Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 C 1.53005 * 109.47070 * 120.00065 * 2 1 3 5 5 C 1.52996 * 109.47277 * 184.99807 * 4 2 1 6 6 C 1.53005 * 109.47277 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47286 * 180.02562 * 6 5 4 8 8 C 1.34769 * 119.99984 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99892 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00079 * 179.97438 * 8 7 6 11 11 S 1.81000 * 109.47309 * 180.02562 * 10 8 7 12 12 C 1.76195 * 99.99972 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00119 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99935 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00176 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46959 * 60.00055 * 16 14 12 18 18 H 1.48501 * 109.47183 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47210 * 299.99837 * 16 14 12 20 20 N 1.46502 * 109.47399 * 240.00110 * 2 1 3 21 21 C 1.34769 * 120.00003 * 85.00006 * 20 2 1 22 22 O 1.21614 * 120.00201 * 0.02562 * 21 20 2 23 23 C 1.47378 * 120.00151 * 180.02562 * 21 20 2 24 24 C 1.47020 * 127.19340 * 179.97438 * 23 21 20 25 25 C 1.34184 * 105.95357 * 179.97438 * 24 23 21 26 26 O 1.34209 * 109.12515 * 0.02562 * 25 24 23 27 27 C 1.33658 * 110.90640 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47193 * 299.99891 * 1 2 3 29 29 H 1.09009 * 109.46751 * 60.00065 * 1 2 3 30 30 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46781 * 305.00490 * 4 2 1 32 32 H 1.09005 * 109.46862 * 65.00021 * 4 2 1 33 33 H 1.08997 * 109.47212 * 300.00563 * 5 4 2 34 34 H 1.09005 * 109.47000 * 60.00298 * 5 4 2 35 35 H 1.09003 * 109.46618 * 300.00551 * 6 5 4 36 36 H 1.08993 * 109.46591 * 59.99963 * 6 5 4 37 37 H 0.97003 * 119.99701 * 0.02562 * 7 6 5 38 38 H 1.09006 * 109.46921 * 300.00224 * 10 8 7 39 39 H 1.08994 * 109.46976 * 59.99678 * 10 8 7 40 40 H 0.97005 * 119.99899 * 180.02562 * 15 14 12 41 41 H 0.97000 * 119.99846 * 265.00668 * 20 2 1 42 42 H 1.07999 * 127.02375 * 0.22997 * 24 23 21 43 43 H 1.07998 * 125.43737 * 180.02562 * 25 24 23 44 44 H 1.08002 * 125.79551 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3137 6 6 4.0747 -1.3341 2.5634 7 7 5.5347 -1.2303 2.6254 8 6 6.2076 -1.7954 3.6472 9 8 5.6045 -2.3902 4.5152 10 6 7.7095 -1.6891 3.7108 11 16 8.3129 -2.5429 5.1883 12 6 10.0445 -2.2673 5.0153 13 1 10.4207 -1.7094 4.1705 14 6 10.9251 -2.7681 5.9640 15 7 10.4666 -3.4485 6.9933 16 14 12.7611 -2.4766 5.7802 17 1 13.0323 -1.0166 5.7743 18 1 13.4788 -3.1083 6.9164 19 1 13.2316 -3.0726 4.5041 20 7 2.0184 -0.6906 -1.1962 21 6 2.1471 -0.0182 -2.3571 22 8 1.8583 1.1618 -2.4116 23 6 2.6379 -0.7131 -3.5606 24 6 2.8374 -0.1387 -4.8991 25 6 3.2945 -1.1405 -5.6660 26 8 3.3883 -2.2548 -4.9238 27 6 3.0022 -2.0235 -3.6652 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2056 33 1 3.9993 -1.0728 0.4260 34 1 3.8531 0.4369 1.3575 35 1 3.6399 -0.8742 3.4508 36 1 3.7862 -2.3843 2.5201 37 1 6.0170 -0.7548 1.9310 38 1 8.1441 -2.1487 2.8231 39 1 7.9979 -0.6389 3.7543 40 1 11.0821 -3.7982 7.6566 41 1 2.2490 -1.6318 -1.1526 42 1 2.6572 0.8821 -5.2023 43 1 3.5466 -1.0626 -6.7132 44 1 2.9823 -2.7505 -2.8668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756276525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -104.636920 kcal Electronic energy + Delta-G solvation = -25418.080013 eV Core-core repulsion = 21461.667039 eV Total energy + Delta-G solvation = -3956.412974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.46316 -40.77170 -40.51018 -37.80744 -36.05005 -34.58127 -34.12533 -33.31310 -31.92034 -30.60681 -30.16052 -27.70993 -26.74472 -25.00594 -22.84332 -22.43633 -22.08382 -21.49413 -21.16698 -19.80767 -19.33726 -17.74963 -17.55285 -17.31197 -17.08714 -16.89007 -16.86905 -16.66972 -15.88948 -15.79206 -15.77411 -15.49014 -14.74986 -14.70252 -14.52277 -14.34430 -13.99553 -13.84946 -13.81171 -13.39188 -13.16749 -13.12992 -13.10406 -12.86047 -12.65035 -12.51619 -12.32670 -11.89863 -11.74017 -11.65567 -11.12881 -11.12688 -10.94171 -10.84942 -10.27935 -10.16134 -10.08036 -9.72424 -8.66388 -8.34238 -6.12382 0.37654 1.13390 1.27655 1.44139 1.47419 1.57319 1.62659 2.02192 2.21037 2.26950 2.32744 2.34192 2.99658 3.32588 3.59016 3.68113 3.78807 3.92696 4.01902 4.07578 4.13574 4.28122 4.31441 4.42619 4.51633 4.53003 4.57022 4.69167 4.74192 4.75664 4.84614 4.92575 5.01168 5.08394 5.19320 5.26999 5.32348 5.34896 5.41843 5.49326 5.54203 6.00552 6.19867 6.51921 6.54448 7.06894 7.21756 7.26051 8.74615 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.001772 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.909636 B =15793.146935 C =17305.998984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.119 3.881 7 N -0.715 5.715 8 C 0.532 3.468 9 O -0.567 6.567 10 C -0.131 4.131 11 S -0.151 6.151 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.261 1.261 20 N -0.706 5.706 21 C 0.586 3.414 22 O -0.586 6.586 23 C -0.271 4.271 24 C -0.200 4.200 25 C -0.026 4.026 26 O -0.180 6.180 27 C 0.044 3.956 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.413 0.587 42 H 0.152 0.848 43 H 0.243 0.757 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.957 4.604 -25.979 32.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.004 4.004 7 N -0.368 5.368 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.282 4.282 11 S 0.076 5.924 12 C -0.695 4.695 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.186 1.186 20 N -0.358 5.358 21 C 0.375 3.625 22 O -0.468 6.468 23 C -0.276 4.276 24 C -0.220 4.220 25 C -0.092 4.092 26 O -0.074 6.074 27 C -0.027 4.027 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.252 0.748 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.259 0.741 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -20.061 4.095 -24.528 31.951 hybrid contribution 1.849 0.982 -0.906 2.282 sum -18.212 5.077 -25.434 31.691 Atomic orbital electron populations 1.22139 0.94604 1.02970 1.02138 1.20968 0.94355 0.96898 0.83640 0.91153 1.21774 0.94070 1.02599 0.96975 1.21726 0.96493 1.01080 0.96426 1.21450 0.78655 1.01134 0.99168 1.45799 1.08308 1.56677 1.26063 1.20040 0.88836 0.77889 0.81433 1.90689 1.70437 1.43359 1.40035 1.23387 0.94987 1.05795 1.04060 1.85553 1.05814 1.71669 1.29383 1.23171 0.91715 1.41259 1.13376 0.89948 1.26133 1.05226 0.93950 0.93898 1.70178 1.37464 1.34871 1.12180 0.85007 0.75724 0.79007 0.78280 1.18748 1.20401 1.18602 1.45848 1.66767 1.14466 1.08734 1.17541 0.76404 0.85623 0.82915 1.90765 1.52683 1.17643 1.85701 1.21611 1.14288 0.95940 0.95754 1.22965 1.05671 1.01491 0.91861 1.24572 1.03460 0.82285 0.98847 1.83852 1.66181 1.37127 1.20284 1.25116 0.95503 0.96212 0.85844 0.90378 0.94335 0.90940 0.89002 0.89034 0.90031 0.91131 0.92558 0.91746 0.74839 0.87179 0.87426 0.91988 0.74966 0.83067 0.74125 0.73535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 71.98 0.68 -1.11 16 2 C 0.15 1.67 2.57 44.99 0.12 1.78 16 3 H 0.07 1.15 7.58 -2.39 -0.02 1.14 16 4 C -0.12 -0.94 4.75 30.59 0.15 -0.80 16 5 C -0.12 -1.29 5.22 30.59 0.16 -1.13 16 6 C 0.12 2.21 5.67 86.38 0.49 2.70 16 7 N -0.71 -16.59 5.56 -463.07 -2.57 -19.16 16 8 C 0.53 19.02 7.85 87.66 0.69 19.71 16 9 O -0.57 -25.69 15.86 -3.02 -0.05 -25.74 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 12 C -0.55 -31.12 9.50 67.95 0.65 -30.47 16 13 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 14 C 0.01 0.72 5.49 84.86 0.47 1.19 16 15 N -0.91 -55.75 13.22 21.65 0.29 -55.47 16 16 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 17 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 N -0.71 -7.58 4.52 -445.85 -2.02 -9.59 16 21 C 0.59 10.75 7.78 86.65 0.67 11.42 16 22 O -0.59 -16.22 16.65 -4.07 -0.07 -16.29 16 23 C -0.27 -4.05 6.31 -18.99 -0.12 -4.17 16 24 C -0.20 -2.94 11.01 23.65 0.26 -2.68 16 25 C -0.03 -0.24 12.03 66.89 0.80 0.56 16 26 O -0.18 -1.86 10.52 4.48 0.05 -1.81 16 27 C 0.04 0.36 11.61 67.39 0.78 1.14 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.08 0.72 7.75 -2.39 -0.02 0.70 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.41 6.95 8.47 -92.71 -0.79 6.16 16 38 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 39 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 40 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 41 H 0.41 1.69 7.57 -92.71 -0.70 0.99 16 42 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.24 0.23 8.06 -2.91 -0.02 0.21 16 44 H 0.25 -0.26 7.47 -2.91 -0.02 -0.28 16 Total: -1.00 -88.21 395.72 2.27 -85.94 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -0.46 Total: 12.78 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 6.23 Total: -6.52 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -4.30 Total: -84.22 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.07 Total: -43.84 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -88.21 2.27 -85.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756276525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.694 kcal (2) G-P(sol) polarization free energy of solvation -88.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds