Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35709 * 116.99647 * 2 1 4 4 C 1.39061 * 119.90020 * 180.02562 * 3 2 1 5 5 C 1.37647 * 120.12983 * 180.02562 * 4 3 2 6 6 C 1.39775 * 119.92007 * 359.97438 * 5 4 3 7 7 C 1.47531 * 120.10027 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00074 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99561 * 359.97424 * 7 6 5 10 10 C 1.46497 * 119.99898 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47223 * 34.99279 * 10 9 7 12 12 C 1.53009 * 109.47079 * 274.99911 * 10 9 7 13 13 C 1.52999 * 109.47387 * 154.99713 * 10 9 7 14 14 C 1.52997 * 109.47302 * 295.00093 * 13 10 9 15 15 C 1.52999 * 109.47302 * 179.97438 * 14 13 10 16 16 N 1.46500 * 109.47175 * 179.97438 * 15 14 13 17 17 C 1.36929 * 119.99775 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00488 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47363 * 89.99805 * 21 19 17 23 23 H 1.48499 * 109.46713 * 209.99692 * 21 19 17 24 24 H 1.48501 * 109.47061 * 329.99668 * 21 19 17 25 25 C 1.39865 * 119.80502 * 359.97438 * 6 5 4 26 26 Cl 1.73599 * 120.06305 * 179.97438 * 25 6 5 27 27 C 1.37896 * 119.87154 * 0.26110 * 25 6 5 28 28 H 1.09004 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46433 * 299.99435 * 1 2 3 30 30 H 1.09000 * 109.47368 * 59.99536 * 1 2 3 31 31 H 1.08010 * 119.93687 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.03984 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00227 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.46929 * 59.99834 * 12 10 9 35 35 H 1.08997 * 109.47276 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.46865 * 299.99798 * 12 10 9 37 37 H 1.09001 * 109.46965 * 54.99979 * 13 10 9 38 38 H 1.09001 * 109.46929 * 174.99669 * 13 10 9 39 39 H 1.09001 * 109.47017 * 299.99854 * 14 13 10 40 40 H 1.08996 * 109.46939 * 59.99445 * 14 13 10 41 41 H 1.09001 * 109.46965 * 299.99886 * 15 14 13 42 42 H 1.09001 * 109.46929 * 59.99576 * 15 14 13 43 43 H 0.96996 * 119.99507 * 359.97438 * 16 15 14 44 44 H 0.97001 * 120.00110 * 180.02562 * 20 19 17 45 45 H 1.07995 * 119.96354 * 179.74564 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4339 1.2797 -0.0005 5 6 4.0636 2.5036 0.0000 6 6 3.3054 3.6778 0.0005 7 6 3.9762 4.9918 0.0005 8 8 3.3148 6.0121 0.0005 9 7 5.3222 5.0612 0.0005 10 6 5.9884 6.3659 0.0011 11 1 5.4038 7.0721 0.5908 12 6 6.1083 6.8779 -1.4358 13 6 7.3846 6.2254 0.6107 14 6 7.2607 5.8336 2.0844 15 6 8.6569 5.6925 2.6939 16 7 8.5382 5.3179 4.1052 17 6 9.6646 5.1336 4.8617 18 1 10.6405 5.2639 4.4179 19 6 9.5521 4.7782 6.1989 20 7 8.3628 4.6189 6.7397 21 14 11.0887 4.5274 7.2311 22 1 11.4763 5.8142 7.8626 23 1 10.8163 3.5198 8.2874 24 1 12.1950 4.0486 6.3637 25 6 1.9087 3.6034 0.0000 26 17 0.9604 5.0575 0.0013 27 6 1.2865 2.3729 0.0044 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 4.0196 0.3722 -0.0014 32 1 5.1423 2.5566 0.0000 33 1 5.8498 4.2472 0.0002 34 1 5.1136 6.9780 -1.8700 35 1 6.6036 7.8489 -1.4354 36 1 6.6928 6.1718 -2.0254 37 1 7.9389 5.4546 0.0752 38 1 7.9134 7.1752 0.5304 39 1 6.7063 6.6044 2.6199 40 1 6.7319 4.8839 2.1646 41 1 9.2109 4.9215 2.1583 42 1 9.1861 6.6421 2.6135 43 1 7.6617 5.2006 4.5037 44 1 8.2842 4.3709 7.6741 45 1 0.2081 2.3137 0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734257017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -47.304583 kcal Electronic energy + Delta-G solvation = -26500.698543 eV Core-core repulsion = 22544.727979 eV Total energy + Delta-G solvation = -3955.970564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83131 -39.77186 -37.78901 -36.58812 -36.45329 -34.80913 -32.71250 -31.62060 -31.28642 -30.21188 -29.27169 -27.86845 -25.66776 -24.05277 -23.06095 -22.86557 -21.23641 -20.76760 -20.50186 -18.87119 -17.86412 -16.99951 -16.86982 -16.27881 -16.14164 -15.47872 -15.09767 -14.86020 -14.68189 -14.39111 -14.22797 -14.05003 -13.79735 -13.53902 -13.28505 -13.11663 -12.92606 -12.62663 -12.51665 -12.17843 -12.16207 -12.07783 -11.55658 -11.29584 -11.25269 -11.16849 -11.09502 -10.83733 -10.78284 -10.43077 -10.37665 -9.99012 -9.66592 -9.58262 -9.32075 -9.09539 -8.84406 -8.64507 -6.88984 -5.73632 -3.02298 0.47904 0.74947 1.89224 2.65429 2.72326 3.08231 3.45037 3.48130 3.49726 3.51721 4.24556 4.41313 4.50416 4.59733 4.64670 4.69178 4.76864 4.81564 5.00211 5.03018 5.08628 5.14022 5.19432 5.45520 5.58006 5.60081 5.63242 5.64288 5.66670 5.75720 5.82709 5.99422 6.05564 6.10450 6.15079 6.24009 6.38780 6.43738 6.52104 6.78716 6.89502 6.92676 7.46288 7.71963 8.19839 8.45382 9.56104 10.15522 10.49799 11.49330 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.002518 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.769900 B =11116.194109 C =12751.599216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.165 3.835 4 C -0.155 4.155 5 C -0.032 4.032 6 C -0.168 4.168 7 C 0.558 3.442 8 O -0.520 6.520 9 N -0.717 5.717 10 C 0.143 3.857 11 H 0.090 0.910 12 C -0.162 4.162 13 C -0.123 4.123 14 C -0.126 4.126 15 C 0.153 3.847 16 N -0.735 5.735 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.056 3.944 26 Cl -0.026 7.026 27 C -0.216 4.216 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.398 0.602 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 -6.597 -20.834 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.220 6.220 3 C 0.118 3.882 4 C -0.173 4.173 5 C -0.051 4.051 6 C -0.172 4.172 7 C 0.345 3.655 8 O -0.397 6.397 9 N -0.370 5.370 10 C 0.039 3.961 11 H 0.108 0.892 12 C -0.220 4.220 13 C -0.161 4.161 14 C -0.164 4.164 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.028 3.972 26 Cl 0.004 6.996 27 C -0.235 4.235 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.233 0.767 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.567 -5.914 -20.779 27.225 hybrid contribution 0.464 -0.446 0.858 1.073 sum -16.103 -6.360 -19.922 26.394 Atomic orbital electron populations 1.23193 0.77659 1.04545 1.01885 1.86084 1.22036 1.26206 1.87682 1.19102 0.92239 0.83914 0.92928 1.20473 0.91259 0.99088 1.06524 1.21123 1.00096 0.90252 0.93614 1.19724 0.92209 0.94487 1.10750 1.17908 0.82381 0.88343 0.76872 1.90861 1.64215 1.35771 1.48830 1.45995 1.05952 1.09723 1.75312 1.21046 0.93768 0.84651 0.96625 0.89159 1.22170 1.02200 1.01240 0.96388 1.21855 0.94859 1.02852 0.96563 1.21733 0.98970 1.01693 0.93965 1.20649 0.93496 0.96824 0.86503 1.42384 1.06593 1.83573 1.05311 1.19239 0.86963 1.38988 0.91848 0.91231 1.24757 0.96603 1.02718 0.97072 1.69665 1.21108 1.54597 1.12865 0.86187 0.82352 0.77474 0.80177 1.21729 1.21773 1.20781 1.20705 0.90877 0.88623 0.97044 1.98428 1.70674 1.34736 1.95807 1.21068 1.00988 0.90360 1.11132 0.87708 0.92070 0.92206 0.83740 0.83825 0.76681 0.92258 0.91568 0.92584 0.91451 0.90229 0.91917 0.92072 0.96593 0.96531 0.78324 0.93534 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.57 10.48 -18.83 -0.20 -2.77 16 3 C 0.17 1.53 6.69 -39.03 -0.26 1.27 16 4 C -0.15 -1.36 9.97 -39.49 -0.39 -1.76 16 5 C -0.03 -0.29 9.53 -39.22 -0.37 -0.67 16 6 C -0.17 -1.95 5.88 -104.93 -0.62 -2.57 16 7 C 0.56 7.38 7.72 -12.47 -0.10 7.29 16 8 O -0.52 -8.36 13.62 5.29 0.07 -8.29 16 9 N -0.72 -8.00 4.48 -54.85 -0.25 -8.24 16 10 C 0.14 1.64 2.57 -67.93 -0.17 1.47 16 11 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 12 C -0.16 -1.61 9.49 37.16 0.35 -1.26 16 13 C -0.12 -1.44 4.75 -26.73 -0.13 -1.56 16 14 C -0.13 -1.99 5.22 -26.73 -0.14 -2.13 16 15 C 0.15 3.07 6.26 -4.04 -0.03 3.04 16 16 N -0.73 -19.08 5.60 -59.91 -0.34 -19.41 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 21 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 C 0.06 0.65 6.35 -39.10 -0.25 0.40 16 26 Cl -0.03 -0.33 26.01 -51.86 -1.35 -1.68 16 27 C -0.22 -2.04 8.80 -39.46 -0.35 -2.39 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.26 7.64 -51.93 -0.40 -0.13 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.14 0.97 6.39 -52.49 -0.34 0.64 16 33 H 0.40 3.59 6.62 -40.82 -0.27 3.32 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.98 7.75 -51.93 -0.40 0.57 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.14 1.04 6.27 -52.49 -0.33 0.72 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -34.69 387.71 -8.83 -43.52 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.61 Total: 6.75 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.71 Total: -5.31 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.14 Total: -55.71 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.13 Total: -11.06 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.35 Total: -1.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.69 -8.83 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.782 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds