Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46805 * 2 1 4 4 C 1.53004 * 109.47463 * 119.99611 * 2 1 3 5 5 C 1.52998 * 109.47475 * 185.00400 * 4 2 1 6 6 H 1.09000 * 109.46698 * 305.00438 * 5 4 2 7 7 C 1.52996 * 109.47309 * 185.00095 * 5 4 2 8 8 N 1.46505 * 109.47085 * 64.99994 * 5 4 2 9 9 C 1.34777 * 119.99724 * 205.00369 * 8 5 4 10 10 O 1.21613 * 120.00252 * 359.97438 * 9 8 5 11 11 C 1.47382 * 119.99755 * 179.72668 * 9 8 5 12 12 C 1.47012 * 127.19117 * 180.27474 * 11 9 8 13 13 C 1.34182 * 105.95391 * 179.97438 * 12 11 9 14 14 O 1.34217 * 109.12459 * 359.97438 * 13 12 11 15 15 C 1.33654 * 110.90776 * 359.76463 * 14 13 12 16 16 N 1.46495 * 109.47657 * 239.99940 * 2 1 3 17 17 C 1.34777 * 120.00230 * 84.99077 * 16 2 1 18 18 O 1.21282 * 119.99548 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00318 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.47244 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00074 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99908 * 359.97438 * 21 20 19 23 23 C 1.38792 * 119.99954 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00302 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47390 * 89.99315 * 25 23 21 27 27 H 1.48498 * 109.47220 * 210.00186 * 25 23 21 28 28 H 1.48512 * 109.46925 * 329.99707 * 25 23 21 29 29 H 1.08991 * 109.47415 * 60.00637 * 1 2 3 30 30 H 1.09005 * 109.46583 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47265 * 300.00036 * 1 2 3 32 32 H 1.08996 * 109.46923 * 64.99874 * 4 2 1 33 33 H 1.09001 * 109.46769 * 305.00609 * 4 2 1 34 34 H 1.09002 * 109.46807 * 299.99991 * 7 5 4 35 35 H 1.09003 * 109.47061 * 59.99966 * 7 5 4 36 36 H 1.08998 * 109.47099 * 179.97438 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99937 * 8 5 4 38 38 H 1.07999 * 127.02542 * 359.92534 * 12 11 9 39 39 H 1.08002 * 125.44078 * 180.02562 * 13 12 11 40 40 H 1.07999 * 125.80581 * 180.25076 * 15 14 13 41 41 H 0.97000 * 120.00046 * 265.00241 * 16 2 1 42 42 H 1.08992 * 109.47485 * 300.00682 * 19 17 16 43 43 H 1.09000 * 109.46713 * 60.00867 * 19 17 16 44 44 H 0.96997 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3138 6 1 3.9954 -0.9920 0.3869 7 6 4.0852 -1.4380 2.4926 8 7 3.9479 0.7896 1.4925 9 6 5.1611 1.2138 1.0867 10 8 5.9381 0.4321 0.5726 11 6 5.5442 2.6263 1.2610 12 6 6.8146 3.2568 0.8739 13 6 6.7080 4.5473 1.2256 14 8 5.5044 4.7533 1.7826 15 6 4.7914 3.6232 1.8092 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8588 1.1585 -2.4115 19 6 2.6501 -0.7285 -3.5874 20 16 2.7113 0.4346 -4.9729 21 6 3.3145 -0.6306 -6.2402 22 1 3.5241 -1.6670 -6.0201 23 6 3.5213 -0.1376 -7.5210 24 7 3.2664 1.1256 -7.7891 25 14 4.1615 -1.2667 -8.8644 26 1 3.0164 -1.9041 -9.5628 27 1 4.9573 -0.4764 -9.8377 28 1 5.0199 -2.3174 -8.2606 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7714 1.2057 33 1 1.6054 -0.2616 2.1370 34 1 3.6546 -1.0590 3.4194 35 1 3.8003 -2.4817 2.3596 36 1 5.1716 -1.3614 2.5382 37 1 3.3283 1.4131 1.9028 38 1 7.6611 2.7787 0.4034 39 1 7.4690 5.3003 1.0825 40 1 3.7906 3.5166 2.2008 41 1 2.2491 -1.6317 -1.1525 42 1 3.6493 -1.1202 -3.3978 43 1 1.9779 -1.5509 -3.8324 44 1 3.4106 1.4701 -8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756817229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -100.289393 kcal Electronic energy + Delta-G solvation = -27007.056140 eV Core-core repulsion = 23050.831688 eV Total energy + Delta-G solvation = -3956.224451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.47766 -41.07543 -40.39544 -37.93331 -35.75667 -34.61170 -34.02436 -32.95836 -32.00536 -30.39769 -29.97135 -27.74222 -27.67545 -25.10244 -22.99573 -22.46702 -22.00330 -21.54729 -21.13189 -19.87904 -19.38203 -17.94436 -17.49385 -17.31008 -17.12433 -16.90651 -16.82128 -16.37235 -15.92395 -15.90062 -15.60061 -15.10767 -14.78490 -14.60436 -14.52489 -14.38867 -13.88583 -13.72647 -13.63751 -13.42710 -13.22342 -13.19420 -13.05247 -12.93702 -12.90290 -12.62478 -12.41431 -11.93896 -11.75306 -11.70606 -11.16475 -11.15917 -10.90346 -10.87109 -10.31703 -10.15793 -10.07079 -9.74186 -8.69005 -8.37105 -6.15290 0.36108 1.10680 1.25060 1.40243 1.44642 1.56010 1.63320 1.99313 2.17927 2.24725 2.33771 2.34557 2.96815 3.30107 3.54397 3.65174 3.75488 3.84265 4.00924 4.12928 4.16156 4.25216 4.38732 4.46011 4.46953 4.52591 4.54278 4.71985 4.74499 4.78571 4.85906 4.93892 5.00119 5.12279 5.17156 5.28613 5.31243 5.37818 5.38719 5.47887 5.62744 5.96765 6.17114 6.51361 6.52923 7.03923 7.21415 7.27462 8.72351 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.003016 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.061861 B = 9281.579374 C =10745.037570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.066 0.934 4 C -0.118 4.118 5 C 0.136 3.864 6 H 0.059 0.941 7 C -0.155 4.155 8 N -0.705 5.705 9 C 0.582 3.418 10 O -0.588 6.588 11 C -0.275 4.275 12 C -0.206 4.206 13 C -0.023 4.023 14 O -0.176 6.176 15 C 0.045 3.955 16 N -0.709 5.709 17 C 0.535 3.465 18 O -0.563 6.563 19 C -0.133 4.133 20 S -0.148 6.148 21 C -0.550 4.550 22 H 0.080 0.920 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.265 1.265 27 H -0.276 1.276 28 H -0.261 1.261 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.413 0.587 38 H 0.146 0.854 39 H 0.246 0.754 40 H 0.253 0.747 41 H 0.412 0.588 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 -1.500 28.534 28.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.084 0.916 4 C -0.156 4.156 5 C 0.032 3.968 6 H 0.077 0.923 7 C -0.213 4.213 8 N -0.358 5.358 9 C 0.371 3.629 10 O -0.469 6.469 11 C -0.279 4.279 12 C -0.226 4.226 13 C -0.089 4.089 14 O -0.071 6.071 15 C -0.026 4.026 16 N -0.363 5.363 17 C 0.320 3.680 18 O -0.441 6.441 19 C -0.284 4.284 20 S 0.079 5.921 21 C -0.697 4.697 22 H 0.098 0.902 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.185 1.185 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.250 0.750 38 H 0.164 0.836 39 H 0.262 0.738 40 H 0.269 0.731 41 H 0.249 0.751 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.733 0.288 28.108 28.163 hybrid contribution 0.980 -2.006 -1.297 2.582 sum -0.753 -1.718 26.811 26.877 Atomic orbital electron populations 1.22139 0.94103 1.03095 1.02270 1.21154 0.94715 0.97044 0.83877 0.91626 1.22228 0.92037 1.04052 0.97304 1.21101 0.95871 0.80562 0.99315 0.92282 1.22109 1.00294 1.00824 0.98071 1.45772 1.15574 1.12105 1.62312 1.17616 0.82047 0.86458 0.76819 1.90762 1.52966 1.57342 1.45848 1.21670 0.98581 0.94890 1.12803 1.22978 0.98618 0.95042 1.05978 1.24553 0.86969 0.97836 0.99512 1.83828 1.25324 1.35105 1.62799 1.25110 0.97932 0.81520 0.97991 1.45897 1.67391 1.14417 1.08589 1.19936 0.76677 0.86618 0.84735 1.90666 1.50757 1.17480 1.85211 1.23391 1.04889 1.03413 0.96695 1.85480 1.86599 1.17405 1.02605 1.23205 1.51192 0.98389 0.96947 0.90205 1.26126 0.94966 0.97241 1.00685 1.70179 1.46812 1.15436 1.22276 0.84956 0.78510 0.77726 0.76801 1.18957 1.20103 1.18464 0.95458 0.90799 0.88908 0.86903 0.86045 0.90115 0.89712 0.94958 0.75027 0.83575 0.73839 0.73107 0.75135 0.88510 0.87225 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.48 71.98 0.68 -1.96 16 2 C 0.14 2.54 2.52 44.99 0.11 2.66 16 3 H 0.07 1.57 7.06 -2.38 -0.02 1.55 16 4 C -0.12 -1.12 4.29 30.59 0.13 -0.99 16 5 C 0.14 2.22 2.52 44.99 0.11 2.33 16 6 H 0.06 1.42 7.05 -2.39 -0.02 1.41 16 7 C -0.15 -2.04 9.48 71.98 0.68 -1.36 16 8 N -0.71 -12.78 4.44 -445.84 -1.98 -14.76 16 9 C 0.58 16.29 7.78 86.65 0.67 16.96 16 10 O -0.59 -22.37 16.65 -4.07 -0.07 -22.43 16 11 C -0.27 -6.70 6.31 -18.99 -0.12 -6.82 16 12 C -0.21 -5.04 11.01 23.65 0.26 -4.78 16 13 C -0.02 -0.40 12.03 66.89 0.80 0.40 16 14 O -0.18 -3.04 10.52 4.43 0.05 -3.00 16 15 C 0.04 0.71 11.61 67.40 0.78 1.50 16 16 N -0.71 -17.78 4.45 -442.54 -1.97 -19.75 16 17 C 0.53 20.54 7.81 87.66 0.68 21.22 16 18 O -0.56 -26.53 15.52 -3.03 -0.05 -26.58 16 19 C -0.13 -5.65 6.16 71.24 0.44 -5.21 16 20 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 21 C -0.55 -32.74 9.50 67.95 0.65 -32.09 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 23 C 0.01 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -57.37 13.22 21.65 0.29 -57.08 16 25 Si 1.00 45.02 29.55 68.60 2.03 47.05 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 29 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.41 4.26 7.57 -92.71 -0.70 3.55 16 38 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.25 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.25 1.30 7.47 -2.91 -0.02 1.28 16 41 H 0.41 7.82 8.60 -92.71 -0.80 7.03 16 42 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 44 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -94.75 393.66 3.03 -91.72 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.47 Total: 21.40 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 6.36 Total: -6.81 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -3.66 Total: -91.59 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.07 Total: -52.01 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -94.75 3.03 -91.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756817229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.570 kcal (2) G-P(sol) polarization free energy of solvation -94.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds