Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35709 * 116.99647 * 2 1 4 4 C 1.39061 * 119.90020 * 180.02562 * 3 2 1 5 5 C 1.37647 * 120.12983 * 180.02562 * 4 3 2 6 6 C 1.39775 * 119.92007 * 359.97438 * 5 4 3 7 7 C 1.47531 * 120.10027 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00074 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99561 * 359.97424 * 7 6 5 10 10 C 1.46497 * 119.99898 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47223 * 34.99279 * 10 9 7 12 12 C 1.53009 * 109.47079 * 274.99911 * 10 9 7 13 13 C 1.52999 * 109.47387 * 154.99713 * 10 9 7 14 14 C 1.52997 * 109.47302 * 295.00093 * 13 10 9 15 15 C 1.52999 * 109.47302 * 179.97438 * 14 13 10 16 16 N 1.46500 * 109.47175 * 179.97438 * 15 14 13 17 17 C 1.36929 * 119.99775 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00488 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47363 * 89.99805 * 21 19 17 23 23 H 1.48499 * 109.46713 * 209.99692 * 21 19 17 24 24 H 1.48501 * 109.47061 * 329.99668 * 21 19 17 25 25 C 1.39865 * 119.80502 * 359.97438 * 6 5 4 26 26 Cl 1.73599 * 120.06305 * 179.97438 * 25 6 5 27 27 C 1.37896 * 119.87154 * 0.26110 * 25 6 5 28 28 H 1.09004 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46433 * 299.99435 * 1 2 3 30 30 H 1.09000 * 109.47368 * 59.99536 * 1 2 3 31 31 H 1.08010 * 119.93687 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.03984 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00227 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.46929 * 59.99834 * 12 10 9 35 35 H 1.08997 * 109.47276 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.46865 * 299.99798 * 12 10 9 37 37 H 1.09001 * 109.46965 * 54.99979 * 13 10 9 38 38 H 1.09001 * 109.46929 * 174.99669 * 13 10 9 39 39 H 1.09001 * 109.47017 * 299.99854 * 14 13 10 40 40 H 1.08996 * 109.46939 * 59.99445 * 14 13 10 41 41 H 1.09001 * 109.46965 * 299.99886 * 15 14 13 42 42 H 1.09001 * 109.46929 * 59.99576 * 15 14 13 43 43 H 0.96996 * 119.99507 * 359.97438 * 16 15 14 44 44 H 0.97001 * 120.00110 * 180.02562 * 20 19 17 45 45 H 1.07995 * 119.96354 * 179.74564 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4339 1.2797 -0.0005 5 6 4.0636 2.5036 0.0000 6 6 3.3054 3.6778 0.0005 7 6 3.9762 4.9918 0.0005 8 8 3.3148 6.0121 0.0005 9 7 5.3222 5.0612 0.0005 10 6 5.9884 6.3659 0.0011 11 1 5.4038 7.0721 0.5908 12 6 6.1083 6.8779 -1.4358 13 6 7.3846 6.2254 0.6107 14 6 7.2607 5.8336 2.0844 15 6 8.6569 5.6925 2.6939 16 7 8.5382 5.3179 4.1052 17 6 9.6646 5.1336 4.8617 18 1 10.6405 5.2639 4.4179 19 6 9.5521 4.7782 6.1989 20 7 8.3628 4.6189 6.7397 21 14 11.0887 4.5274 7.2311 22 1 11.4763 5.8142 7.8626 23 1 10.8163 3.5198 8.2874 24 1 12.1950 4.0486 6.3637 25 6 1.9087 3.6034 0.0000 26 17 0.9604 5.0575 0.0013 27 6 1.2865 2.3729 0.0044 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 4.0196 0.3722 -0.0014 32 1 5.1423 2.5566 0.0000 33 1 5.8498 4.2472 0.0002 34 1 5.1136 6.9780 -1.8700 35 1 6.6036 7.8489 -1.4354 36 1 6.6928 6.1718 -2.0254 37 1 7.9389 5.4546 0.0752 38 1 7.9134 7.1752 0.5304 39 1 6.7063 6.6044 2.6199 40 1 6.7319 4.8839 2.1646 41 1 9.2109 4.9215 2.1583 42 1 9.1861 6.6421 2.6135 43 1 7.6617 5.2006 4.5037 44 1 8.2842 4.3709 7.6741 45 1 0.2081 2.3137 0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734257017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -69.741042 kcal Electronic energy + Delta-G solvation = -26501.671461 eV Core-core repulsion = 22544.727979 eV Total energy + Delta-G solvation = -3956.943482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59783 -40.61400 -38.58575 -37.75143 -37.30869 -36.46186 -34.20388 -32.91874 -32.03781 -31.41513 -30.46421 -28.35875 -27.21238 -25.12548 -24.44324 -23.72874 -22.45191 -21.99674 -21.45171 -19.57583 -19.11360 -18.65998 -17.68486 -17.02657 -16.83227 -16.66067 -16.20797 -16.04919 -15.90212 -15.51222 -15.36175 -15.22930 -14.85548 -14.78362 -14.49010 -14.16761 -13.88328 -13.70804 -13.40701 -13.14782 -13.03128 -12.98655 -12.85182 -12.76746 -12.37659 -12.23679 -12.20420 -12.12445 -12.03854 -11.85600 -11.82457 -11.66878 -11.46340 -10.92078 -10.58977 -10.07717 -10.06269 -9.39325 -8.99308 -7.94598 -5.23863 -0.32267 0.02290 1.04494 1.47520 1.49816 1.58263 1.79328 2.14911 2.21005 2.56717 2.64148 3.39068 3.56223 3.61903 3.75163 3.77987 4.01185 4.03722 4.14051 4.25648 4.32289 4.34722 4.35886 4.44786 4.46168 4.62114 4.70507 4.72873 4.85247 4.88858 4.89563 4.96237 4.96942 5.04230 5.05167 5.16929 5.35128 5.36283 5.40632 5.45592 5.52379 5.62372 6.17738 6.27832 6.57071 7.26201 7.33274 8.11036 8.32823 9.29219 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.002518 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.769900 B =11116.194109 C =12751.599216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.165 3.835 4 C -0.157 4.157 5 C -0.027 4.027 6 C -0.189 4.189 7 C 0.553 3.447 8 O -0.557 6.557 9 N -0.709 5.709 10 C 0.146 3.854 11 H 0.064 0.936 12 C -0.153 4.153 13 C -0.109 4.109 14 C -0.113 4.113 15 C 0.150 3.850 16 N -0.751 5.751 17 C -0.245 4.245 18 H 0.078 0.922 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.038 3.962 26 Cl -0.045 7.045 27 C -0.215 4.215 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.410 0.590 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.019 0.981 43 H 0.371 0.629 44 H 0.251 0.749 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 -7.998 -22.122 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.175 4.175 5 C -0.045 4.045 6 C -0.193 4.193 7 C 0.341 3.659 8 O -0.437 6.437 9 N -0.362 5.362 10 C 0.042 3.958 11 H 0.082 0.918 12 C -0.211 4.211 13 C -0.147 4.147 14 C -0.151 4.151 15 C 0.024 3.976 16 N -0.393 5.393 17 C -0.377 4.377 18 H 0.096 0.904 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.191 1.191 25 C 0.010 3.990 26 Cl -0.016 7.016 27 C -0.234 4.234 28 H 0.144 0.856 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.247 0.753 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.202 0.798 44 H 0.060 0.940 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.214 -7.325 -22.119 27.827 hybrid contribution 0.011 -0.080 1.206 1.209 sum -15.202 -7.405 -20.913 26.894 Atomic orbital electron populations 1.23497 0.75880 1.06272 1.02631 1.86084 1.23922 1.25615 1.87301 1.19266 0.92637 0.84153 0.92142 1.20783 0.91442 0.99673 1.05637 1.21361 1.01131 0.89476 0.92559 1.19762 0.92444 0.94499 1.12614 1.18228 0.82811 0.88597 0.76275 1.90836 1.65047 1.37074 1.50723 1.45935 1.05526 1.10204 1.74499 1.20962 0.93090 0.84386 0.97383 0.91774 1.22086 1.01703 1.02321 0.95037 1.21754 0.95252 1.04150 0.93540 1.21593 0.96110 1.01089 0.96313 1.20865 0.96100 0.96803 0.83848 1.42666 1.05417 1.83707 1.07547 1.19679 0.88032 1.37636 0.92382 0.90445 1.25629 0.99628 1.03398 0.98499 1.69832 1.23330 1.56250 1.12865 0.85110 0.79063 0.77096 0.78327 1.21500 1.22166 1.19104 1.20905 0.91040 0.88633 0.98412 1.98413 1.71092 1.36059 1.96033 1.21221 1.01997 0.89680 1.10550 0.85599 0.91624 0.91164 0.81709 0.81506 0.75285 0.93890 0.90381 0.90797 0.89104 0.89116 0.93807 0.92309 0.95402 0.96329 0.79750 0.94041 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.71 10.48 -90.30 -0.95 -5.66 16 3 C 0.17 2.82 6.69 22.63 0.15 2.97 16 4 C -0.16 -2.47 9.97 22.33 0.22 -2.25 16 5 C -0.03 -0.45 9.53 22.50 0.21 -0.23 16 6 C -0.19 -4.36 5.88 -20.06 -0.12 -4.48 16 7 C 0.55 14.76 7.72 86.69 0.67 15.43 16 8 O -0.56 -18.62 13.62 -3.99 -0.05 -18.67 16 9 N -0.71 -15.16 4.48 -445.70 -2.00 -17.16 16 10 C 0.15 3.21 2.57 44.99 0.12 3.32 16 11 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 12 C -0.15 -2.80 9.49 71.99 0.68 -2.12 16 13 C -0.11 -2.30 4.75 30.59 0.15 -2.15 16 14 C -0.11 -3.47 5.22 30.59 0.16 -3.31 16 15 C 0.15 5.82 6.26 86.38 0.54 6.36 16 16 N -0.75 -38.93 5.60 -343.45 -1.92 -40.85 16 17 C -0.25 -13.89 9.99 84.04 0.84 -13.05 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 21 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 C 0.04 0.90 6.35 22.58 0.14 1.04 16 26 Cl -0.05 -1.19 26.01 -2.72 -0.07 -1.26 16 27 C -0.22 -3.91 8.80 22.35 0.20 -3.72 16 28 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.46 7.64 -2.39 -0.02 0.44 16 30 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 31 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.17 1.86 6.39 -2.91 -0.02 1.84 16 33 H 0.41 6.59 6.62 -92.71 -0.61 5.98 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.82 7.75 -2.39 -0.02 1.81 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.37 20.70 7.67 -92.71 -0.71 19.99 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 45 H 0.16 2.20 6.27 -2.91 -0.02 2.18 16 Total: -1.00 -75.70 387.71 2.55 -73.14 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.31 Total: 27.56 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.54 Total: -5.17 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -3.64 Total: -118.38 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.00 Total: -24.33 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.07 Total: -1.26 kcal Total: -75.70 2.55 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.402 kcal (2) G-P(sol) polarization free energy of solvation -75.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds