Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47112 * 2 1 4 4 C 1.46499 * 120.00078 * 280.68465 * 3 2 1 5 5 C 1.53008 * 109.46882 * 269.72297 * 4 3 2 6 6 C 1.34784 * 119.99898 * 100.40470 * 3 2 1 7 7 O 1.21547 * 119.99795 * 177.13581 * 6 3 2 8 8 C 1.47845 * 119.99862 * 357.13555 * 6 3 2 9 9 C 1.39570 * 120.14415 * 322.13622 * 8 6 3 10 10 C 1.37961 * 119.85351 * 179.79470 * 9 8 6 11 11 C 1.38361 * 120.14277 * 0.48317 * 10 9 8 12 12 S 1.76200 * 119.85508 * 179.76826 * 11 10 9 13 13 O 1.42099 * 106.39944 * 23.52208 * 12 11 10 14 14 O 1.42096 * 106.40220 * 156.43932 * 12 11 10 15 15 N 1.65598 * 107.21823 * 269.97995 * 12 11 10 16 16 C 1.46504 * 120.00015 * 64.99776 * 15 12 11 17 17 C 1.50698 * 109.46924 * 165.00238 * 16 15 12 18 18 H 1.07998 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37888 * 119.99852 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99685 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47348 * 59.99830 * 21 19 17 23 23 H 1.48501 * 109.46543 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47072 * 299.99484 * 21 19 17 25 25 C 1.38368 * 120.29042 * 359.74810 * 11 10 9 26 26 C 1.37956 * 120.14697 * 0.02562 * 25 11 10 27 27 H 1.09004 * 109.46829 * 80.75440 * 1 2 3 28 28 H 1.09002 * 109.46933 * 200.74796 * 1 2 3 29 29 H 1.08999 * 109.47249 * 320.74819 * 1 2 3 30 30 H 1.09004 * 109.47138 * 239.99835 * 2 1 3 31 31 H 1.09002 * 109.47053 * 120.00264 * 2 1 3 32 32 H 1.08991 * 109.47368 * 29.72056 * 4 3 2 33 33 H 1.08999 * 109.47190 * 149.72923 * 4 3 2 34 34 H 1.08998 * 109.46877 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46951 * 299.99977 * 5 4 3 36 36 H 1.08995 * 109.46982 * 59.99907 * 5 4 3 37 37 H 1.07999 * 120.07666 * 359.97438 * 9 8 6 38 38 H 1.07996 * 119.92759 * 180.23469 * 10 9 8 39 39 H 0.97000 * 120.00420 * 245.00222 * 15 12 11 40 40 H 1.09003 * 109.46901 * 285.00036 * 16 15 12 41 41 H 1.09003 * 109.47000 * 44.99801 * 16 15 12 42 42 H 0.97001 * 119.99559 * 180.02562 * 20 19 17 43 43 H 1.07996 * 119.92368 * 180.02562 * 25 11 10 44 44 H 1.07999 * 120.07650 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0407 2.1502 -1.2467 5 6 3.3876 1.9508 -1.9447 6 6 2.4417 1.9462 1.1481 7 8 2.8954 3.0738 1.1392 8 6 2.3543 1.1945 2.4181 9 6 1.2561 0.3710 2.6710 10 6 1.1827 -0.3310 3.8564 11 6 2.1898 -0.2124 4.7977 12 16 2.0854 -1.1078 6.3116 13 8 1.2331 -2.2174 6.0634 14 8 3.4162 -1.2419 6.7911 15 7 1.2919 -0.1425 7.3983 16 6 -0.1098 0.2179 7.1709 17 6 -0.6985 0.7722 8.4426 18 1 -0.0897 0.8480 9.3314 19 6 -2.0149 1.1815 8.4717 20 7 -2.7564 1.0887 7.3896 21 14 -2.7449 1.8679 10.0482 22 1 -1.9846 3.0748 10.4614 23 1 -4.1656 2.2333 9.8177 24 1 -2.6646 0.8418 11.1187 25 6 3.2789 0.6060 4.5552 26 6 3.3667 1.3099 3.3720 27 1 -0.3633 0.1651 -1.0144 28 1 -0.3633 -0.9610 0.3641 29 1 -0.3634 0.7958 0.6502 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2387 1.8067 -1.8999 33 1 1.9001 3.2078 -1.0238 34 1 3.4045 2.5234 -2.8721 35 1 4.1897 2.2943 -1.2914 36 1 3.5283 0.8932 -2.1676 37 1 0.4670 0.2813 1.9392 38 1 0.3354 -0.9715 4.0517 39 1 1.7551 0.1844 8.1853 40 1 -0.1685 0.9709 6.3850 41 1 -0.6681 -0.6679 6.8679 42 1 -3.6824 1.3770 7.4100 43 1 4.0618 0.6939 5.2939 44 1 4.2171 1.9487 3.1841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078944771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -75.084004 kcal Electronic energy + Delta-G solvation = -27607.087547 eV Core-core repulsion = 23651.956083 eV Total energy + Delta-G solvation = -3955.131463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79506 -38.50475 -36.80185 -36.61634 -35.41498 -34.67731 -33.06647 -32.19230 -31.39404 -30.85311 -29.82250 -26.78210 -24.98557 -23.96154 -23.10013 -22.59641 -22.44927 -19.62296 -19.19515 -17.93213 -17.62463 -17.27305 -16.81757 -15.96757 -15.74588 -15.51043 -15.30323 -14.99828 -14.70039 -14.44826 -14.04076 -13.95704 -13.57330 -13.40797 -13.16408 -13.00917 -12.88300 -12.83587 -12.57514 -12.35633 -12.15363 -12.04264 -11.86162 -11.67021 -11.60111 -11.52128 -11.32759 -11.16402 -10.95347 -10.82109 -10.70542 -10.17282 -10.09289 -9.49350 -9.36954 -9.09630 -9.03451 -8.94115 -8.28087 -6.21153 -4.25694 0.38959 0.92842 1.24711 2.44477 2.62279 3.25531 3.29994 3.31751 3.39440 3.69075 4.12577 4.19083 4.32275 4.44045 4.58315 4.72283 4.75176 4.81983 4.91631 5.00089 5.01438 5.09378 5.16204 5.21412 5.29789 5.39828 5.45971 5.49832 5.52056 5.59481 5.79722 5.87356 5.88627 5.96396 6.06457 6.10417 6.24019 6.37545 6.69502 7.01033 7.23046 7.28487 7.73895 7.76589 7.85331 8.13123 8.77885 9.39402 10.89204 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003147 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.436075 B = 8896.306879 C = 9904.486013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 N -0.608 5.608 4 C 0.111 3.889 5 C -0.167 4.167 6 C 0.559 3.441 7 O -0.528 6.528 8 C -0.086 4.086 9 C -0.129 4.129 10 C -0.019 4.019 11 C -0.649 4.649 12 S 2.689 3.311 13 O -0.959 6.959 14 O -0.977 6.977 15 N -1.101 6.101 16 C 0.245 3.755 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.025 4.025 26 C -0.091 4.091 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.412 0.588 40 H 0.022 0.978 41 H 0.040 0.960 42 H 0.266 0.734 43 H 0.146 0.854 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -1.698 -17.502 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.033 4.033 3 N -0.341 5.341 4 C -0.011 4.011 5 C -0.226 4.226 6 C 0.348 3.652 7 O -0.405 6.405 8 C -0.090 4.090 9 C -0.147 4.147 10 C -0.039 4.039 11 C -0.733 4.733 12 S 2.776 3.224 13 O -0.949 6.949 14 O -0.967 6.967 15 N -0.864 5.864 16 C 0.122 3.878 17 C -0.570 4.570 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.044 4.044 26 C -0.111 4.111 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.247 0.753 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.164 0.836 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.990 -1.948 -17.661 19.913 hybrid contribution -0.533 1.192 0.555 1.419 sum 8.457 -0.756 -17.106 19.097 Atomic orbital electron populations 1.22415 0.95389 1.03433 1.02886 1.21958 0.94859 0.82206 1.04250 1.47963 1.63874 1.14284 1.07955 1.21441 0.97885 0.97406 0.84349 1.22123 0.97895 1.01890 1.00660 1.18461 0.77330 0.85970 0.83472 1.90789 1.44643 1.18618 1.86404 1.20114 0.96711 0.97490 0.94648 1.22109 0.98213 0.95762 0.98663 1.21001 0.96172 0.95257 0.91422 1.31499 1.02614 1.16106 1.23112 1.01975 0.72870 0.74203 0.73359 1.93572 1.67447 1.48352 1.85509 1.93534 1.37263 1.86218 1.79692 1.55441 1.23827 1.71169 1.35924 1.19112 0.74145 0.96218 0.98289 1.21147 0.96516 1.42956 0.96429 0.91602 1.24964 0.96787 0.95473 0.96904 1.69917 1.08319 1.46764 1.27814 0.86465 0.78036 0.79450 0.82936 1.20072 1.21111 1.19985 1.20889 0.95507 0.91449 0.96584 1.21245 0.98559 0.98508 0.92780 0.91791 0.90448 0.91155 0.90225 0.88766 0.90305 0.89747 0.91510 0.92107 0.92571 0.83051 0.83260 0.75348 0.95996 0.94258 0.92385 0.83629 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.59 37.16 0.32 -0.93 16 2 C 0.09 0.68 5.57 -4.04 -0.02 0.66 16 3 N -0.61 -6.07 2.48 -174.80 -0.43 -6.50 16 4 C 0.11 0.92 6.09 -4.04 -0.02 0.90 16 5 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 6 C 0.56 7.51 7.35 -12.33 -0.09 7.42 16 7 O -0.53 -8.68 16.49 5.32 0.09 -8.59 16 8 C -0.09 -1.18 5.15 -104.97 -0.54 -1.72 16 9 C -0.13 -1.67 7.45 -39.19 -0.29 -1.96 16 10 C -0.02 -0.29 9.50 -39.64 -0.38 -0.67 16 11 C -0.65 -10.25 5.95 -39.49 -0.24 -10.48 16 12 S 2.69 47.83 5.73 -107.50 -0.62 47.21 16 13 O -0.96 -19.48 16.74 -57.17 -0.96 -20.44 16 14 O -0.98 -18.09 17.27 -57.17 -0.99 -19.08 16 15 N -1.10 -21.50 5.99 -11.65 -0.07 -21.57 16 16 C 0.25 5.87 5.98 -5.19 -0.03 5.84 16 17 C -0.53 -13.95 9.27 -34.44 -0.32 -14.27 16 18 H 0.07 1.65 7.65 -52.49 -0.40 1.25 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 21 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.03 -0.36 9.50 -39.64 -0.38 -0.74 16 26 C -0.09 -1.25 9.62 -39.19 -0.38 -1.63 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.79 5.20 -51.93 -0.27 0.52 16 32 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.08 0.82 7.47 -51.93 -0.39 0.44 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.15 1.60 3.25 -52.49 -0.17 1.43 16 38 H 0.15 2.15 7.60 -52.49 -0.40 1.75 16 39 H 0.41 7.34 8.54 -34.47 -0.29 7.04 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 1.01 7.75 -51.93 -0.40 0.60 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.15 1.83 7.60 -52.49 -0.40 1.43 16 44 H 0.14 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -33.75 377.77 -9.66 -43.41 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.01 Total: 5.33 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.08 Total: -16.86 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.23 Total: -52.22 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.86 Total: -48.11 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 47.83 SS G_CDS: -0.62 Total: 47.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.75 -9.66 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078944771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.669 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds