Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35713 * 117.00141 * 2 1 4 4 C 1.39055 * 119.90043 * 0.02562 * 3 2 1 5 5 C 1.37647 * 120.12578 * 179.97438 * 4 3 2 6 6 C 1.39781 * 119.92078 * 359.79120 * 5 4 3 7 7 C 1.47533 * 120.09466 * 180.22678 * 6 5 4 8 8 O 1.21599 * 119.99507 * 180.23073 * 7 6 5 9 9 N 1.34768 * 120.00446 * 0.23884 * 7 6 5 10 10 C 1.46502 * 120.00221 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47232 * 324.99944 * 10 9 7 12 12 C 1.53004 * 109.46926 * 84.99932 * 10 9 7 13 13 C 1.53005 * 109.47056 * 204.99824 * 10 9 7 14 14 C 1.52999 * 109.46832 * 65.00155 * 13 10 9 15 15 C 1.53005 * 109.46832 * 180.02562 * 14 13 10 16 16 N 1.46501 * 109.47137 * 180.02562 * 15 14 13 17 17 C 1.36941 * 119.99832 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00096 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99863 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47368 * 89.99831 * 21 19 17 23 23 H 1.48495 * 109.47078 * 210.00007 * 21 19 17 24 24 H 1.48506 * 109.47135 * 329.99633 * 21 19 17 25 25 C 1.39848 * 119.80537 * 0.46673 * 6 5 4 26 26 Cl 1.73599 * 120.06716 * 179.79217 * 25 6 5 27 27 C 1.37904 * 119.87156 * 359.51086 * 25 6 5 28 28 H 1.09004 * 109.46343 * 300.00027 * 1 2 3 29 29 H 1.09003 * 109.46936 * 59.99329 * 1 2 3 30 30 H 1.08991 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.93889 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.03432 * 180.02562 * 5 4 3 33 33 H 0.97007 * 119.99746 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47238 * 299.99853 * 12 10 9 35 35 H 1.08999 * 109.47156 * 59.99965 * 12 10 9 36 36 H 1.08995 * 109.46487 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.46633 * 184.99976 * 13 10 9 38 38 H 1.08998 * 109.47217 * 305.00013 * 13 10 9 39 39 H 1.08997 * 109.47365 * 299.99372 * 14 13 10 40 40 H 1.08998 * 109.47336 * 59.99931 * 14 13 10 41 41 H 1.09006 * 109.46874 * 299.99906 * 15 14 13 42 42 H 1.08998 * 109.47217 * 59.99858 * 15 14 13 43 43 H 0.96995 * 119.99797 * 359.97438 * 16 15 14 44 44 H 0.97003 * 119.99816 * 180.02562 * 20 19 17 45 45 H 1.07997 * 119.96149 * 180.23497 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9060 3.6030 0.0011 6 6 3.3017 3.6797 0.0055 7 6 3.9703 4.9948 0.0111 8 8 5.1845 5.0594 0.0107 9 7 3.2354 6.1244 0.0169 10 6 3.8994 7.4303 0.0231 11 1 4.8146 7.3698 0.6119 12 6 4.2421 7.8349 -1.4121 13 6 2.9653 8.4745 0.6381 14 6 2.7222 8.1370 2.1105 15 6 1.7877 9.1809 2.7253 16 7 1.5554 8.8581 4.1354 17 6 0.7454 9.6581 4.8964 18 1 0.2775 10.5267 4.4570 19 6 0.5249 9.3521 6.2323 20 7 -0.2540 10.1206 6.9636 21 14 1.3336 7.8493 6.9920 22 1 2.6545 8.2290 7.5542 23 1 0.4692 7.3165 8.0754 24 1 1.5200 6.8076 5.9501 25 6 4.0623 2.5062 -0.0005 26 17 5.7961 2.5935 -0.0006 27 6 3.4325 1.2794 -0.0006 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2074 2.3146 0.0005 32 1 1.3148 4.5068 0.0019 33 1 2.2667 6.0728 0.0170 34 1 4.9075 7.0911 -1.8503 35 1 3.3269 7.8955 -2.0010 36 1 4.7365 8.8063 -1.4074 37 1 3.4229 9.4608 0.5621 38 1 2.0156 8.4724 0.1032 39 1 2.2647 7.1507 2.1865 40 1 3.6720 8.1392 2.6453 41 1 2.2448 10.1675 2.6493 42 1 0.8380 9.1783 2.1904 43 1 1.9753 8.0778 4.5298 44 1 -0.4078 9.9069 7.8972 45 1 4.0185 0.3722 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734257018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -43.116744 kcal Electronic energy + Delta-G solvation = -26631.044113 eV Core-core repulsion = 22675.255148 eV Total energy + Delta-G solvation = -3955.788965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90165 -39.84447 -37.88559 -36.69983 -36.47114 -35.01076 -32.82183 -31.86351 -31.15527 -30.46116 -29.63501 -27.88592 -25.92443 -24.13437 -23.22547 -22.53996 -21.18677 -20.96317 -20.59928 -18.93173 -17.87181 -17.50869 -17.06045 -16.32615 -16.14890 -15.60375 -15.16238 -14.90869 -14.75698 -14.46986 -14.41895 -14.03564 -13.85537 -13.75631 -13.37265 -13.14491 -12.92430 -12.66443 -12.60735 -12.24991 -12.21428 -12.16416 -11.70810 -11.60577 -11.33339 -11.27603 -11.23013 -10.96176 -10.90563 -10.51713 -10.39876 -10.11081 -9.65859 -9.59199 -9.33183 -9.18622 -8.89038 -8.74544 -7.22702 -5.77064 -3.12272 0.39915 0.68393 1.77176 2.57420 2.75431 3.01489 3.37668 3.39965 3.41486 3.45485 4.11579 4.37678 4.44889 4.52563 4.59368 4.65672 4.66920 4.72333 4.83342 4.97234 4.99340 5.08510 5.25334 5.36131 5.43005 5.46251 5.53591 5.56416 5.63990 5.67869 5.71773 5.86510 5.89954 5.93866 6.01927 6.09048 6.14317 6.29150 6.43096 6.73479 6.74878 6.78385 7.37179 7.99711 8.11271 8.42393 9.21835 9.94516 10.14559 11.41475 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.002894 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.961490 B = 9674.535044 C =11276.429526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.166 3.834 4 C -0.213 4.213 5 C -0.030 4.030 6 C -0.168 4.168 7 C 0.558 3.442 8 O -0.519 6.519 9 N -0.718 5.718 10 C 0.143 3.857 11 H 0.090 0.910 12 C -0.162 4.162 13 C -0.123 4.123 14 C -0.130 4.130 15 C 0.157 3.843 16 N -0.758 5.758 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.054 3.946 26 Cl -0.021 7.021 27 C -0.158 4.158 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.397 0.603 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 -19.519 -21.532 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.119 3.881 4 C -0.232 4.232 5 C -0.049 4.049 6 C -0.173 4.173 7 C 0.344 3.656 8 O -0.395 6.395 9 N -0.371 5.371 10 C 0.039 3.961 11 H 0.109 0.891 12 C -0.220 4.220 13 C -0.161 4.161 14 C -0.168 4.168 15 C 0.030 3.970 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.025 3.975 26 Cl 0.009 6.991 27 C -0.178 4.178 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.233 0.767 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.373 -19.442 -21.463 29.453 hybrid contribution -0.265 -0.954 0.751 1.243 sum 5.108 -20.395 -20.711 29.513 Atomic orbital electron populations 1.23201 0.77394 1.04598 1.01965 1.86056 1.22167 1.26349 1.87647 1.19019 0.91633 0.84602 0.92862 1.21288 1.00900 0.91801 1.09238 1.21089 0.92505 0.98046 0.93296 1.19707 0.93431 0.93225 1.10895 1.17919 0.87093 0.83643 0.76897 1.90869 1.12830 1.87107 1.48729 1.46010 1.10066 1.05623 1.75412 1.21055 0.96905 0.81414 0.96754 0.89144 1.22167 1.01717 1.01829 0.96294 1.21845 0.99487 0.98588 0.96198 1.21790 1.00592 0.99945 0.94476 1.20629 0.95657 0.95456 0.85267 1.42740 1.58907 1.31565 1.07148 1.19076 1.20409 1.06028 0.91895 0.89253 1.24677 0.99696 0.98518 0.96346 1.69703 1.41444 1.39496 1.07688 0.86542 0.79228 0.83760 0.78963 1.21014 1.21712 1.20397 1.20641 0.86852 0.92629 0.97332 1.98433 1.06376 1.98489 1.95799 1.20181 0.91765 0.97428 1.08406 0.91961 0.92122 0.87723 0.84074 0.84253 0.76733 0.92209 0.92551 0.91493 0.89997 0.91287 0.92178 0.91910 0.95607 0.95781 0.80714 0.93067 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.46 10.48 -18.84 -0.20 -2.66 16 3 C 0.17 1.46 6.69 -39.03 -0.26 1.20 16 4 C -0.21 -1.64 9.01 -39.49 -0.36 -1.99 16 5 C -0.03 -0.26 9.53 -39.22 -0.37 -0.63 16 6 C -0.17 -1.86 5.88 -104.93 -0.62 -2.47 16 7 C 0.56 6.99 7.72 -12.47 -0.10 6.89 16 8 O -0.52 -7.99 13.62 5.28 0.07 -7.92 16 9 N -0.72 -7.45 4.48 -54.84 -0.25 -7.70 16 10 C 0.14 1.52 2.57 -67.92 -0.17 1.35 16 11 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 12 C -0.16 -1.52 9.48 37.16 0.35 -1.16 16 13 C -0.12 -1.32 4.75 -26.73 -0.13 -1.45 16 14 C -0.13 -1.89 5.22 -26.73 -0.14 -2.03 16 15 C 0.16 2.96 6.26 -4.04 -0.03 2.94 16 16 N -0.76 -18.29 5.41 -59.90 -0.32 -18.62 16 17 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 20 N -0.94 -29.65 13.97 55.49 0.78 -28.87 16 21 Si 0.88 22.46 27.74 -169.99 -4.71 17.75 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 25 C 0.05 0.61 6.35 -39.10 -0.25 0.36 16 26 Cl -0.02 -0.25 26.01 -51.86 -1.35 -1.60 16 27 C -0.16 -1.53 9.75 -39.46 -0.38 -1.91 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.14 0.73 6.27 -52.48 -0.33 0.40 16 32 H 0.14 0.84 6.40 -52.49 -0.34 0.51 16 33 H 0.40 3.27 6.62 -40.82 -0.27 3.00 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.87 7.75 -51.93 -0.40 0.46 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 45 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -35.23 384.59 -8.47 -43.71 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.57 Total: 5.12 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.71 Total: -5.00 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.21 Total: -55.19 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.13 Total: -10.58 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.35 Total: -1.60 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.23 -8.47 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.589 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds