Wall clock time and date at job start Sat Apr 11 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47124 * 2 1 4 4 C 1.46499 * 120.00027 * 269.99907 * 3 2 1 5 5 C 1.50693 * 109.46955 * 270.00065 * 4 3 2 6 6 H 1.07998 * 120.00164 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99801 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46942 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47295 * 119.99724 * 9 7 5 12 12 H 1.48494 * 109.47433 * 240.00436 * 9 7 5 13 13 C 1.34780 * 119.99913 * 89.99453 * 3 2 1 14 14 O 1.21583 * 119.99598 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00144 * 0.02562 * 13 3 2 16 16 C 1.39950 * 120.00196 * 184.59197 * 15 13 3 17 17 C 1.38859 * 120.06635 * 324.90521 * 16 15 13 18 18 C 1.38114 * 119.93088 * 180.02562 * 17 16 15 19 19 C 1.38284 * 120.06929 * 0.02723 * 18 17 16 20 20 S 1.76201 * 119.93220 * 179.97438 * 19 18 17 21 21 O 1.42094 * 104.27559 * 206.06636 * 20 19 18 22 22 O 1.42102 * 104.27719 * 333.92920 * 20 19 18 23 23 C 1.81402 * 104.44652 * 89.99602 * 20 19 18 24 24 C 1.53005 * 109.46817 * 180.02562 * 23 20 19 25 25 C 1.38278 * 120.13856 * 0.22752 * 19 18 17 26 26 C 1.38122 * 120.06751 * 359.49159 * 25 19 18 27 27 H 1.09003 * 109.47388 * 300.00287 * 1 2 3 28 28 H 1.09001 * 109.47074 * 59.99775 * 1 2 3 29 29 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47079 * 240.00136 * 2 1 3 31 31 H 1.08994 * 109.47160 * 119.99832 * 2 1 3 32 32 H 1.09001 * 109.47035 * 30.00223 * 4 3 2 33 33 H 1.09006 * 109.46871 * 149.99863 * 4 3 2 34 34 H 0.97009 * 119.99614 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99978 * 4.58118 * 15 13 3 36 36 H 1.08004 * 120.03835 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.96680 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47407 * 299.99716 * 23 20 19 39 39 H 1.08995 * 109.47210 * 60.00191 * 23 20 19 40 40 H 1.08994 * 109.47074 * 299.99724 * 24 23 20 41 41 H 1.08995 * 109.47206 * 60.00028 * 24 23 20 42 42 H 1.08997 * 109.46697 * 179.97438 * 24 23 20 43 43 H 1.08000 * 119.96577 * 179.72556 * 25 19 18 44 44 H 1.08004 * 120.03142 * 180.25195 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9135 2.0967 -3.4168 10 1 6.6011 1.2415 -2.4163 11 1 5.9215 1.4171 -4.7372 12 1 6.6204 3.3981 -3.5256 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1628 1.1672 15 7 2.0186 1.3812 2.3344 16 6 2.1591 2.0701 3.5445 17 6 3.1403 3.0431 3.6812 18 6 3.2768 3.7209 4.8768 19 6 2.4381 3.4309 5.9374 20 16 2.6159 4.2973 7.4613 21 8 2.1036 3.3997 8.4365 22 8 3.9789 4.6987 7.4792 23 6 1.5296 5.7401 7.2911 24 6 1.5977 6.5829 8.5662 25 6 1.4635 2.4587 5.8061 26 6 1.3182 1.7815 4.6111 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6752 3.5162 -4.4440 35 1 1.7597 0.4463 2.3358 36 1 3.7965 3.2692 2.8537 37 1 4.0399 4.4775 4.9839 38 1 1.8539 6.3408 6.4413 39 1 0.5047 5.4062 7.1300 40 1 1.2737 5.9825 9.4163 41 1 2.6227 6.9168 8.7268 42 1 0.9453 7.4501 8.4637 43 1 0.8129 2.2314 6.6376 44 1 0.5541 1.0252 4.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078474849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:53 Heat of formation + Delta-G solvation = -91.253670 kcal Electronic energy + Delta-G solvation = -27157.500642 eV Core-core repulsion = 23201.668010 eV Total energy + Delta-G solvation = -3955.832633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85470 -39.87603 -38.11465 -37.17345 -36.95648 -36.05342 -34.80222 -33.98524 -32.08008 -31.67473 -31.11519 -28.83643 -25.52901 -24.87159 -24.47741 -24.06758 -23.36704 -20.95110 -19.96191 -19.51858 -18.85788 -18.55552 -18.30510 -17.22738 -17.12145 -16.90406 -16.54738 -16.09898 -15.63568 -15.50600 -15.30083 -15.09665 -14.74211 -14.59991 -14.36542 -14.27008 -14.13699 -13.85475 -13.68502 -13.34420 -13.31386 -13.13454 -13.10585 -13.02447 -12.74757 -12.55869 -12.52299 -12.34526 -12.24099 -12.06804 -11.91738 -11.75865 -11.65630 -11.33507 -10.99565 -10.66276 -10.06035 -9.74538 -9.30461 -8.24311 -6.38574 -0.86755 -0.22057 0.30425 1.34888 1.37444 1.47897 1.58588 1.93014 2.02456 2.35814 2.51847 2.89901 3.00542 3.06098 3.19936 3.75678 3.77705 3.89369 3.96694 4.00831 4.27148 4.31872 4.36217 4.44183 4.48749 4.50126 4.76550 4.78856 4.85591 4.90862 4.91960 4.95322 4.99278 5.10228 5.16269 5.16989 5.24359 5.34278 5.39819 5.53384 5.74540 5.88541 5.98978 6.03565 6.70211 6.94710 7.28036 7.52429 8.82548 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.002566 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.852173 B =10907.640875 C =11865.764828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.278 3.722 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.694 3.306 14 O -0.615 6.615 15 N -0.676 5.676 16 C 0.211 3.789 17 C -0.171 4.171 18 C -0.014 4.014 19 C -0.687 4.687 20 S 2.508 3.492 21 O -0.965 6.965 22 O -0.978 6.978 23 C -0.587 4.587 24 C -0.163 4.163 25 C -0.004 4.004 26 C -0.163 4.163 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.423 0.577 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.175 0.825 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 -2.274 22.058 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.157 3.843 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.396 3.604 14 O -0.494 6.494 15 N -0.327 5.327 16 C 0.114 3.886 17 C -0.193 4.193 18 C -0.034 4.034 19 C -0.774 4.774 20 S 2.692 3.308 21 O -0.962 6.962 22 O -0.975 6.975 23 C -0.720 4.720 24 C -0.222 4.222 25 C -0.023 4.023 26 C -0.184 4.184 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.264 0.736 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.181 0.819 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.192 0.808 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.123 -1.704 22.408 24.254 hybrid contribution 0.660 -0.158 -1.934 2.050 sum -8.463 -1.862 20.474 22.232 Atomic orbital electron populations 1.22167 0.94173 1.03739 1.01857 1.21751 0.95586 0.81195 1.03912 1.47525 1.66946 1.15219 1.04669 1.18681 0.95302 0.91446 0.78920 1.21719 0.97910 1.31977 1.06408 0.93093 1.25795 1.02151 0.94504 0.96451 1.70045 1.37587 1.34147 1.14835 0.85405 0.79262 0.77959 0.78385 1.19413 1.19349 1.20839 1.16110 0.78821 0.84375 0.81129 1.90869 1.53059 1.19148 1.86343 1.42794 1.72364 1.15055 1.02472 1.18143 0.92728 0.92516 0.85202 1.21448 0.99474 0.99794 0.98581 1.20882 0.95622 0.96460 0.90415 1.30551 1.09075 1.16609 1.21159 1.05057 0.75583 0.76924 0.73278 1.93512 1.81667 1.63143 1.57886 1.93520 1.33489 1.84110 1.86390 1.30056 1.16973 1.15991 1.09010 1.21762 1.04912 1.01600 0.93893 1.21100 0.93677 0.90269 0.97288 1.21322 1.00120 1.04600 0.92381 0.92356 0.93950 0.88261 0.90133 0.88955 0.95245 0.98189 0.92364 0.73595 0.86518 0.83658 0.83100 0.81876 0.90146 0.90914 0.87690 0.80760 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.86 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.61 -24.99 2.46 -844.22 -2.07 -27.07 16 4 C 0.28 14.63 5.16 85.63 0.44 15.07 16 5 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 9 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.69 28.73 8.12 179.05 1.45 30.19 16 14 O -0.61 -31.56 13.36 -3.98 -0.05 -31.61 16 15 N -0.68 -20.07 5.22 -317.19 -1.65 -21.72 16 16 C 0.21 6.10 6.30 38.14 0.24 6.35 16 17 C -0.17 -5.73 8.69 22.39 0.19 -5.54 16 18 C -0.01 -0.39 9.46 22.25 0.21 -0.18 16 19 C -0.69 -15.08 5.66 22.29 0.13 -14.96 16 20 S 2.51 46.42 5.16 -56.49 -0.29 46.13 16 21 O -0.96 -21.64 17.11 -127.65 -2.18 -23.83 16 22 O -0.98 -25.51 17.12 -127.65 -2.19 -27.70 16 23 C -0.59 -5.68 6.70 71.98 0.48 -5.20 16 24 C -0.16 -1.40 9.92 71.98 0.71 -0.68 16 25 C 0.00 -0.08 9.46 22.25 0.21 0.13 16 26 C -0.16 -3.31 9.97 22.39 0.22 -3.08 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.09 1.93 6.30 -2.39 -0.02 1.92 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.00 0.00 7.42 -2.38 -0.02 -0.02 16 34 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 35 H 0.42 9.01 6.52 -92.70 -0.60 8.40 16 36 H 0.12 4.78 6.22 -2.91 -0.02 4.76 16 37 H 0.15 3.68 7.56 -2.91 -0.02 3.65 16 38 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.18 2.13 7.56 -2.91 -0.02 2.11 16 44 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -85.07 382.06 0.53 -84.54 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.41 Total: 16.43 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 6.25 Total: -6.96 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.44 Total: -103.79 kcal Atomic # 8 Polarization: -78.72 SS G_CDS: -4.42 Total: -83.14 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 46.42 SS G_CDS: -0.29 Total: 46.13 kcal Total: -85.07 0.53 -84.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078474849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.714 kcal (2) G-P(sol) polarization free energy of solvation -85.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds