 120.06635 * 324.90521 * 16 15 13 18 18 C 1.38114 * 119.93088 * 180.02562 * 17 16 15 19 19 C 1.38284 * 120.06929 * 0.02723 * 18 17 16 20 20 S 1.76201 * 119.93220 * 179.97438 * 19 18 17 21 21 O 1.42094 * 104.27559 * 206.06636 * 20 19 18 22 22 O 1.42102 * 104.27719 * 333.92920 * 20 19 18 23 23 C 1.81402 * 104.44652 * 89.99602 * 20 19 18 24 24 C 1.53005 * 109.46817 * 180.02562 * 23 20 19 25 25 C 1.38278 * 120.13856 * 0.22752 * 19 18 17 26 26 C 1.38122 * 120.06751 * 359.49159 * 25 19 18 27 27 H 1.09003 * 109.47388 * 300.00287 * 1 2 3 28 28 H 1.09001 * 109.47074 * 59.99775 * 1 2 3 29 29 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47079 * 240.00136 * 2 1 3 31 31 H 1.08994 * 109.47160 * 119.99832 * 2 1 3 32 32 H 1.09001 * 109.47035 * 30.00223 * 4 3 2 33 33 H 1.09006 * 109.46871 * 149.99863 * 4 3 2 34 34 H 0.97009 * 119.99614 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99978 * 4.58118 * 15 13 3 36 36 H 1.08004 * 120.03835 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.96680 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47407 * 299.99716 * 23 20 19 39 39 H 1.08995 * 109.47210 * 60.00191 * 23 20 19 40 40 H 1.08994 * 109.47074 * 299.99724 * 24 23 20 41 41 H 1.08995 * 109.47206 * 60.00028 * 24 23 20 42 42 H 1.08997 * 109.46697 * 179.97438 * 24 23 20 43 43 H 1.08000 * 119.96577 * 179.72556 * 25 19 18 44 44 H 1.08004 * 120.03142 * 180.25195 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9135 2.0967 -3.4168 10 1 6.6011 1.2415 -2.4163 11 1 5.9215 1.4171 -4.7372 12 1 6.6204 3.3981 -3.5256 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1628 1.1672 15 7 2.0186 1.3812 2.3344 16 6 2.1591 2.0701 3.5445 17 6 3.1403 3.0431 3.6812 18 6 3.2768 3.7209 4.8768 19 6 2.4381 3.4309 5.9374 20 16 2.6159 4.2973 7.4613 21 8 2.1036 3.3997 8.4365 22 8 3.9789 4.6987 7.4792 23 6 1.5296 5.7401 7.2911 24 6 1.5977 6.5829 8.5662 25 6 1.4635 2.4587 5.8061 26 6 1.3182 1.7815 4.6111 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6752 3.5162 -4.4440 35 1 1.7597 0.4463 2.3358 36 1 3.7965 3.2692 2.8537 37 1 4.0399 4.4775 4.9839 38 1 1.8539 6.3408 6.4413 39 1 0.5047 5.4062 7.1300 40 1 1.2737 5.9825 9.4163 41 1 2.6227 6.9168 8.7268 42 1 0.9453 7.4501 8.4637 43 1 0.8129 2.2314 6.6376 44 1 0.5541 1.0252 4.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078474849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:54 Heat of formation + Delta-G solvation = -65.329669 kcal Electronic energy + Delta-G solvation = -27156.376493 eV Core-core repulsion = 23201.668010 eV Total energy + Delta-G solvation = -3954.708484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50562 -38.67025 -37.21866 -36.07311 -35.63548 -34.67432 -33.48637 -32.80000 -31.07030 -30.29991 -29.89727 -27.02709 -24.50606 -23.65292 -23.19947 -23.02190 -22.08249 -19.54973 -19.10702 -18.27496 -17.78084 -17.03875 -16.52709 -16.42593 -16.23090 -15.37344 -15.16170 -14.68977 -14.49628 -14.40164 -14.17480 -13.92150 -13.70052 -13.51398 -13.42845 -13.11754 -12.91358 -12.81737 -12.54754 -12.21061 -12.17000 -12.11146 -11.91337 -11.87897 -11.46796 -11.30690 -11.10857 -11.01188 -10.89144 -10.68942 -10.62347 -10.41261 -10.19233 -9.73488 -9.43742 -9.02979 -8.50941 -8.39866 -7.79721 -6.11660 -4.16639 -0.09417 0.81096 1.31393 2.75633 2.94538 3.25503 3.28703 3.33767 3.37736 3.68336 3.86627 3.94179 4.20242 4.29400 4.41040 4.46230 4.75188 4.82259 4.83691 5.11141 5.18199 5.22838 5.23610 5.34864 5.38556 5.44482 5.52165 5.54174 5.54696 5.79820 5.86556 5.89346 6.06890 6.14689 6.26426 6.34096 6.51078 6.66779 6.99810 7.22468 7.36558 7.51260 7.85267 8.13935 8.38755 8.83065 9.04119 9.49003 10.96311 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.002566 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.852173 B =10907.640875 C =11865.764828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.603 5.603 4 C 0.260 3.740 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.697 3.303 14 O -0.564 6.564 15 N -0.697 5.697 16 C 0.238 3.762 17 C -0.143 4.143 18 C -0.004 4.004 19 C -0.691 4.691 20 S 2.502 3.498 21 O -0.943 6.943 22 O -0.939 6.939 23 C -0.611 4.611 24 C -0.150 4.150 25 C -0.005 4.005 26 C -0.179 4.179 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.156 0.844 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.141 0.859 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -1.042 19.928 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.399 3.601 14 O -0.440 6.440 15 N -0.345 5.345 16 C 0.140 3.860 17 C -0.165 4.165 18 C -0.024 4.024 19 C -0.780 4.780 20 S 2.683 3.317 21 O -0.940 6.940 22 O -0.937 6.937 23 C -0.741 4.741 24 C -0.208 4.208 25 C -0.025 4.025 26 C -0.201 4.201 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.243 0.757 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.159 0.841 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.553 -0.361 20.246 21.612 hybrid contribution 0.239 -0.621 -1.424 1.572 sum -7.314 -0.982 18.822 20.217 Atomic orbital electron populations 1.22247 0.96492 1.01612 1.02595 1.21406 0.93708 0.84173 1.02591 1.47672 1.66545 1.13342 1.06178 1.19280 0.96412 0.93508 0.76735 1.21462 0.96872 1.32086 1.06301 0.92407 1.24928 0.97930 0.94843 0.96344 1.69938 1.35648 1.33337 1.14347 0.86433 0.84498 0.78112 0.78310 1.19819 1.20948 1.20811 1.15949 0.79262 0.84836 0.80044 1.90900 1.50974 1.16694 1.85386 1.43228 1.72988 1.14484 1.03839 1.17920 0.91618 0.91870 0.84638 1.21618 0.98494 0.97773 0.98586 1.20833 0.94769 0.96263 0.90548 1.30222 1.09922 1.16456 1.21392 1.05188 0.75801 0.76255 0.74492 1.93547 1.81519 1.61319 1.57650 1.93567 1.30302 1.83549 1.86258 1.30227 1.17160 1.18842 1.07823 1.21555 1.04249 1.00820 0.94161 1.20602 0.93905 0.91378 0.96595 1.20969 1.00774 1.04654 0.93697 0.93112 0.91705 0.91945 0.89264 0.92459 0.94644 0.93665 0.92687 0.75677 0.82697 0.84060 0.84502 0.84691 0.90881 0.90795 0.89858 0.84141 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.60 -12.01 2.46 -180.81 -0.44 -12.45 16 4 C 0.26 6.48 5.16 -5.20 -0.03 6.46 16 5 C -0.53 -14.47 9.39 -34.44 -0.32 -14.80 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.70 13.93 8.12 -86.92 -0.71 13.23 16 14 O -0.56 -13.52 13.36 5.29 0.07 -13.45 16 15 N -0.70 -10.49 5.22 -14.23 -0.07 -10.56 16 16 C 0.24 3.49 6.30 -83.69 -0.53 2.96 16 17 C -0.14 -2.28 8.69 -39.40 -0.34 -2.62 16 18 C 0.00 -0.06 9.46 -39.61 -0.37 -0.43 16 19 C -0.69 -8.07 5.66 -39.55 -0.22 -8.29 16 20 S 2.50 25.18 5.16 -107.50 -0.55 24.62 16 21 O -0.94 -11.58 17.11 -57.54 -0.98 -12.56 16 22 O -0.94 -12.35 17.12 -57.54 -0.98 -13.33 16 23 C -0.61 -3.94 6.70 37.16 0.25 -3.69 16 24 C -0.15 -0.87 9.92 37.16 0.37 -0.50 16 25 C -0.01 -0.06 9.46 -39.61 -0.37 -0.43 16 26 C -0.18 -2.07 9.97 -39.39 -0.39 -2.47 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.67 6.30 -51.93 -0.33 0.34 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.41 4.75 6.52 -40.82 -0.27 4.48 16 36 H 0.16 2.85 6.22 -52.48 -0.33 2.53 16 37 H 0.14 1.67 7.56 -52.49 -0.40 1.27 16 38 H 0.14 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.14 1.18 7.56 -52.49 -0.40 0.79 16 44 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -36.56 382.06 -10.20 -46.76 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.29 Total: 3.08 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.42 Total: -9.14 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.22 Total: -48.17 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.90 Total: -39.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 25.18 SS G_CDS: -0.55 Total: 24.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.56 -10.20 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078474849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.574 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds