Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35713 * 117.00141 * 2 1 4 4 C 1.39055 * 119.90043 * 0.02562 * 3 2 1 5 5 C 1.37647 * 120.12578 * 179.97438 * 4 3 2 6 6 C 1.39781 * 119.92078 * 359.79120 * 5 4 3 7 7 C 1.47533 * 120.09466 * 180.22678 * 6 5 4 8 8 O 1.21599 * 119.99507 * 180.23073 * 7 6 5 9 9 N 1.34768 * 120.00446 * 0.23884 * 7 6 5 10 10 C 1.46502 * 120.00221 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47232 * 324.99944 * 10 9 7 12 12 C 1.53004 * 109.46926 * 84.99932 * 10 9 7 13 13 C 1.53005 * 109.47056 * 204.99824 * 10 9 7 14 14 C 1.52999 * 109.46832 * 65.00155 * 13 10 9 15 15 C 1.53005 * 109.46832 * 180.02562 * 14 13 10 16 16 N 1.46501 * 109.47137 * 180.02562 * 15 14 13 17 17 C 1.36941 * 119.99832 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00096 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99863 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47368 * 89.99831 * 21 19 17 23 23 H 1.48495 * 109.47078 * 210.00007 * 21 19 17 24 24 H 1.48506 * 109.47135 * 329.99633 * 21 19 17 25 25 C 1.39848 * 119.80537 * 0.46673 * 6 5 4 26 26 Cl 1.73599 * 120.06716 * 179.79217 * 25 6 5 27 27 C 1.37904 * 119.87156 * 359.51086 * 25 6 5 28 28 H 1.09004 * 109.46343 * 300.00027 * 1 2 3 29 29 H 1.09003 * 109.46936 * 59.99329 * 1 2 3 30 30 H 1.08991 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.93889 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.03432 * 180.02562 * 5 4 3 33 33 H 0.97007 * 119.99746 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47238 * 299.99853 * 12 10 9 35 35 H 1.08999 * 109.47156 * 59.99965 * 12 10 9 36 36 H 1.08995 * 109.46487 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.46633 * 184.99976 * 13 10 9 38 38 H 1.08998 * 109.47217 * 305.00013 * 13 10 9 39 39 H 1.08997 * 109.47365 * 299.99372 * 14 13 10 40 40 H 1.08998 * 109.47336 * 59.99931 * 14 13 10 41 41 H 1.09006 * 109.46874 * 299.99906 * 15 14 13 42 42 H 1.08998 * 109.47217 * 59.99858 * 15 14 13 43 43 H 0.96995 * 119.99797 * 359.97438 * 16 15 14 44 44 H 0.97003 * 119.99816 * 180.02562 * 20 19 17 45 45 H 1.07997 * 119.96149 * 180.23497 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9060 3.6030 0.0011 6 6 3.3017 3.6797 0.0055 7 6 3.9703 4.9948 0.0111 8 8 5.1845 5.0594 0.0107 9 7 3.2354 6.1244 0.0169 10 6 3.8994 7.4303 0.0231 11 1 4.8146 7.3698 0.6119 12 6 4.2421 7.8349 -1.4121 13 6 2.9653 8.4745 0.6381 14 6 2.7222 8.1370 2.1105 15 6 1.7877 9.1809 2.7253 16 7 1.5554 8.8581 4.1354 17 6 0.7454 9.6581 4.8964 18 1 0.2775 10.5267 4.4570 19 6 0.5249 9.3521 6.2323 20 7 -0.2540 10.1206 6.9636 21 14 1.3336 7.8493 6.9920 22 1 2.6545 8.2290 7.5542 23 1 0.4692 7.3165 8.0754 24 1 1.5200 6.8076 5.9501 25 6 4.0623 2.5062 -0.0005 26 17 5.7961 2.5935 -0.0006 27 6 3.4325 1.2794 -0.0006 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2074 2.3146 0.0005 32 1 1.3148 4.5068 0.0019 33 1 2.2667 6.0728 0.0170 34 1 4.9075 7.0911 -1.8503 35 1 3.3269 7.8955 -2.0010 36 1 4.7365 8.8063 -1.4074 37 1 3.4229 9.4608 0.5621 38 1 2.0156 8.4724 0.1032 39 1 2.2647 7.1507 2.1865 40 1 3.6720 8.1392 2.6453 41 1 2.2448 10.1675 2.6493 42 1 0.8380 9.1783 2.1904 43 1 1.9753 8.0778 4.5298 44 1 -0.4078 9.9069 7.8972 45 1 4.0185 0.3722 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734257018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -66.513666 kcal Electronic energy + Delta-G solvation = -26632.058680 eV Core-core repulsion = 22675.255148 eV Total energy + Delta-G solvation = -3956.803532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60395 -40.61417 -38.62747 -37.81825 -37.26752 -36.57605 -34.26042 -33.17136 -32.08738 -31.52859 -30.63638 -28.30666 -27.35471 -24.97878 -24.34241 -23.71221 -22.52777 -21.97671 -21.47666 -19.62529 -19.55796 -18.62719 -17.77567 -16.96668 -16.81429 -16.62613 -16.27455 -16.09590 -15.86675 -15.77802 -15.48641 -15.09028 -14.93014 -14.66019 -14.53763 -14.21578 -13.85904 -13.76157 -13.52098 -13.47812 -13.12092 -13.04565 -12.84951 -12.78423 -12.49221 -12.29149 -12.08746 -12.02497 -11.98272 -11.89944 -11.86351 -11.70795 -11.51186 -10.97493 -10.59408 -10.08343 -10.03533 -9.42049 -9.29657 -8.04115 -5.37138 -0.33639 0.01869 0.99696 1.36577 1.39773 1.46800 1.78348 2.12823 2.29992 2.46904 2.62884 3.27680 3.49314 3.53274 3.69449 3.83811 3.91856 3.98502 4.11834 4.16222 4.20325 4.36256 4.40973 4.42464 4.58280 4.59399 4.67543 4.76628 4.79654 4.84478 4.87625 4.93519 4.98216 5.03384 5.07117 5.16210 5.28346 5.34257 5.37757 5.44597 5.61436 5.75364 6.19914 6.20842 6.56593 7.07400 7.25865 7.85016 8.02631 9.17555 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.002894 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.961490 B = 9674.535044 C =11276.429526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.166 3.834 4 C -0.207 4.207 5 C -0.025 4.025 6 C -0.189 4.189 7 C 0.553 3.447 8 O -0.556 6.556 9 N -0.709 5.709 10 C 0.146 3.854 11 H 0.067 0.933 12 C -0.155 4.155 13 C -0.111 4.111 14 C -0.118 4.118 15 C 0.152 3.848 16 N -0.763 5.763 17 C -0.235 4.235 18 H 0.058 0.942 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.954 3.046 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.253 1.253 25 C 0.038 3.962 26 Cl -0.042 7.042 27 C -0.168 4.168 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.410 0.590 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.023 0.977 42 H 0.031 0.969 43 H 0.364 0.636 44 H 0.258 0.742 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -20.981 -22.803 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.119 3.881 4 C -0.226 4.226 5 C -0.043 4.043 6 C -0.193 4.193 7 C 0.341 3.659 8 O -0.436 6.436 9 N -0.362 5.362 10 C 0.042 3.958 11 H 0.085 0.915 12 C -0.213 4.213 13 C -0.149 4.149 14 C -0.156 4.156 15 C 0.026 3.974 16 N -0.409 5.409 17 C -0.366 4.366 18 H 0.076 0.924 19 C -0.255 4.255 20 N -0.635 5.635 21 Si 0.781 3.219 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.177 1.177 25 C 0.010 3.990 26 Cl -0.013 7.013 27 C -0.187 4.187 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.189 0.811 32 H 0.183 0.817 33 H 0.247 0.753 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.197 0.803 44 H 0.067 0.933 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.260 -20.914 -22.790 31.224 hybrid contribution -0.041 -0.481 1.074 1.178 sum 4.219 -21.395 -21.716 30.776 Atomic orbital electron populations 1.23523 0.75385 1.06212 1.03049 1.86053 1.24250 1.26001 1.87270 1.19134 0.91406 0.85492 0.92085 1.21622 1.02341 0.90907 1.07689 1.21377 0.91416 0.99499 0.92054 1.19739 0.94610 0.92240 1.12689 1.18215 0.86808 0.84562 0.76308 1.90848 1.14454 1.87662 1.50611 1.45933 1.10642 1.05037 1.74574 1.20962 0.96012 0.81500 0.97306 0.91456 1.22092 1.02203 1.01748 0.95236 1.21756 1.00619 0.98876 0.93636 1.21667 0.98834 0.98671 0.96430 1.20855 0.96946 0.96744 0.82821 1.42815 1.58103 1.31021 1.08939 1.19081 1.19882 1.05323 0.92356 0.92385 1.25503 1.00934 1.02084 0.97020 1.69879 1.43674 1.41889 1.08014 0.85424 0.77822 0.80330 0.78296 1.20764 1.21963 1.17712 1.20785 0.85936 0.93545 0.98761 1.98416 1.08263 1.98562 1.96048 1.20274 0.92658 0.97091 1.08689 0.91162 0.90621 0.86076 0.81071 0.81660 0.75261 0.93921 0.90914 0.90458 0.89134 0.89173 0.91684 0.92916 0.95929 0.95086 0.80315 0.93289 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.42 10.48 -90.34 -0.95 -5.37 16 3 C 0.17 2.59 6.69 22.63 0.15 2.74 16 4 C -0.21 -2.51 9.01 22.33 0.20 -2.31 16 5 C -0.02 -0.35 9.53 22.50 0.21 -0.13 16 6 C -0.19 -3.95 5.88 -20.06 -0.12 -4.07 16 7 C 0.55 13.44 7.72 86.70 0.67 14.11 16 8 O -0.56 -17.40 13.62 -4.03 -0.05 -17.45 16 9 N -0.71 -13.26 4.48 -445.69 -2.00 -15.25 16 10 C 0.15 2.85 2.57 44.99 0.12 2.97 16 11 H 0.07 1.66 7.58 -2.39 -0.02 1.65 16 12 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 13 C -0.11 -2.05 4.75 30.60 0.15 -1.91 16 14 C -0.12 -3.13 5.22 30.60 0.16 -2.97 16 15 C 0.15 5.45 6.26 86.38 0.54 5.99 16 16 N -0.76 -35.68 5.41 -343.44 -1.86 -37.54 16 17 C -0.24 -13.52 10.47 84.03 0.88 -12.64 16 18 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 19 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.98 -63.34 13.97 21.65 0.30 -63.04 16 21 Si 0.95 45.92 27.74 68.60 1.90 47.82 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 24 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 25 C 0.04 0.85 6.35 22.58 0.14 0.99 16 26 Cl -0.04 -1.08 26.01 -2.72 -0.07 -1.15 16 27 C -0.17 -3.14 9.75 22.35 0.22 -2.92 16 28 H 0.07 0.29 7.65 -2.38 -0.02 0.27 16 29 H 0.08 0.20 7.65 -2.39 -0.02 0.18 16 30 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.17 0.99 6.27 -2.91 -0.02 0.97 16 32 H 0.17 1.33 6.40 -2.91 -0.02 1.32 16 33 H 0.41 5.40 6.62 -92.70 -0.61 4.79 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.67 7.75 -2.39 -0.02 1.65 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.36 16.39 5.53 -92.71 -0.51 15.88 16 44 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -78.01 384.59 2.70 -75.32 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.17 Total: 20.87 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.58 Total: -4.21 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -3.55 Total: -115.83 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.00 Total: -22.82 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.15 kcal Total: -78.01 2.70 -75.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.804 kcal (2) G-P(sol) polarization free energy of solvation -78.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds