Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46805 * 2 1 4 4 C 1.53004 * 109.47463 * 119.99611 * 2 1 3 5 5 C 1.52998 * 109.47475 * 185.00400 * 4 2 1 6 6 H 1.09000 * 109.46698 * 305.00438 * 5 4 2 7 7 C 1.52996 * 109.47309 * 185.00095 * 5 4 2 8 8 N 1.46505 * 109.47085 * 64.99994 * 5 4 2 9 9 C 1.34777 * 119.99724 * 205.00369 * 8 5 4 10 10 O 1.21613 * 120.00252 * 359.97438 * 9 8 5 11 11 C 1.47382 * 119.99755 * 179.72668 * 9 8 5 12 12 C 1.47012 * 127.19117 * 180.27474 * 11 9 8 13 13 C 1.34182 * 105.95391 * 179.97438 * 12 11 9 14 14 O 1.34217 * 109.12459 * 359.97438 * 13 12 11 15 15 C 1.33654 * 110.90776 * 359.76463 * 14 13 12 16 16 N 1.46495 * 109.47657 * 239.99940 * 2 1 3 17 17 C 1.34777 * 120.00230 * 84.99077 * 16 2 1 18 18 O 1.21282 * 119.99548 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00318 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.47244 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00074 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99908 * 359.97438 * 21 20 19 23 23 C 1.38792 * 119.99954 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00302 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47390 * 89.99315 * 25 23 21 27 27 H 1.48498 * 109.47220 * 210.00186 * 25 23 21 28 28 H 1.48512 * 109.46925 * 329.99707 * 25 23 21 29 29 H 1.08991 * 109.47415 * 60.00637 * 1 2 3 30 30 H 1.09005 * 109.46583 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47265 * 300.00036 * 1 2 3 32 32 H 1.08996 * 109.46923 * 64.99874 * 4 2 1 33 33 H 1.09001 * 109.46769 * 305.00609 * 4 2 1 34 34 H 1.09002 * 109.46807 * 299.99991 * 7 5 4 35 35 H 1.09003 * 109.47061 * 59.99966 * 7 5 4 36 36 H 1.08998 * 109.47099 * 179.97438 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99937 * 8 5 4 38 38 H 1.07999 * 127.02542 * 359.92534 * 12 11 9 39 39 H 1.08002 * 125.44078 * 180.02562 * 13 12 11 40 40 H 1.07999 * 125.80581 * 180.25076 * 15 14 13 41 41 H 0.97000 * 120.00046 * 265.00241 * 16 2 1 42 42 H 1.08992 * 109.47485 * 300.00682 * 19 17 16 43 43 H 1.09000 * 109.46713 * 60.00867 * 19 17 16 44 44 H 0.96997 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3138 6 1 3.9954 -0.9920 0.3869 7 6 4.0852 -1.4380 2.4926 8 7 3.9479 0.7896 1.4925 9 6 5.1611 1.2138 1.0867 10 8 5.9381 0.4321 0.5726 11 6 5.5442 2.6263 1.2610 12 6 6.8146 3.2568 0.8739 13 6 6.7080 4.5473 1.2256 14 8 5.5044 4.7533 1.7826 15 6 4.7914 3.6232 1.8092 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8588 1.1585 -2.4115 19 6 2.6501 -0.7285 -3.5874 20 16 2.7113 0.4346 -4.9729 21 6 3.3145 -0.6306 -6.2402 22 1 3.5241 -1.6670 -6.0201 23 6 3.5213 -0.1376 -7.5210 24 7 3.2664 1.1256 -7.7891 25 14 4.1615 -1.2667 -8.8644 26 1 3.0164 -1.9041 -9.5628 27 1 4.9573 -0.4764 -9.8377 28 1 5.0199 -2.3174 -8.2606 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7714 1.2057 33 1 1.6054 -0.2616 2.1370 34 1 3.6546 -1.0590 3.4194 35 1 3.8003 -2.4817 2.3596 36 1 5.1716 -1.3614 2.5382 37 1 3.3283 1.4131 1.9028 38 1 7.6611 2.7787 0.4034 39 1 7.4690 5.3003 1.0825 40 1 3.7906 3.5166 2.2008 41 1 2.2491 -1.6317 -1.1525 42 1 3.6493 -1.1202 -3.3978 43 1 1.9779 -1.5509 -3.8324 44 1 3.4106 1.4701 -8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756817229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -70.101565 kcal Electronic energy + Delta-G solvation = -27005.747097 eV Core-core repulsion = 23050.831688 eV Total energy + Delta-G solvation = -3954.915409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.71590 -40.02355 -39.13677 -36.88413 -34.67274 -33.16726 -32.39039 -31.86578 -31.05661 -29.62865 -28.50765 -27.06453 -25.44340 -24.25702 -22.03982 -21.67612 -21.10853 -20.51376 -20.08624 -18.65011 -17.79790 -16.69161 -16.37066 -16.33402 -16.23860 -15.85432 -15.12584 -14.83275 -14.76526 -14.73953 -14.29156 -13.97790 -13.70805 -13.57290 -13.15097 -13.08272 -12.92771 -12.73709 -12.61977 -12.52691 -12.36598 -12.27444 -11.92358 -11.54136 -11.15503 -11.03051 -10.98256 -10.94428 -10.72076 -10.10819 -9.98835 -9.77467 -9.33767 -9.29057 -9.03236 -9.00557 -8.86532 -8.19203 -6.45034 -6.17837 -3.87701 1.15447 1.91817 2.69480 2.93941 3.08540 3.15451 3.25276 3.28302 3.30783 3.35789 3.76158 4.24349 4.26625 4.37387 4.47638 4.56499 4.82155 4.86173 5.09646 5.15513 5.17367 5.22241 5.25976 5.30036 5.35353 5.44956 5.48190 5.49554 5.60075 5.66859 5.70150 5.83189 5.94275 5.94954 6.01000 6.09640 6.17080 6.20402 6.29399 6.70480 6.73007 7.31460 7.63552 7.75027 8.11528 8.39270 8.66912 9.27606 10.89671 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.003016 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.061861 B = 9281.579374 C =10745.037570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.141 3.859 6 H 0.095 0.905 7 C -0.163 4.163 8 N -0.722 5.722 9 C 0.589 3.411 10 O -0.529 6.529 11 C -0.232 4.232 12 C -0.163 4.163 13 C -0.041 4.041 14 O -0.175 6.175 15 C 0.019 3.981 16 N -0.733 5.733 17 C 0.535 3.465 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.160 0.840 39 H 0.209 0.791 40 H 0.209 0.791 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -0.185 26.235 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.037 3.963 6 H 0.113 0.887 7 C -0.221 4.221 8 N -0.374 5.374 9 C 0.377 3.623 10 O -0.406 6.406 11 C -0.236 4.236 12 C -0.183 4.183 13 C -0.106 4.106 14 O -0.070 6.070 15 C -0.051 4.051 16 N -0.388 5.388 17 C 0.321 3.679 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.178 0.822 39 H 0.226 0.774 40 H 0.225 0.775 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.312 1.631 25.733 25.786 hybrid contribution 0.590 -2.426 -0.728 2.600 sum 0.278 -0.795 25.005 25.019 Atomic orbital electron populations 1.22192 0.95319 1.02099 1.02631 1.20870 0.93854 0.97766 0.83820 0.89465 1.22253 0.94326 1.02572 0.98240 1.21000 0.94265 0.80942 1.00106 0.88738 1.22184 1.02213 0.99893 0.97832 1.45853 1.16614 1.11289 1.63648 1.17251 0.81515 0.86093 0.77435 1.90808 1.51062 1.55842 1.42865 1.21544 0.97318 0.94727 1.10051 1.22817 0.98220 0.93437 1.03783 1.23963 0.86831 0.98186 1.01659 1.83785 1.25152 1.34960 1.63056 1.24379 0.97209 0.82919 1.00641 1.46069 1.69416 1.13803 1.09510 1.20270 0.76629 0.87202 0.83774 1.90684 1.48362 1.15712 1.84439 1.23534 1.03661 1.04824 0.98460 1.85353 1.86232 1.13028 0.98715 1.22875 1.50892 0.98146 0.96366 0.90963 1.24979 0.95110 0.95515 0.97938 1.70019 1.45724 1.13198 1.21435 0.86178 0.78832 0.80002 0.80558 1.20293 1.20752 1.19670 0.91589 0.92517 0.92024 0.89518 0.89851 0.92493 0.91479 0.91932 0.77079 0.82231 0.77405 0.77453 0.76979 0.89280 0.89327 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.25 16 2 C 0.14 1.49 2.52 -67.93 -0.17 1.32 16 3 H 0.09 1.10 7.06 -51.93 -0.37 0.73 16 4 C -0.14 -0.92 4.29 -26.73 -0.11 -1.03 16 5 C 0.14 1.27 2.52 -67.93 -0.17 1.10 16 6 H 0.09 1.14 7.05 -51.93 -0.37 0.77 16 7 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 8 N -0.72 -6.89 4.44 -54.89 -0.24 -7.13 16 9 C 0.59 7.91 7.78 -12.54 -0.10 7.81 16 10 O -0.53 -9.31 16.65 5.27 0.09 -9.22 16 11 C -0.23 -2.75 6.31 -103.28 -0.65 -3.40 16 12 C -0.16 -1.87 11.01 -37.46 -0.41 -2.28 16 13 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 14 O -0.17 -1.66 10.52 7.64 0.08 -1.58 16 15 C 0.02 0.17 11.61 30.08 0.35 0.52 16 16 N -0.73 -9.61 4.45 -53.81 -0.24 -9.85 16 17 C 0.54 10.13 7.81 -10.99 -0.09 10.04 16 18 O -0.52 -11.77 15.52 5.56 0.09 -11.68 16 19 C -0.15 -3.23 6.16 36.00 0.22 -3.01 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.63 9.50 30.94 0.29 -15.33 16 22 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 23 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 24 N -0.87 -26.66 13.22 55.49 0.73 -25.93 16 25 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.54 7.57 -40.82 -0.31 2.23 16 38 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.21 0.90 7.47 -52.49 -0.39 0.51 16 41 H 0.40 4.16 8.60 -40.82 -0.35 3.81 16 42 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -39.65 393.66 -7.08 -46.73 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.40 Total: 4.14 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.12 Total: -4.39 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.25 Total: -42.91 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.25 Total: -22.48 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.65 -7.08 -46.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756817229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.373 kcal (2) G-P(sol) polarization free energy of solvation -39.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds