Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47136 * 73.81278 * 3 2 1 5 5 C 1.42906 * 114.00144 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47310 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47072 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00144 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99965 * 180.02562 * 7 6 5 10 10 C 1.47072 * 136.05481 * 4.93227 * 9 7 6 11 11 C 1.53613 * 88.00182 * 152.96973 * 10 9 7 12 12 C 1.47067 * 136.05852 * 184.98635 * 9 7 6 13 13 H 1.08998 * 113.46957 * 92.24558 * 12 9 7 14 14 C 1.52999 * 113.46497 * 321.86145 * 12 9 7 15 15 N 1.46499 * 109.46881 * 175.89969 * 14 12 9 16 16 C 1.34779 * 120.00158 * 174.86934 * 15 14 12 17 17 O 1.21281 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00340 * 180.02562 * 16 15 14 19 19 S 1.80994 * 109.47096 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00157 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99601 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00063 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00301 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47373 * 60.00333 * 24 22 20 26 26 H 1.48506 * 109.47004 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47400 * 300.00012 * 24 22 20 28 28 H 4.38446 * 5.44408 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47295 * 313.81062 * 3 2 1 30 30 H 1.09003 * 109.47266 * 193.80699 * 3 2 1 31 31 H 1.08995 * 109.46996 * 60.00035 * 5 4 3 32 32 H 1.08998 * 109.46898 * 299.99748 * 5 4 3 33 33 H 1.09000 * 109.46796 * 59.99382 * 6 5 4 34 34 H 1.09007 * 109.46740 * 299.99855 * 6 5 4 35 35 H 1.09003 * 113.46337 * 267.69429 * 10 9 7 36 36 H 1.08992 * 113.46774 * 38.13521 * 10 9 7 37 37 H 1.09010 * 114.20170 * 272.44770 * 11 10 9 38 38 H 1.08997 * 114.24291 * 139.59401 * 11 10 9 39 39 H 1.08996 * 109.47099 * 55.90234 * 14 12 9 40 40 H 1.09000 * 109.47390 * 295.89352 * 14 12 9 41 41 H 0.97001 * 120.00277 * 355.14139 * 15 14 12 42 42 H 1.09000 * 109.46408 * 299.99954 * 18 16 15 43 43 H 1.09000 * 109.47173 * 59.99650 * 18 16 15 44 44 H 0.97004 * 120.00093 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3747 -1.2939 5 6 4.5471 -0.4061 -1.4021 6 6 4.9418 -0.8174 -2.8220 7 6 6.4441 -0.8511 -2.9359 8 8 7.1314 -0.5730 -1.9761 9 7 7.0239 -1.1892 -4.1046 10 6 6.5615 -1.4915 -5.4676 11 6 7.9266 -1.0083 -5.9802 12 6 8.3972 -1.4190 -4.5780 13 1 8.7100 -2.4612 -4.5132 14 6 9.4197 -0.4558 -3.9720 15 7 10.7640 -0.8226 -4.4244 16 6 11.8188 -0.0491 -4.0996 17 8 11.6551 0.9510 -3.4333 18 6 13.2016 -0.4261 -4.5655 19 16 14.3934 0.8000 -3.9720 20 6 15.8797 0.1309 -4.6411 21 1 15.8489 -0.7800 -5.2205 22 6 17.0899 0.7749 -4.4243 23 7 17.1274 1.8853 -3.7185 24 14 18.6658 0.0650 -5.1331 25 1 18.5561 -0.0041 -6.6124 26 1 19.8112 0.9339 -4.7613 27 1 18.8829 -1.2993 -4.5886 28 1 -1.0499 -0.0002 0.0000 29 1 3.0097 -0.7106 0.7416 30 1 3.0089 0.9988 0.2453 31 1 4.9498 -1.1261 -0.6897 32 1 4.9498 0.5834 -1.1857 33 1 4.5390 -0.0971 -3.5340 34 1 4.5391 -1.8068 -3.0388 35 1 6.3851 -2.5532 -5.6406 36 1 5.7293 -0.8670 -5.7922 37 1 7.9778 0.0635 -6.1727 38 1 8.3418 -1.6133 -6.7861 39 1 9.3738 -0.5141 -2.8846 40 1 9.1941 0.5617 -4.2912 41 1 10.8944 -1.6201 -4.9610 42 1 13.4631 -1.4076 -4.1700 43 1 13.2224 -0.4560 -5.6549 44 1 17.9733 2.3352 -3.5668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759815768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -22.205116 kcal Electronic energy + Delta-G solvation = -25259.212295 eV Core-core repulsion = 21306.373832 eV Total energy + Delta-G solvation = -3952.838463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02404 -39.15370 -38.72707 -37.98539 -34.44573 -33.92278 -32.41503 -32.18499 -30.31363 -29.80591 -27.74199 -27.33928 -25.46585 -24.30225 -23.38577 -21.98648 -20.50715 -19.30164 -18.80104 -17.97274 -17.70203 -16.98850 -16.68662 -16.51718 -16.28371 -15.79763 -15.36690 -15.27388 -15.13525 -14.79321 -14.73133 -13.93486 -13.86674 -13.68805 -13.31075 -13.18348 -13.04648 -12.85690 -12.53681 -12.36538 -12.17070 -11.98462 -11.90800 -11.71054 -11.04318 -11.02984 -11.01801 -11.01159 -10.92072 -10.75206 -10.13410 -10.03663 -9.81224 -9.39595 -9.16242 -9.04944 -8.85449 -8.21692 -6.48255 -6.19846 -3.90565 1.90905 2.23459 2.32191 2.33495 3.08546 3.13125 3.24411 3.28710 3.32108 3.39133 3.77257 3.83192 3.97942 4.17763 4.21924 4.41274 4.50255 4.58269 4.62044 4.72015 4.77794 4.87739 4.91336 4.93354 4.99759 5.15111 5.19259 5.28376 5.31943 5.33626 5.36508 5.44103 5.57002 5.66780 5.77194 5.91368 6.03791 6.14770 6.58749 6.60034 7.08813 7.28736 7.60450 7.69760 7.76017 8.36371 8.63996 9.25109 10.87525 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.001547 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.202964 B =18090.291923 C =18973.909481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.076 3.924 6 C -0.131 4.131 7 C 0.545 3.455 8 O -0.528 6.528 9 N -0.643 5.643 10 C 0.099 3.901 11 C -0.151 4.151 12 C 0.124 3.876 13 H 0.101 0.899 14 C 0.116 3.884 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.290 -10.070 -2.627 32.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.171 4.171 7 C 0.335 3.665 8 O -0.403 6.403 9 N -0.380 5.380 10 C -0.023 4.023 11 C -0.189 4.189 12 C 0.020 3.980 13 H 0.118 0.882 14 C -0.009 4.009 15 N -0.392 5.392 16 C 0.318 3.682 17 O -0.388 6.388 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -31.316 -8.060 -0.815 32.346 hybrid contribution 1.137 -2.064 -1.310 2.696 sum -30.179 -10.123 -2.125 31.903 Atomic orbital electron populations 1.24994 0.95911 1.00595 0.97721 1.22557 0.93896 1.00774 1.02086 1.19066 0.84619 1.00671 0.85832 1.87846 1.21610 1.90285 1.30965 1.22178 0.79861 1.01977 0.96029 1.21375 0.91896 1.05132 0.98685 1.19976 0.89730 0.76360 0.80450 1.90791 1.65183 1.48124 1.36241 1.49658 1.09464 1.69336 1.09581 1.23035 0.98523 1.01349 0.79437 1.23614 0.95628 1.03493 0.96165 1.22899 0.83584 0.99809 0.91661 0.88179 1.21437 0.80755 0.97909 1.00761 1.45846 1.06496 1.29505 1.57386 1.20307 0.85711 0.82870 0.79351 1.90721 1.85343 1.25550 1.37158 1.23523 0.95745 1.06519 1.04505 1.85440 0.97534 1.30243 1.70102 1.22830 0.93023 1.13365 1.39279 0.90975 1.24983 0.98814 0.94743 0.94974 1.70008 1.26983 1.16370 1.36915 0.86230 0.81078 0.78898 0.79320 1.19943 1.20813 1.19951 0.76112 0.90512 0.90440 0.91839 0.91694 0.87958 0.87992 0.89324 0.89885 0.88102 0.88604 0.90120 0.90925 0.76944 0.89203 0.89174 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 19.25 29.55 0.57 -0.61 16 2 C -0.19 -1.60 13.73 -37.12 -0.51 -2.11 16 3 C 0.17 1.27 6.41 34.37 0.22 1.49 16 4 O -0.39 -3.44 10.30 -35.23 -0.36 -3.81 16 5 C 0.08 0.63 5.23 37.16 0.19 0.82 16 6 C -0.13 -0.94 5.90 -27.88 -0.16 -1.10 16 7 C 0.55 5.59 8.00 -10.99 -0.09 5.51 16 8 O -0.53 -7.72 15.36 5.56 0.09 -7.64 16 9 N -0.64 -5.30 3.57 -177.22 -0.63 -5.94 16 10 C 0.10 0.42 8.42 -8.43 -0.07 0.35 16 11 C -0.15 -0.78 8.02 -26.16 -0.21 -0.99 16 12 C 0.12 1.01 4.08 -72.38 -0.30 0.71 16 13 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 14 C 0.12 1.49 5.39 -4.04 -0.02 1.47 16 15 N -0.74 -9.83 5.55 -60.30 -0.33 -10.17 16 16 C 0.53 10.15 7.85 -10.98 -0.09 10.06 16 17 O -0.51 -12.23 15.86 5.56 0.09 -12.14 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 H 0.22 0.64 7.80 -54.09 -0.42 0.22 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.63 7.95 -51.92 -0.41 0.21 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 40 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 41 H 0.40 3.80 8.48 -40.82 -0.35 3.45 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -39.37 401.65 -8.22 -47.58 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.57 Total: -0.60 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.04 Total: -0.28 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.23 Total: -41.71 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.19 Total: -23.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.37 -8.22 -47.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759815768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.378 kcal (2) G-P(sol) polarization free energy of solvation -39.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds