Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47112 * 2 1 4 4 C 1.46499 * 120.00078 * 280.68465 * 3 2 1 5 5 C 1.53008 * 109.46882 * 269.72297 * 4 3 2 6 6 C 1.34784 * 119.99898 * 100.40470 * 3 2 1 7 7 O 1.21547 * 119.99795 * 177.13581 * 6 3 2 8 8 C 1.47845 * 119.99862 * 357.13555 * 6 3 2 9 9 C 1.39570 * 120.14415 * 322.13622 * 8 6 3 10 10 C 1.37961 * 119.85351 * 179.79470 * 9 8 6 11 11 C 1.38361 * 120.14277 * 0.48317 * 10 9 8 12 12 S 1.76200 * 119.85508 * 179.76826 * 11 10 9 13 13 O 1.42099 * 106.39944 * 23.52208 * 12 11 10 14 14 O 1.42096 * 106.40220 * 156.43932 * 12 11 10 15 15 N 1.65598 * 107.21823 * 269.97995 * 12 11 10 16 16 C 1.46504 * 120.00015 * 64.99776 * 15 12 11 17 17 C 1.50698 * 109.46924 * 165.00238 * 16 15 12 18 18 H 1.07998 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37888 * 119.99852 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99685 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47348 * 59.99830 * 21 19 17 23 23 H 1.48501 * 109.46543 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47072 * 299.99484 * 21 19 17 25 25 C 1.38368 * 120.29042 * 359.74810 * 11 10 9 26 26 C 1.37956 * 120.14697 * 0.02562 * 25 11 10 27 27 H 1.09004 * 109.46829 * 80.75440 * 1 2 3 28 28 H 1.09002 * 109.46933 * 200.74796 * 1 2 3 29 29 H 1.08999 * 109.47249 * 320.74819 * 1 2 3 30 30 H 1.09004 * 109.47138 * 239.99835 * 2 1 3 31 31 H 1.09002 * 109.47053 * 120.00264 * 2 1 3 32 32 H 1.08991 * 109.47368 * 29.72056 * 4 3 2 33 33 H 1.08999 * 109.47190 * 149.72923 * 4 3 2 34 34 H 1.08998 * 109.46877 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46951 * 299.99977 * 5 4 3 36 36 H 1.08995 * 109.46982 * 59.99907 * 5 4 3 37 37 H 1.07999 * 120.07666 * 359.97438 * 9 8 6 38 38 H 1.07996 * 119.92759 * 180.23469 * 10 9 8 39 39 H 0.97000 * 120.00420 * 245.00222 * 15 12 11 40 40 H 1.09003 * 109.46901 * 285.00036 * 16 15 12 41 41 H 1.09003 * 109.47000 * 44.99801 * 16 15 12 42 42 H 0.97001 * 119.99559 * 180.02562 * 20 19 17 43 43 H 1.07996 * 119.92368 * 180.02562 * 25 11 10 44 44 H 1.07999 * 120.07650 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0407 2.1502 -1.2467 5 6 3.3876 1.9508 -1.9447 6 6 2.4417 1.9462 1.1481 7 8 2.8954 3.0738 1.1392 8 6 2.3543 1.1945 2.4181 9 6 1.2561 0.3710 2.6710 10 6 1.1827 -0.3310 3.8564 11 6 2.1898 -0.2124 4.7977 12 16 2.0854 -1.1078 6.3116 13 8 1.2331 -2.2174 6.0634 14 8 3.4162 -1.2419 6.7911 15 7 1.2919 -0.1425 7.3983 16 6 -0.1098 0.2179 7.1709 17 6 -0.6985 0.7722 8.4426 18 1 -0.0897 0.8480 9.3314 19 6 -2.0149 1.1815 8.4717 20 7 -2.7564 1.0887 7.3896 21 14 -2.7449 1.8679 10.0482 22 1 -1.9846 3.0748 10.4614 23 1 -4.1656 2.2333 9.8177 24 1 -2.6646 0.8418 11.1187 25 6 3.2789 0.6060 4.5552 26 6 3.3667 1.3099 3.3720 27 1 -0.3633 0.1651 -1.0144 28 1 -0.3633 -0.9610 0.3641 29 1 -0.3634 0.7958 0.6502 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2387 1.8067 -1.8999 33 1 1.9001 3.2078 -1.0238 34 1 3.4045 2.5234 -2.8721 35 1 4.1897 2.2943 -1.2914 36 1 3.5283 0.8932 -2.1676 37 1 0.4670 0.2813 1.9392 38 1 0.3354 -0.9715 4.0517 39 1 1.7551 0.1844 8.1853 40 1 -0.1685 0.9709 6.3850 41 1 -0.6681 -0.6679 6.8679 42 1 -3.6824 1.3770 7.4100 43 1 4.0618 0.6939 5.2939 44 1 4.2171 1.9487 3.1841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078944771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -98.441847 kcal Electronic energy + Delta-G solvation = -27608.100419 eV Core-core repulsion = 23651.956083 eV Total energy + Delta-G solvation = -3956.144336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78411 -39.58565 -38.32509 -37.51791 -36.95384 -36.47949 -34.13201 -33.85705 -32.47585 -31.83036 -30.58248 -28.72788 -25.97925 -24.60893 -24.52993 -24.08293 -23.47724 -20.71670 -20.45877 -19.35041 -18.93082 -18.49113 -17.81284 -17.68929 -17.19356 -16.66770 -16.45148 -16.29821 -15.86864 -15.58023 -15.21322 -15.04855 -14.69678 -14.64037 -14.30122 -14.18130 -14.09010 -13.98454 -13.69113 -13.58633 -13.48512 -13.22592 -13.13284 -13.00391 -12.73933 -12.71811 -12.56686 -12.32053 -12.18282 -12.07407 -11.98591 -11.89187 -11.43764 -11.19016 -10.83046 -10.52046 -10.18236 -10.11469 -9.87043 -8.24361 -6.35677 -0.80917 -0.49140 0.13190 1.37437 1.45858 1.47593 1.55271 1.78513 2.08419 2.36687 2.43600 2.76297 3.10892 3.20296 3.28130 3.67072 3.72179 3.93464 4.09593 4.11875 4.16074 4.24458 4.36678 4.40227 4.43713 4.52538 4.59874 4.69386 4.77331 4.80140 4.89262 4.90735 4.95323 4.99193 5.03675 5.24049 5.27943 5.31595 5.32606 5.47836 5.58251 5.74997 5.97974 6.13889 6.30720 6.77740 6.88104 7.33630 8.86406 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003147 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.436075 B = 8896.306879 C = 9904.486013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 N -0.598 5.598 4 C 0.106 3.894 5 C -0.162 4.162 6 C 0.554 3.446 7 O -0.567 6.567 8 C -0.089 4.089 9 C -0.119 4.119 10 C -0.034 4.034 11 C -0.658 4.658 12 S 2.708 3.292 13 O -0.987 6.987 14 O -0.982 6.982 15 N -1.102 6.102 16 C 0.258 3.742 17 C -0.551 4.551 18 H 0.074 0.926 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.268 1.268 25 C -0.028 4.028 26 C -0.095 4.095 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.176 0.824 38 H 0.149 0.851 39 H 0.419 0.581 40 H 0.012 0.988 41 H 0.017 0.983 42 H 0.269 0.731 43 H 0.162 0.838 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -1.674 -18.592 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.038 4.038 3 N -0.329 5.329 4 C -0.016 4.016 5 C -0.220 4.220 6 C 0.343 3.657 7 O -0.447 6.447 8 C -0.092 4.092 9 C -0.137 4.137 10 C -0.053 4.053 11 C -0.746 4.746 12 S 2.799 3.201 13 O -0.977 6.977 14 O -0.972 6.972 15 N -0.864 5.864 16 C 0.133 3.867 17 C -0.591 4.591 18 H 0.092 0.908 19 C -0.190 4.190 20 N -0.562 5.562 21 Si 0.794 3.206 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.047 4.047 26 C -0.114 4.114 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.192 0.808 38 H 0.167 0.833 39 H 0.255 0.745 40 H 0.030 0.970 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.180 0.820 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.041 -1.973 -18.731 20.892 hybrid contribution -0.499 1.161 0.736 1.462 sum 8.542 -0.812 -17.995 19.936 Atomic orbital electron populations 1.22408 0.94546 1.03393 1.03720 1.22186 0.95500 0.80798 1.05294 1.48099 1.62109 1.15169 1.07509 1.21649 0.99563 0.96405 0.83934 1.22075 0.96298 1.02904 1.00691 1.18480 0.77498 0.85519 0.84247 1.90768 1.46803 1.20146 1.86971 1.20332 0.96710 0.97176 0.95002 1.22322 0.98488 0.94653 0.98281 1.21138 0.96113 0.95952 0.92124 1.31100 1.04059 1.17339 1.22124 1.01162 0.72078 0.73486 0.73364 1.93530 1.68200 1.50011 1.85968 1.93520 1.37097 1.86321 1.80299 1.55276 1.22514 1.71242 1.37360 1.18698 0.75926 0.94742 0.97287 1.21598 0.97110 1.42874 0.97480 0.90801 1.25842 0.97311 0.95777 1.00075 1.70029 1.08656 1.47727 1.29795 0.85436 0.77197 0.78969 0.79032 1.19206 1.20856 1.19339 1.21100 0.95374 0.90962 0.97265 1.21460 0.99123 0.98346 0.92477 0.89982 0.89372 0.92837 0.87395 0.89586 0.87163 0.91592 0.89746 0.94652 0.91297 0.80759 0.83337 0.74511 0.97028 0.96461 0.92258 0.82037 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.59 71.98 0.62 -1.41 16 2 C 0.08 1.07 5.57 86.38 0.48 1.55 16 3 N -0.60 -10.98 2.48 -825.22 -2.04 -13.02 16 4 C 0.11 1.55 6.09 86.38 0.53 2.08 16 5 C -0.16 -2.09 10.24 71.98 0.74 -1.35 16 6 C 0.55 14.57 7.35 86.79 0.64 15.21 16 7 O -0.57 -18.76 16.49 -3.86 -0.06 -18.83 16 8 C -0.09 -2.37 5.15 -20.09 -0.10 -2.47 16 9 C -0.12 -3.01 7.45 22.53 0.17 -2.85 16 10 C -0.03 -1.01 9.50 22.23 0.21 -0.80 16 11 C -0.66 -20.77 5.95 22.33 0.13 -20.64 16 12 S 2.71 97.05 5.73 -56.49 -0.32 96.73 16 13 O -0.99 -40.84 16.74 -128.00 -2.14 -42.98 16 14 O -0.98 -35.95 17.27 -128.00 -2.21 -38.16 16 15 N -1.10 -43.51 5.99 -190.78 -1.14 -44.65 16 16 C 0.26 12.60 5.98 85.63 0.51 13.11 16 17 C -0.55 -29.08 9.27 25.60 0.24 -28.85 16 18 H 0.07 3.67 7.65 -2.91 -0.02 3.65 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.92 -52.09 13.29 21.45 0.28 -51.81 16 21 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C -0.03 -0.78 9.50 22.23 0.21 -0.57 16 26 C -0.09 -2.53 9.62 22.53 0.22 -2.31 16 27 H 0.08 0.64 8.14 -2.38 -0.02 0.63 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.80 6.73 -2.39 -0.02 0.78 16 30 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 1.27 5.20 -2.39 -0.01 1.26 16 32 H 0.11 0.94 8.07 -2.39 -0.02 0.92 16 33 H 0.07 1.24 7.47 -2.39 -0.02 1.23 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.18 3.49 3.25 -2.91 -0.01 3.48 16 38 H 0.15 4.38 7.60 -2.91 -0.02 4.36 16 39 H 0.42 14.95 8.54 -96.74 -0.83 14.12 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 42 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.16 3.89 7.60 -2.91 -0.02 3.87 16 44 H 0.15 3.57 8.04 -2.91 -0.02 3.55 16 Total: -1.00 -72.47 377.77 -0.36 -72.83 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.21 Total: 24.29 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 5.05 Total: -28.29 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -2.90 Total: -109.48 kcal Atomic # 8 Polarization: -95.55 SS G_CDS: -4.42 Total: -99.97 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 97.05 SS G_CDS: -0.32 Total: 96.73 kcal Total: -72.47 -0.36 -72.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078944771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.614 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds