Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47611 * 2 1 4 4 C 1.52997 * 109.46695 * 239.99760 * 2 1 3 5 5 C 1.50702 * 109.47070 * 65.00098 * 4 2 1 6 6 C 1.34520 * 125.78625 * 90.00256 * 5 4 2 7 7 C 1.41381 * 106.83580 * 180.29744 * 6 5 4 8 8 C 1.34513 * 106.84363 * 359.57150 * 7 6 5 9 9 O 1.34302 * 125.79164 * 270.04068 * 5 4 2 10 10 C 1.50697 * 109.47034 * 120.00500 * 2 1 3 11 11 O 1.21281 * 120.00357 * 119.99731 * 10 2 1 12 12 N 1.34785 * 119.99833 * 299.99314 * 10 2 1 13 13 C 1.46495 * 119.99934 * 180.02562 * 12 10 2 14 14 C 1.53000 * 109.47203 * 180.02562 * 13 12 10 15 15 N 1.46495 * 109.47594 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00532 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99601 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00409 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47056 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99839 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00165 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99759 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00250 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99839 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46924 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47107 * 119.99510 * 24 22 20 27 27 H 1.48499 * 109.46891 * 240.00114 * 24 22 20 28 28 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46769 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.47172 * 59.99767 * 1 2 3 31 31 H 1.08999 * 109.47588 * 305.00276 * 4 2 1 32 32 H 1.09001 * 109.47044 * 185.00277 * 4 2 1 33 33 H 1.08002 * 126.57789 * 0.02807 * 6 5 4 34 34 H 1.08009 * 126.57222 * 179.73218 * 7 6 5 35 35 H 1.07999 * 125.78721 * 180.19275 * 8 7 6 36 36 H 0.96994 * 119.99666 * 0.02562 * 12 10 2 37 37 H 1.09002 * 109.47520 * 299.99799 * 13 12 10 38 38 H 1.08998 * 109.47301 * 60.00076 * 13 12 10 39 39 H 1.09007 * 109.47153 * 300.00436 * 14 13 12 40 40 H 1.08998 * 109.46931 * 59.99848 * 14 13 12 41 41 H 0.97003 * 119.99708 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.46732 * 300.00310 * 18 16 15 43 43 H 1.08998 * 109.46802 * 59.99949 * 18 16 15 44 44 H 0.97001 * 119.99587 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 2.3656 1.0274 -3.0624 7 6 1.6163 1.4854 -4.1704 8 6 0.4833 0.7610 -4.2010 9 8 0.5021 -0.1001 -3.1706 10 6 2.0323 -0.7105 1.2304 11 8 2.7295 -1.6966 1.1191 12 7 1.7068 -0.2500 2.4546 13 6 2.1955 -0.9404 3.6507 14 6 1.6850 -0.2196 4.9000 15 7 2.1742 -0.9095 6.0961 16 6 1.8480 -0.4496 7.3203 17 8 1.1490 0.5352 7.4315 18 6 2.3517 -1.1590 8.5507 19 16 1.7464 -0.3072 10.0285 20 6 2.4651 -1.3179 11.2802 21 1 3.0699 -2.1695 11.0055 22 6 2.2531 -1.0203 12.6192 23 7 1.5155 0.0173 12.9540 24 14 3.0144 -2.0922 13.9462 25 1 3.7921 -3.1871 13.3124 26 1 3.9164 -1.2686 14.7909 27 1 1.9396 -2.6734 14.7901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7198 -1.2952 32 1 3.1262 -0.7996 -1.2056 33 1 3.3318 1.3902 -2.7445 34 1 1.9006 2.2654 -4.8614 35 1 -0.3090 0.8583 -4.9285 36 1 1.1489 0.5384 2.5436 37 1 1.8325 -1.9681 3.6509 38 1 3.2855 -0.9400 3.6505 39 1 2.0476 0.8084 4.9000 40 1 0.5951 -0.2203 4.8999 41 1 2.7330 -1.6974 6.0071 42 1 1.9903 -2.1873 8.5508 43 1 3.4417 -1.1570 8.5506 44 1 1.3677 0.2254 13.8899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720021939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -72.876729 kcal Electronic energy + Delta-G solvation = -25069.819198 eV Core-core repulsion = 21114.783449 eV Total energy + Delta-G solvation = -3955.035749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.99353 -40.37616 -39.22793 -36.21325 -35.45481 -34.02807 -33.34323 -32.44922 -30.88132 -30.02456 -28.01855 -26.91479 -25.51529 -24.33152 -22.67620 -22.12677 -21.07722 -20.50337 -20.14624 -18.11843 -17.89983 -17.31223 -16.75271 -16.40472 -16.29724 -15.87815 -15.67011 -15.53554 -14.94451 -14.82116 -14.51380 -14.23964 -13.90591 -13.80059 -13.49897 -13.22928 -13.20886 -13.07102 -12.70211 -12.59236 -12.53761 -12.34772 -12.09822 -11.81318 -11.70498 -11.56369 -11.08370 -11.04183 -10.77835 -10.36318 -10.21171 -9.83187 -9.52576 -9.51858 -9.10663 -9.02520 -8.87177 -8.26702 -6.52899 -6.23984 -3.94785 1.29743 2.18599 2.21640 2.43564 2.66226 3.00756 3.11090 3.20522 3.28166 3.34182 3.72383 4.08548 4.18263 4.24498 4.33987 4.38525 4.53824 4.62815 4.70761 4.77693 4.81964 5.08108 5.09165 5.11608 5.15922 5.20652 5.27478 5.41493 5.47237 5.54101 5.56588 5.59032 5.64653 5.70866 5.75035 5.85336 5.95304 6.09060 6.10565 6.45977 6.73165 7.01495 7.56996 7.58863 7.77055 8.33464 8.50659 9.21764 10.83529 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.047586 B = 0.001334 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.270392 B =20980.286637 C =21273.366064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.104 0.896 4 C -0.022 4.022 5 C -0.006 4.006 6 C -0.210 4.210 7 C -0.213 4.213 8 C -0.045 4.045 9 O -0.174 6.174 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.725 5.725 13 C 0.108 3.892 14 C 0.111 3.889 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.074 0.926 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.202 0.798 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 0.736 -33.976 33.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 H 0.122 0.878 4 C -0.060 4.060 5 C -0.056 4.056 6 C -0.229 4.229 7 C -0.232 4.232 8 C -0.112 4.112 9 O -0.071 6.071 10 C 0.308 3.692 11 O -0.413 6.413 12 N -0.377 5.377 13 C -0.016 4.016 14 C -0.014 4.014 15 N -0.393 5.393 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.092 0.908 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.218 0.782 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.293 1.568 -33.630 33.691 hybrid contribution 1.410 -1.500 0.544 2.130 sum 0.117 0.068 -33.086 33.086 Atomic orbital electron populations 1.21832 0.92175 1.03269 1.03106 1.21325 0.98295 1.01144 0.92068 0.87761 1.19948 1.02489 0.97874 0.85675 1.22357 0.85941 1.00460 0.96886 1.21643 1.02424 1.00317 0.98543 1.21854 0.95998 1.04044 1.01328 1.24046 1.01263 0.93304 0.92610 1.84044 1.37576 1.51091 1.34342 1.20490 0.79897 0.84478 0.84372 1.90735 1.37691 1.26135 1.86765 1.45794 1.54111 1.32459 1.05379 1.21473 1.00084 0.96835 0.83209 1.21318 0.99947 0.96755 0.83399 1.45808 1.55504 1.32953 1.04998 1.20332 0.79665 0.84296 0.83665 1.90709 1.36399 1.25614 1.86241 1.23531 1.04539 1.03973 0.98368 1.85395 1.67384 1.38685 0.91926 1.22911 1.37123 1.15774 0.92565 0.90819 1.24992 0.95024 0.95566 0.97960 1.70026 1.36284 1.25878 1.18107 0.86114 0.78882 0.79833 0.80652 1.19589 1.20551 1.20556 0.91666 0.91676 0.91110 0.89200 0.87815 0.83461 0.83507 0.78179 0.76055 0.90572 0.90563 0.90939 0.90928 0.76467 0.89051 0.89048 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.90 37.16 0.33 -0.44 16 2 C -0.11 -0.63 2.71 -91.77 -0.25 -0.88 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.02 -0.15 4.57 -27.88 -0.13 -0.28 16 5 C -0.01 -0.05 5.74 -35.62 -0.20 -0.25 16 6 C -0.21 -1.46 10.81 -39.70 -0.43 -1.89 16 7 C -0.21 -1.33 10.91 -39.70 -0.43 -1.76 16 8 C -0.04 -0.26 12.09 29.42 0.36 0.09 16 9 O -0.17 -1.35 10.07 5.71 0.06 -1.30 16 10 C 0.52 4.35 7.15 -10.98 -0.08 4.27 16 11 O -0.54 -6.47 15.92 5.56 0.09 -6.38 16 12 N -0.72 -5.03 5.45 -60.30 -0.33 -5.36 16 13 C 0.11 0.87 5.79 -4.04 -0.02 0.85 16 14 C 0.11 1.09 5.79 -4.04 -0.02 1.07 16 15 N -0.74 -8.99 5.56 -60.29 -0.33 -9.32 16 16 C 0.53 9.50 7.85 -10.98 -0.09 9.41 16 17 O -0.52 -11.23 15.86 5.56 0.09 -11.15 16 18 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 24 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 30 H 0.07 0.40 6.91 -51.93 -0.36 0.04 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.70 7.95 -51.93 -0.41 0.29 16 33 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.20 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.40 1.92 7.89 -40.82 -0.32 1.60 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -37.08 393.33 -8.00 -45.08 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.45 Total: 0.73 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.55 Total: -5.40 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.07 Total: -39.90 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.23 Total: -18.82 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.08 -8.00 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720021939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.798 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds